Methods of detecting
The present invention relates to the identification of microorganisms from an environmental sample, and in particular to the rapid identification of Listeria spp. The methods and kits described herein provide a method of detecting Listeria spp. without the need for an enrichment step.
1. A method for detecting Listeria spp. in an environmental sample, the method comprising the steps of:
collecting an environmental sample with a collection device;
expressing the collection device in a lysis reagent solution comprised of sodium sulfate, magnesium sulfate, poly(ethylene oxide)octylphenyl ether, potassium phosphate, lysozyme, and proteinase K; and
performing a pathogen diagnostic assay that targets bacterial RNA sequences for amplification and detection of Listeria RNA in the sample.
2. The method of claim 1 , wherein the pathogen diagnostic assay utilizes isothermal amplification of the RNA.
3. The method of claim 1 , further comprising, determining that the environmental sample is positive for Listeria RNA.
4. The method of claim 1 , further comprising, determining that the environmental sample is negative for Listeria RNA.
5. The method of claim 1 , wherein the collection device is a swab.
6. The method of claim 5 , wherein the swab is cotton or polyester.
7. The method of claim 1 , wherein the collection device is a sponge.
8. The method of claim 1 , wherein the time from collection of the sample to completion of the pathogen diagnostic assay is 1.5 hours or less.
9. The method of claim 1 , wherein the assay is an isothermal amplification assay of sufficient sensitivity to detect as little as 1-2 CFU in the environmental sample.
10. The method of claim 1 , wherein the volume of lysis reagent solution is about 1.0 ml.
11. The method of claim 10 , wherein about 0.5 ml of the sample in lysis reagent solution is used for the pathogen diagnostic assay.
12. The method of claim 1 , wherein the collection device is pre-moistened with letheen broth.