IP Library Granted Patent US 10,227,312
Granted Patent B2
US 10,227,312 · App. 15/556,786 · Granted Mar 12, 2019

Glucosylceramide synthase inhibitors for the treatment of diseases

Inventor: Bing Wang (San Jose, CA)
Assignee: BIOMARIN PHARMACEUTICAL INC.
C07D265/02C07D217/26C07D311/76C07D409/04C07D413/12C07D495/04C07D498/04
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Quick Facts
Patent No.
US 10,227,312
App. No.
15/556,786
Granted
Mar 12, 2019
Kind
B2
Abstract

Described herein are compounds of Formula I, methods of making such compounds, pharmaceutical compositions and medicaments containing such compounds, and methods of using such compounds to treat or prevent diseases or conditions associated with the enzyme glucosylceramide synthase (GCS).

Claims (120)

1. A compound of Formula I:

wherein

R 1 is H; or R 1 and R 2 together form —OCH 2 CH 2 O—;

R 2 is C 3-6 cycloalkyloxy or 3-6 membered heterocycloalkyloxy;

R 3 is H or halogen;

R 4 is H or C 1-4 alkyl;

R 5 and R 5A are each independently H or C 1-4 alkyl;

X is N or O, and when X is N, the dashed line is a bond to form a double bond, and when X is O, the dashed line is not a bond to form a single bond;

Y is C(R 6 ) 2 or O; with the proviso that X and Y are not both O;

R 6 at each occurrence is independently H or C 1-4 alkyl;

Ring A is phenylene, naphthylene, or 5-10 membered heteroarylene;

R 7 at each occurrence is independently halogen, C 1-6 alkyl, C 1-6 alkoxy, C 3-6 cycloalkyloxy, (C 3-6 cycloalkyl)C 1-6 alkoxy, phenyl, or 5-6 membered heteroaryl, wherein the phenyl and heteroaryl are each optionally substituted with 1, 2, or 3 R 8 ;

p is 0, 1, or 2;

R 8 at each occurrence is independently halogen, cyano, amino, C 1-6 alkylamino, C 1-6 dialkylamino, C 1-6 alkyl, C 1-6 alkoxy, C 1-6 haloalkoxy, aminocarbonyl, C 1-6 alkylaminocarbonyl, or C 1-6 dialkylaminocarbonyl;

Ring B is a 4-6 membered heterocycloalkyl ring;

R 9 at each occurrence is independently halogen, OR 10 , or N(R 10 ) 2 ;

R 10 at each occurrence is independently H or C 1-4 alkyl;

q is 0, 1, 2, 3, or 4; and

optionally a single stereoisomer or mixture of stereoisomers thereof and additionally optionally a pharmaceutically acceptable salt thereof.

2. The compound of claim 1 , wherein

R 1 is H; or R 1 and R 2 together form —OCH 2 CH 2 O—;

R 2 is C 3-6 cycloalkyloxy;

R 3 is H, Cl, or F;

R 4 is H or C 1-4 alkyl;

R 5 and R 5A are each independently H or C 1-4 alkyl;

X is N or O, and when X is N, the dashed line is a bond to form a double bond, and when X is O, the dashed line is not a bond to form a single bond;

Y is CH 2 , CH(C 1-4 alkyl), C(C 1-4 alkyl) 2 , or O; with the proviso that X and Y are not both O;

Ring A is phenylene, naphthylene, benzothiophenylene, indazolylene, or quinolylene;

R 7 is Cl, F, C 1-6 alkyl, (C 3-6 cycloalkyl)C 1-6 alkoxy, phenyl, or thienyl, wherein the phenyl and thienyl are each optionally substituted with R 8 ;

R 8 is Cl, F, or C 1-6 alkyl; and

optionally a single stereoisomer or mixture of stereoisomers thereof and additionally optionally a pharmaceutically acceptable salt thereof.

3. The compound of claim 1 , wherein

R 7 at each occurrence is independently halogen, C 1-6 alkyl, phenyl, or 5-6 membered heteroaryl, wherein the phenyl and heteroaryl are each optionally substituted with 1, 2, or 3 R 8 ; and

optionally a single stereoisomer or mixture of stereoisomers thereof and

additionally optionally a pharmaceutically acceptable salt thereof.

4. The compound of claim 3 , wherein

is selected from the group consisting of

wherein the asterix indicates the point of attachment to the rest of the molecule.

5. The compound of claim 3 , wherein Ring A is bicyclic.

6. The compound of claim 3 , wherein Ring A is phenylene, naphthylene, benzothiophenylene, indazolylene, or quinolylene.

7. The compound of claim 3 , wherein Ring A is phenylene and R 7 is phenyl or thienyl, each substituted with halogen.

8. The compound of claim 7 , wherein R 7 is phenyl substituted with Cl or F, or R 7 is thienyl substituted with Cl.

9. The compound of claim 3 , wherein the compound of Formula I is according to Formula I(a):

optionally as a single stereoisomer or mixture of stereoisomers thereof and

additionally optionally as a pharmaceutically acceptable salt thereof.

10. The compound of claim 3 , wherein the compound of Formula I is according to Formula I(b):

optionally as a single stereoisomer or mixture of stereoisomers thereof and

additionally optionally as a pharmaceutically acceptable salt thereof.

11. The compound of claim 3 , wherein the compound of Formula I is according to Formula II:

optionally as a single stereoisomer or mixture of stereoisomers thereof and additionally

optionally as a pharmaceutically acceptable salt thereof.

12. The compound of claim 3 , wherein p is 0 or 1.

13. The compound of claim 12 , wherein q is 0.

14. The compound of claim 1 , wherein the compound of Formula I is according to Formula XIII:

wherein

R 1 is H; or R 1 and R 2 together form —OCH 2 CH 2 O—;

R 2 is C 3-6 cycloalkyloxy;

R 3 is H, Cl, or F;

R 4 is H or C 1-4 alkyl;

R 5 and R 5A are each independently H or C 1-4 alkyl;

X is N or O, and when X is N, the dashed line is a bond to form a double bond, and when X is O, the dashed line is not a bond to form a single bond;

Y is CH 2 , CH(C 1-4 alkyl), C(C 1-4 alkyl) 2 , or O; with the proviso that X and Y are not both O;

Ring A is phenylene, naphthylene, benzothiophenylene, indazolylene, or quinolylene;

R 7 is Cl, F, C 1-6 alkyl, phenyl, or thienyl, where the phenyl and thienyl are each optionally substituted with R 8 ;

R 8 is Cl, F, or C 1-6 alkyl;

n is 1 or 2; and

optionally a single stereoisomer or mixture of stereoisomers thereof and additionally optionally a pharmaceutically acceptable salt thereof.

15. The compound of claim 14 , wherein the Ring A is phenylene, naphthylene or benzothiophenylene.

16. The compound of claim 1 selected from the group consisting of:

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(8-fluoro-2,3-dihydrobenzo[b][1,4]dioxin-6-yl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxypropan-2-yl)-7-(4-fluorophenyl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

7-(5-chlorothiophen-2-yl)-N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrolidin-1-yl)propan-2-yl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxypropan-2-yl)-7-(5-chlorothiophen-2-yl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(5-chlorothiophen-2-yl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl) 1-(4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl-7-(5-chlorothiophen-2 yl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

7-chloro-N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-benzo[4,5]thieno[2,3-d][1,2]oxazine-4-carboxamide;

7-chloro-N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-benzo[4,5]thieno[2,3-d][1,2]oxazine-4-carboxamide;

7-(5-chlorothiophen-2-yl)-N-((1R,2R)-1-(4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxypropan-2-yl)-7-chloro-1H-benzo[4,5]thieno[2,3-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-7-chloro-1H-benzo[4,5]thieno[2,3-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3 (pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-N-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

7-(5-chlorothiophen-2-yl)-N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrolidin-1-yl)propan-2-yl)-N-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-N-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-naphtho[2,3-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-7-(4-fluorophenyl)-N-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-1-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(4-fluorophenyl)-1-methyl-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxyphenyl)-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-10H-[1,2]oxazino[4,5-h]quinoline-7-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-8-fluoro-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxyphenyl)-1-hydroxy-3 (pyrrolidin-1-yl)propan-2-yl)-8-fluoro-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-8-fluoro-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-3(azetidin-1-yl)-1-(4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-8-fluoro-1H-naphtho[2,1-d][1,2]oxazine-4-carboxamide;

8-chloro-N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-thieno[3′,2′:3,4]benzo[1,2-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-methyl-1,7-dihydro-[1,2]oxazino[5,4-e]indazole-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1-methyl-1,9-dihydro-[1,2]oxazino[4,5-g]indazole-6-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-2-methyl-2,9-dihydro-[1,2]oxazino[4,5-g]indazole-6-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-[1,2]oxazino[5,4-f]quinoline-4-carboxamide;

2-chloro-N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-ylpropan-2-yl)-9H-1-thieno[2′,3′:3,4]benzo[1,2-d][1,2]oxazine-6-carboxamide;

N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-6-(4-fluorophenyl)-3,4-dihydroisoquinoline-1-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1 yl)propan-2-yl)-6-(4-fluorophenyl)-N-methyl-3,4-dihydroisoquinoline-1-carboxamide;

N-((1R,2R)-3-(azetidin-1-yl)-1-(4-cyclopropoxyphenyl)-1-hydroxypropan-2-yl)-6-(4-fluorophenyl)-3,4-dihydroisoquinoline-1-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl-6-(4-fluorophenyl)-3,3-dimethyl-3,4-dihydroisoquinoline-1-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-6-(4-fluorophenyl)isochroman-1-carboxamide;

7-chloro-N-(1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrolidin-1-yl)propan-2-yl)-3,4-dihydro-1H-benzo[4,5]thieno[2,3-c]pyran-1-carboxamide;

8-chloro-N-((1R,2R)-1-(4-cyclopropoxyphenyl)-1 hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-1H-thieno[3′,2′:3,4]benzo[1,2-d][1,2]oxazine-4-carboxamide;

N-((1R,2R)-1-(3-chloro-4-cyclopropoxyphenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-7-(cyclohexylmethoxy)-1H-benzo[d][1,2]oxazine-4-carboxamide;

N-(1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrrolidin-1 yl)propan-2-yl)-1-methyl-1,9-dihydro-[1,2]oxazino[4,5-g]indazole-6-carboxamide; and

2-chloro-N-((1R,2R)-1-(4-cyclopropoxy-3-fluorophenyl)-1-hydroxy-3-(pyrrolidin-1-yl)propan-2-yl)-9H-thieno[2,3′:3,4]benzo[1,2-d][1,2]oxazine-6-carboxamide; and

optionally as a single stereoisomer or mixture of stereoisomers thereof and additionally

optionally as a pharmaceutically acceptable salt thereof.

17. A pharmaceutical composition comprising i) a compound of claim 1 optionally as a single stereoisomer or mixture of stereoisomers thereof and additionally optionally as a pharmaceutically acceptable salt thereof, and ii) a pharmaceutically acceptable excipient.

18. A method of treating a disease or disorder comprising administering a compound of claim 1 or the pharmaceutical composition of claim 17 , wherein the disease or disorder is Tay Sachs, Sandhoff's, GM1 gangliosidosis, Fabry, Gaucher, Niemanns-Pick, or polycystic kidney disease.

Assignments (2)
SECURITY INTEREST Recorded Apr 27, 2026
From: BIOMARIN PHARMACEUTICAL INC.; AMICUS THERAPEUTICS, INC.
To: CITIBANK, N.A., AS COLLATERAL AGENT
Reel/Frame 075493/0968 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 21, 2017
From: WANG, BING
To: BIOMARIN PHARMACEUTICAL INC.
Reel/Frame 043658/0607 →
Continuity (2)
Provisional Application 62131703 · Mar 11, 2015
Related Publication 20180044302A1 · Feb 15, 2018