IP Library Granted Patent US 10,329,591
Granted Patent B2
US 10,329,591 · App. 15/507,435 · Granted Jun 25, 2019

Method and microorganism for methionine production by fermentation with improved methionine efflux

Inventors: Rainer Figge (Le Crest, FR); Laurence Dumon-Seignovert (Pont du Chateau, FR); Perrine Vasseur (Martres sur Morges, FR); Wanda Dischert (Vic-le-Comte, FR)
Assignee: Evonik Degussa GmbH
C12P13/12C07K14/245
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Quick Facts
Patent No.
US 10,329,591
App. No.
15/507,435
Granted
Jun 25, 2019
Kind
B2
Abstract

The present invention is related to a recombinant microorganism optimized for the fermentative production of methionine and/or its derivatives, wherein in said recombinant strain, the methionine efflux is enhanced by overexpressing the homologous logous genes of ygaZ and ygaH genes from Escherichia coli . It is also related to a method for optimizing the fermentative production of methionine or its derivatives comprising the steps of: a. culturing a recombinant microorganism wherein in said microorganism, the methionine efflux is enhanced by overexpressing the ygaZH homologous genes of ygaZ and ygaH genes from Escherichia coli , in an appropriate culture medium comprising a fermentable source of carbon and a source of sulphur, and b. recovering methionine and/or its derivatives from the culture medium.

Claims (29)

1. A recombinant Escherichia coli ( E. coli ) strain for the fermentative production of methionine, wherein in said recombinant strain:

the expression of ygaZH homologous genes of ygaZ and ygaH genes from E. coli is increased compared to a non-modified E. coli strain with the proviso that it is neither combined with overexpression of genes metH, and optionally of fldA and fpr from E. coli nor with attenuation of expression of at least one gene selected from the group consisting of metN, metI and metQ genes, and

said ygaZH homologous genes are selected from the group consisting of genes encoding the pair of YgaZH homologue defined respectively by: SEQ ID NO: 3 and SEQ ID NO: 4 from Citrobacter koseri , SEQ ID NO: 9 and SEQ ID NO: 10 from Enterobacter sp. (R4-368), SEQ ID NO: 17 and SEQ ID NO: 18 from Citrobacter youngae, SEQ ID NO: 19 and SEQ ID NO: 20 from Citrobacter freundii,

and wherein the increased expression is achieved by:

i) increasing the number of copies of the genes in the microorganism,

ii) using a promoter leading to a high level of expression of the genes, and/or

iii) attenuating the activity or the expression of a transcription repressor.

2. The recombinant microorganism of claim 1 , wherein the ygaZH homologous genes are expressed under control of an inducible promoter.

3. The recombinant microorganism of claim 1 , wherein the expression of at least one of the following genes is also increased: ptsG, pyc, pntAB, cysP, cysU, cysW, cysA, cysM, cyst, cysI, cysH, gcvT, gcvH, gcvP, lpd, serA, serB, serC, cysE, metF, metA, metA* allele encoding for an enzyme with reduced feed-back sensitivity to S-adenosylmethionine and/or methionine, thrA, or a thrA* allele encoding for an enzyme with reduced feed-back inhibition to threonine.

4. The recombinant microorganism of claim 3 , wherein at least one of said genes is under the control of an inducible promoter.

5. The recombinant microorganism of claim 1 , wherein the expression of at least one of the following genes is also attenuated: metJ, pykA, pykF, purU, ybdL, yncA, metE, dgsA or udhA.

6. The recombinant microorganism of claim 1 , wherein:

a. the ygaZ and ygaH homologous genes are overexpressed,

b. the expression of the genes metA*, cysPUWAM, cysJIH, gcvTHP, metF, serA, serB, serC, cysE, thrA*, ptsG and pyc are enhanced; and

c. the expression of the genes metJ, pykA, pykF, purU, dgsA, metE and yncA are attenuated.

7. A method for the fermentative production of methionine comprising:

a. culturing a recombinant Escherichia coli ( E. coli ) strain, wherein in said microorganism, the ygaZH homologous genes of ygaZ and ygaH genes from E. coli are overexpressed; with the provisio that this overexpression is neither combined with overexpression of metH, and optionally of fldA and fpr from E. coli or their homologous genes from C. glutamicum nor with attenuation of expression of at least one gene selected from the group consisting of metN, metI and metQ, said ygaZH homologous genes are selected from the group of genes encoding the pair of YgaZH homologue defined respectively by: SEQ ID NO: 3 and SEQ ID NO: 4 from Citrobacter koseri , SEQ ID NO: 9 and SEQ ID NO: 10 from Enterobacter sp. (R4-368), SEQ ID NO: 17 and SEQ ID NO: 18 from Citrobacter youngae, SEQ ID NO: 19 and SEQ ID NO: 20 from Citrobacter freundii in an appropriate culture medium comprising a fermentable source of carbon and a source of sulphur, and

b. recovering methionine from the culture medium,

wherein the overexpression is achieved by:

i) increasing the number of copies of the genes in the microorganism,

ii) using a promoter leading to a high level of expression of the genes, and/or

iii) attenuating the activity or the expression of a transcription repressor.

8. The method of claim 7 , wherein growth of the recombinant microorganism is subjected to limitation or deficiency for one or several inorganic substrate(s) in the culture medium.

9. The method of claim 7 , wherein recovering methionine comprises concentration of methionine in the fermentation broth.

10. A genetically modified Escherichia coli ( E. coli ) strain for the fermentative production of methionine, wherein in said genetically modified strain, ygaZH homologous genes of ygaZ and ygaH genes from E. coli are overexpressed said ygaZH homologous genes are selected from the group consisting of genes encoding the pair of YgaZH homologue defined respectively by: SEQ ID NO: 3 and SEQ ID NO: 4 from Citrobacter koseri , SEQ ID NO: 9 and SEQ ID NO: 10 from Enterobacter sp. (R4-368), SEQ ID NO: 17 and SEQ ID NO: 18 from Citrobacter youngae, SEQ ID NO: 19 and SEQ ID NO: 20 from Citrobacter freundii.

11. A method for the fermentative production of methionine comprising:

a. culturing a genetically modified Escherichia coli ( E. coli ) strain wherein in said microorganism, the ygaZH homologous genes of ygaZ and ygaH genes from E. coli are overexpressed in an appropriate culture medium comprising a fermentable source of carbon and a source of sulphur, said ygaZH homologous genes are selected from the group consisting of genes encoding the pair of YgaZH homologue defined respectively by: SEQ ID NO: 3 and SEQ ID NO: 4 from Citrobacter koseri , SEQ ID NO: 9 and SEQ ID NO: 10 from Enterobacter sp. (R4-368), SEQ ID NO: 17 and SEQ ID NO: 18 from Citrobacter youngae, SEQ ID NO: 19 and SEQ ID NO: 20 from Citrobacter freundii , and

b. recovering methionine from the culture medium.

12. The method of claim 7 , wherein growth of the recombinant microorganism is subjected to limitation or deficiency for phosphate and/or potassium in the culture medium.

Assignments (3)
CHANGE OF NAME Recorded Nov 18, 2019
From: EVONIK DEGUSSA GMBH
To: EVONIK OPERATIONS GMBH
Reel/Frame 051045/0872 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 12, 2017
From: METABOLIC EXPLORER
To: EVONIK DEGUSSA GMBH
Reel/Frame 042986/0719 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 6, 2017
From: FIGGE, RAINER; DUMON-SEIGNOVERT, LAURENCE; VASSEUR, PERRINE; DISCHERT, WANDA
To: METABOLIC EXPLORER
Reel/Frame 041889/0263 →
Priority Claims (1)
EP 14306346 · Sep 1, 2014 · regional
Continuity (1)
Related Publication 20170240938A1 · Aug 24, 2017