Method for air bubble detection between samples using flow cytometry scatter waveform analysis

1. A method for detecting a separation gas in a fluid flow stream comprising:

generating, with a scatter detector, a scatter voltage output signal indicative of an intensity of scattered light as a flow stream comprising a plurality of samples, each sample separated by a separation gas, passes through a flow cytometer for a period of time;

sampling the scatter voltage output signal; and

recording a timestamp and a voltage value for each sampled voltage of the scatter voltage output signal that is greater than a separation gap threshold, wherein the separation gap threshold has a constant value.

2. The method of claim 1 , further comprising:

comparing each sampled voltage of the scatter voltage output signal to the separation gap threshold.

3. The method of claim 1 , wherein the separation gap threshold has a value at least two times greater than a maximum voltage output of the plurality samples.

4. The method of claim 1 , wherein the recording comprises storing in a memory.

5. The method of claim 1 , wherein each of the plurality of samples is suspected of containing particles of interest.

6. The method of claim 1 , wherein the timestamp comprises a time at which a sampled voltage greater than a separation gap threshold occurred.

7. The method of claim 1 , wherein the sampling occurs at a frequency.

8. The method of claim 7 , wherein the frequency is between 5 kHz and 500 kHz.

9. The method of claim 1 , further comprising:

prior to the generating step, moving the plurality of samples into the flow stream;

inserting the separation gas between adjacent ones of said plurality of samples to separate said samples from each other in said flow stream, said flow stream thereby constituting a gas-separated sample flow stream;

guiding said fluid-separated sample flow stream including the separated samples and the separation fluid to and through the flow cytometer; and

continuously operating the flow cytometer to focus the gas-separated flow stream and to detect scattered light by the scatter detector as the fluid flow stream passes through the flow cytometer.

10. The method of claim 9 , further comprising:

prior to the moving step, obtaining a plurality of samples from a plate having a plurality of sample wells, wherein each sample of the plurality of samples is obtained from a respective well of the plurality of wells.

11. The method of claim 10 , further comprising:

generating separation gas timing data comprising the recorded a voltage value for each sampled voltage of the scatter voltage output signal that is greater than the separation gap threshold and the corresponding timestamp.

12. The method claim 10 , further comprising:

identifying a respective sample well of the plurality of sample wells, based, at least in part, on the separation gas timing data.

13. The method of claim 1 , wherein the scatter detector comprises a forward scatter detector.

14. The method of claim 1 , wherein the scatter detector comprises a side scatter detector.

15. The method of claim 14 , further comprising:

generating, with a side scatter detector, a side scatter voltage output signal indicative of an intensity of side scattered light as the flow stream comprising the plurality of samples, each sample separated by a separation gas, passes through the flow cytometer for the period of time;

generating, with a fluorescence detector, a fluorescence voltage output signal indicative of an intensity of fluorescent light emitted as the flow stream comprising the plurality of samples, each sample separated by a separation gas, passes through the flow cytometer for the period of time; and

generating sample events data based, at least in part on the forward scatter voltage output signal, side scatter voltage output signal and fluorescence voltage output signal.

16. The method of claim 1 , further comprising:

correlating the separation gas timing data and the sample events data based, at least in part, on time.

17. The method of any of claim 1 , further comprising:

plotting the correlated separation gas timing data and the sample events data.

18. A non-transitory computer readable medium having stored therein instructions that are executable to cause a processor to perform the method of claim 1 .

19. A system comprising:

a flow cytometer comprising a scatter detector;

a processor in communication with the output of the scatter detector; and

a non-transitory computer readable medium having stored therein instructions that are executable to cause the processor to perform the method of claim 1 .

20. The system of claim 19 , further comprising:

an autosampler for inserting a plurality of samples comprising particles from a plurality of respective source wells into a fluid flow stream.

21. The system of claim 20 , wherein the flow cytometer is in communication with the autosampler via a conduit and is configured to focus the fluid flow stream delivered by the conduit from the autosampler and selectively analyze the particles in each of the plurality of samples as the fluid flow stream passes through the flow cytometer.

22. The system of claim 20 , further comprising:

a pump for moving the plurality of samples in the fluid flow stream along said single length of tubing,

the autosampler and the pump cooperating to introduce aliquots of a separation fluid between successive ones of the samples in the fluid flow stream to configure the fluid flow stream as a bubble-separated fluid flow stream.

23. The system of claim 19 , wherein the scatter detector comprises a forward scatter detector, and wherein flow cytometer further comprises a side scatter detector and a fluorescence detector.