Methods and compositions for transducing lymphocytes and regulated expansion thereof
The present disclosure provides methods for genetically modifying lymphocytes and methods for performing adoptive cellular therapy that include transducing T cells and/or NK cells without prior ex vivo stimulation. The methods typically include engineered signaling polypeptides that can include a lymphoproliferative element, and/or a chimeric antigen receptor (CAR), for example a microenvironment restricted CAR. Additional elements of such engineered signaling polypeptides are provided herein, as well as vectors, such as retroviral vectors, packaging cell lines and methods of making the same. Furthermore, recombinant retroviruses and methods of making the same are provided. Numerous controls are provided, including riboswitches that are controlled, for example in vivo, by nucleoside analogues.
1. An isolated polynucleotide, comprising:
a) an aptamer RNA comprising an aptamer domain capable of binding acyclovir;
b) a reverse complement of the aptamer RNA;
c) a coding DNA encoding the aptamer RNA; or
d) a reverse complement DNA encoding the reverse complement of the aptamer RNA,
wherein the aptamer domain comprises from 5′ to 3′, ACUUAU followed by an RNA version of the nucleotide sequence of any one of SEQ ID NOs: 108-221 followed by AUAAGU.
2. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the aptamer RNA or the coding DNA and further comprises a target polynucleotide encoding at least one of a target polypeptide, an miRNA, or an shRNA, or
wherein the isolated polynucleotide comprises the reverse complement of the aptamer RNA or the reverse complement DNA and further comprises the reverse complement of the target polynucleotide.
3. The isolated polynucleotide of claim 2 , wherein the isolated polynucleotide is within a T cell or a packaging cell.
4. The isolated polynucleotide of claim 2 , wherein the isolated polynucleotide is DNA, and wherein the DNA is within the genome of a T cell or a packaging cell.
5. The isolated polynucleotide of claim 2 , wherein the isolated polynucleotide further comprises a promoter operably linked to the target polynucleotide, or the reverse complement of the promoter operably linked to the reverse complement of the target polynucleotide.
6. The isolated polynucleotide of claim 5 , wherein the target polynucleotide encodes the target polypeptide, and wherein the target polypeptide is a chimeric antigen receptor.
7. The isolated polynucleotide of claim 5 , wherein the target polynucleotide encodes the target polypeptide, and wherein the target polypeptide is a lymphoproliferative element.
8. The isolated polynucleotide of claim 2 , wherein the isolated polynucleotide further comprises a function switching domain.
9. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the aptamer RNA.
10. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the reverse complement of the aptamer RNA.
11. The isolated polynucleotide of claim 10 , wherein the isolated polynucleotide further comprises a reverse complement of a target polynucleotide encoding at least one of a target polypeptide, an miRNA, or an shRNA.
12. The isolated polynucleotide of claim 11 , wherein the isolated polynucleotide is within a solution comprising a buffer.
13. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the coding DNA.
14. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the reverse complement DNA.
15. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide is a vector.
16. The isolated polynucleotide of claim 15 , wherein the isolated polynucleotide is RNA, and wherein the vector is a retroviral vector.
17. The isolated polynucleotide of claim 16 , wherein the vector is a lentiviral vector.
18. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of any one of the nucleotide sequences of SEQ ID NOs:108-146.
19. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of any one of the nucleotide sequences of SEQ ID NOs:147-163.
20. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of any one of the nucleotide sequences of SEQ ID NOs:164-182.
21. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of any one of the nucleotide sequences of SEQ ID NOs:183-197.
22. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of any one of the nucleotide sequences of SEQ ID NOs:198-219.
23. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of the nucleotide sequence of SEQ ID NO:220.
24. The isolated polynucleotide of claim 1 , wherein the isolated polynucleotide comprises the RNA version of the nucleotide sequence of SEQ ID NO:221.