IP Library Granted Patent US 11,124,482
Granted Patent B2
US 11,124,482 · App. 15/688,310 · Granted Sep 21, 2021

C-met modulators and methods of use

Inventors: Lynne Canne Bannen (New Castle, IN); Diva Sze-Ming Chan (Oakland, CA); Jeff Chen (Honolulu, HI); Lisa Esther Dalrymple (Bothell, WA); Timothy Patrick Forsyth (Hayward, CA); Tai Phat Huynh (Oakland, CA); Vasu Jammalamadaka (Pleasanton, CA); Richard George Khoury (San Mateo, CA); James William Leahy (Tampa, FL); Morrison B. Mac (San Francisco, CA); Grace Mann (San Mateo, CA); Larry W. Mann (Richland, MI); John M. Nuss (Danville, CA); Jason Jevious Parks (Elk Grove, CA); Craig Stacy Takeuchi (Kanagawa-ken, JP); Yong Wang (Foster City, CA); Wei Xu (Danville, CA)
Assignee: Exelixis, Inc.
C07D215/233A61K31/47A61K31/4709A61K31/4725A61K31/496A61K31/501A61K31/505A61K31/506A61K31/517A61K31/5377C07D215/22C07D215/36C07D215/38C07D215/46C07D239/88C07D239/94C07D295/15C07D401/12C07D401/14C07D403/12C07D405/14C07D413/12C07D413/14C07D417/12C12Q1/485G01N2500/04Y02A50/30
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Quick Facts
Patent No.
US 11,124,482
App. No.
15/688,310
Granted
Sep 21, 2021
Kind
B2
Abstract

The present invention provides compounds for modulating protein kinase enzymatic activity for modulating cellular activities such as proliferation, differentiation, programmed cell death, migration and chemoinvasion. More specifically, the invention provides quinazolines and quinolines which inhibit, regulate and/or modulate kinase receptor, particularly c-Met, KDR, c-Kit, flt-3 and flt-4, signal transduction pathways related to the changes in cellular activities as mentioned above, compositions which contain these compounds, and methods of using them to treat kinase-dependent diseases and conditions. The present invention also provides methods for making compounds as mentioned above, and compositions which contain these compounds.

Claims (107)

1. A compound of Formula XXI,

or a pharmaceutically acceptable salt thereof, wherein,

each R 1 is independently selected from halogen, —OR 3 , —NO 2 , —NH 2 , —NR 3 R 3 , -D-R 50 and optionally substituted C 1-6 alkyl;

there is one of R 1 that is -D-R 50 and another of R 1 that is —OR 3a ;

D is —O—;

—O—R 50 and —OR 3a are interchangeably located at the 6-position and 7-position of the compound of Formula XXI;

—OR 3a is selected from —OH, —OSi(R 5 )(R 5 )R 5 , and optionally substituted —OC 1-6 alkyl;

R 70 is selected from —H, halogen, —OR 3 , —S(O) 0-2 R 3 , —NO 2 , —NH 2 , —NR 3 R 3 , and optionally substituted C 1-6 alkyl;

J is N—;

Z is either —O— or —NR 5 —;

each R 5 is independently selected from —H, optionally substituted C 1-6 alkyl, optionally substituted aryl, and optionally substituted aryl C 1-6 alkyl;

Ar is para-phenylene as defined by the substitution pattern of —Z— and -B-L-T about said phenylene;

R 2 is selected from —H, halogen,

trihalomethyl, —CN, —NO 2 , —NH 2 , —OR 3 , —NR 3 R 3 , —S(O) 0-2 R 3 , —SO 2 NR 3 R 3 , —CO 2 R 3 , —C(O)NR 3 R 3 , —N(R 3 )SO 2 R 3 , —N(R 3 )C(O)R 3 , —N(R 3 )CO 2 R 3 , —C(O)R 3 , and optionally substituted C 1-6 alkyl;

each R 3 is independently selected from —H, —Si(R 5 )(R 5 )R 5 , optionally substituted lower alkyl, optionally substituted aryl, optionally substituted arylalkyl, and optionally substituted heteroarylalkyl; or

two R 3 , together with the nitrogen to which they are attached, form a four- to seven-membered heteroalicyclic, said four- to seven-membered heteroalicyclic optionally containing one additional heteroatom; when one said additional heteroatom is a nitrogen, then said nitrogen is optionally substituted with a group selected from —H,

trihalomethyl, —SO 2 R 5 , —SO 2 NR 5 R 5 , —CO 2 R 5 , —C(O)NR 5 R 5 , —C(O)R 5 , and optionally substituted lower alkyl;

-B-L-T is either of formula XXV or formula XXVI,

each R 20 is independently selected from —H, halogen,

trihalomethyl, —CN, —NO 2 , —NH 2 , —OR 3 , —NR 3 R 3 , —S(O) 0-2 R 3 , —SO 2 NR 3 R 3 , —CO 2 R 3 , —C(O)NR 3 R 3 , —N(R 3 )SO 2 R 3 , —N(R 3 )C(O)R 3 , —N(R 3 )CO 2 R 3 , —C(O)R 3 , optionally substituted C 1-6 alkyl, optionally substituted aryl, optionally substituted aryl C 1-6 alkyl, optionally substituted heterocyclyl, and optionally substituted heterocyclyl C 1-6 alkyl; or

two of R 20 , together with the atom or atoms to which they are attached, combine to form an optionally substituted three- to seven-membered heteroalicyclic, said optionally substituted three- to seven-membered heteroalicyclic either Spiro- to, or fused to, the ring system to which it is attached;

G is either an optionally substituted cycloalkyl or an optionally substituted heteroalicyclic;

each R 30 is independently selected from halogen,

trihalomethyl, —CN, —NO 2 , —NH 2 , —OR 3 , —NR 3 R 3 , —S(O) 0-2 R 3 , —SO 2 NR 3 R 3 , —CO 2 R 3 , —C(O)NR 3 R 3 , —N(R 3 )SO 2 R 3 , —N(R 3 )C(O)R 3 , —N(R 3 )CO 2 R 3 , —C(O)R 3 , and optionally substituted C 1-6 alkyl;

R 13a and R 13b are each independently selected from —H and optionally substituted C 1-6 alkyl;

R 50 is either R 3 or formula XXIV;

wherein X 1 , X 2 , and optionally X 3 , represent the atoms of a saturated bridged ring system, said saturated bridged ring system comprising up to four annular heteroatoms represented by any of X 1 , X 2 , and X 3 ; wherein,

each X 1 is independently selected from —C(R 6 )R 7 —, —O—, —S(O) 0-2 —, and —NR 8 —;

each X 2 is independently an optionally substituted bridgehead methine or a bridgehead nitrogen;

each X 3 is independently selected from —C(R 6 )R 7 —, —O—, —S(O) 0-2 —, and —NR 8 —;

Y is either:

an optionally substituted C 1-6 alkylene linker, between D and either 1) any annular atom of the saturated bridged ring system, except X 2 when X 2 is a bridgehead nitrogen, or 2) any heteroatom, represented by any of R 6 or R 7 ; provided there are at least two carbon atoms between D and any annular heteroatom of the saturated bridged ring system or any heteroatom represented by any of R 6 or R 7 ;

or Y is absent, when Y is absent, said saturated bridged ring system, is directly attached to D via an annular carbon of said saturated bridged ring system;

m and p are each independently one to four;

n is zero to two, when n is zero, then there is a single bond between the two bridgehead X 2 's;

R 6 and R 7 are each independently selected from —H, halogen,

trihalomethyl, —CN, —NH 2 , —NO 2 , —OR 3 , —NR 3 R 3 , —S(O) 0-2 R 3 , —SO 2 NR 3 R 3 , —CO 2 R 3 , —C(O)NR 3 R 3 , —N(R 3 )SO 2 R 3 , —N(R 3 )C(O)R 3 , —NCO 2 R 3 , —C(O)R 3 , optionally substituted C 1-6 alkyl, optionally substituted aryl, optionally substituted aryl C 1-6 alkyl, optionally substituted heterocyclyl, optionally substituted heterocyclyl C 1-6 alkyl, and a bond to either Y or D; or

R 6 and R 7 , when taken together are oxo; or

R 6 and R 7 , when taken together with a common carbon to which they are attached, form an optionally substituted three- to seven-membered spirocyclyl, said optionally substituted three- to seven-membered spirocyclyl optionally containing at least one additional annular heteroatom selected from N, O, S, and P; and

R 8 is selected from —R 3 , Y, —SO 2 NR 3 R 3 , —CO 2 R 3 , —C(O)NR 3 R 3 , —SO 2 R 3 , and —C(O)R 3 .

2. The compound according to claim 1 which is a compound of formula XXIa,

wherein R 70 is selected from —H, —NO 2 , —NH 2 , and —NR 3 R 3 ; provided when Z is —N(R 5 )— that R 5 is selected from —H, C 1-3 alkyl, and aryl C 1-3 alkyl.

3. The compound according to claim 2 , wherein Z is —O—;

R 70 is —H; and

R 2 is selected from C 1-6 alkyl, perfluoro C 1-6 alkyl, and halogen.

4. The compound according to claim 3 which is a compound of formula XXIb

5. The compound according to claim 4 , wherein R 2 , if present, is halogen.

6. The compound according to claim 5 , wherein R 2 , if present, is fluorine.

7. The compound according to claim 6 , wherein R 2 , if present, is up to two fluorines ortho to the oxygen of the phenylene to which R 2 is attached.

8. The compound according to any one of claims 1 - 7 , wherein each R 20 is independently selected from —H, halogen, trihalomethyl, optionally substituted C 1-6 alkyl, optionally substituted aryl, optionally substituted aryl C 1-6 alkyl, optionally substituted heterocyclyl, and optionally substituted heterocyclyl C 1-6 alkyl.

9. The compound according to claim 1 , as depicted in Table 2, or a pharmaceutically acceptable salt thereof:

TABLE 2

Entry

Name

Structure

13

N-(4-{[6,7- bis(methyloxy)quinazolin- 4-yl]oxy}phenyl)-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

14

N-(4-{[6,7- bis(methyloxy)quinazolin- 4-yl]oxy}-3- fluorophenyl)-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

15

N-[3-fluoro-4-({6- (methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

21

N-{3-fluoro-4-[(6- (methyloxy)-7-{[(1- methylpiperidin-4- yl)methyl]oxy}quinazolin- 4-yl)oxy]phenyl}-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

26

N-[3-fluoro-4-({7- (methyloxy)-6-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

31

N-{3-fluoro-4-[(7- (methyloxy)-6-{[(1- methylpiperidin-4- yl)methyl]oxy}quinazolin- 4-yl)oxy]phenyl}-N′-(4- fluorophenyl)cyclopropane- 1,1-dicarboxamide

45

N-(4-fluorophenyl)-N′-(4- {[2-methyl-6,7- bis(methyloxy)quinazolin- 4- yl]oxy}phenyl)cyclopropane- 1,1-dicarboxamide

53

(1R,2R)-N-[3-fluoro-4- ({6-(methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)-2- methylcyclopropane-1,1- dicarboxamide

54

(1R,2R)-N-(4-{[7-{[2- (diethylamino)ethyl]oxy}- 6-(methyloxy)quinazolin- 4-yl]oxy}-3- fluorophenyl)-N′-(4- fluorophenyl)-2- methylcyclopropane-1,1- dicarboxamide

69

N-(4-{[7-{[2- (diethylamino)ethyl]oxy}- 6-(methyloxy)quinazolin- 4-yl]oxy}-3- fluorophenyl)-N′-(4- fluorophenyl)cyclobutane- 1,1-dicarboxamide

73

(1R,2R,3S)-N-[3-fluoro- 4-({6-(methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)-2,3- dimethylcyclopropane- 1,1-dicarboxamide

74

(1R,2R,3S)-N-{3-fluoro- 4-[(6-(methyloxy)-7-{[3- (4-methylpiperazin-1- yl)propyl]oxy}quinazolin- 4-yl)oxy]phenyl)-N′-(4- fluorophenyl)-2,3- dimethylcyclopropane- 1,1-dicarboxamide

75

N-[3-fluoro-4-({6- (methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)cyclobutane- 1,1-dicarboxamide

79

N-[3-fluoro-4-({6- (methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)-2,2- dimethylcyclopropane- 1,1-dicarboxamide

84

N-(4-{[7-{[2- (diethylamino)ethyl]oxy}- 6-(methyloxy)quinazolin- 4-yl]oxy}-3- fluorophenyl)-N′-(4- fluorophenyl)-2,2- dimethylcyclopropane- 1,1-dicarboxamide

85

N-(4-{[7-{[3- (diethylamino)propyl]oxy}-6- (methyloxy)quinazolin-4- yl]oxy}-3-fluorophenyl)- N′-(4-fluorophenyl)-2,2- dimethylcyclopropane- 1,1-dicarboxamide

86

N-(4-{[7-{[3- (diethylamino)propyl]oxy}-6- (methyloxy)quinazolin-4- yl]oxy}-3-fluorophenyl)- N′-(4- fluorophenyl)cyclobutane- 1,1-dicarboxamide

87

N-{3-fluoro-4-[(6- (methloxy)-7-{[3-(4- methylpiperazin-1- yl)propyl]oxy}quinazolin- 4-yl)oxy]pheny}-N′-(4- fluorophenyl)cyclobutane- 1,1-dicarboxamide

88

N-[3-fluoro-4-({6- (methyloxy)-7-[(3- piperazin-1- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)cyclobutane- 1,1-dicarboxamide

89

(2R,3R)-N-[3-fluoro-4- ({6-(methyloxy)-7-[(3- morpholin-4- ylpropyl)oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)-2,3- dimethylcyclopropane- 1,1-dicarboxamide

92

(1R,2R)-N-(4-{[7-{[3- (diethylamino)propyl]oxy}-6- (methyloxy)quinazolin-4- yl]oxy}-3-fluorophenyl)- N′-(4-fluorophenyl)-2- methylcyclopropane-1,1- dicarboxamide

93

(1R,2R)-N-{3-fluoro-4- [(6-(methyloxy)-7-{[3-(4- methylpiperazin-1- yl)propyl]oxy}quinazolin- 4-yl)oxy]phenyl}-N′-(4- fluorophenyl)-2- methylcyclopropane-1,1- dicarboxamide

94

(2R,3R)-N-(4-{[7-{[2- (diethylamino)ethyl]oxy}- 6-(methyloxy)quinazolin- 4-yl]oxy}-3- fluorophenyl)-N′-(4- fluoropheny)-2,3- dimethylcyclopropane- 1,1-dicarboxamide

95

(2R,3R)-N-(4-{[7-{[3- (diethylamino)propyl]oxy}-6- (methyloxy)quinazolin-4- yl]oxy}-3-fluorophenyl)- N′-(4-fluorophenyl)-2,3- dimethylcyclopropane- 1,1-dicarboxamide

96

(1R,2R)-N-[3-fluoro-4- ({6-(methyloxy)-7-[(3- piperazin-1- ylpropyl}oxy]quinazolin- 4-yl}oxy)phenyl]-N′-(4- fluorophenyl)-2- methylcyclopropane-1,1- dicarboxamide

10. A pharmaceutical composition comprising a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient or carrier.

11. A pharmaceutical composition comprising a compound of claim 9 , or a pharmaceutically acceptable salt thereof, and a pharmaceutical acceptable excipient or carrier.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 30, 2018
From: BANNEN, LYNNE CANNE; CHAN, DIVA SZE-MING; CHEN, JEFF; DALRYMPLE, LISA ESTHER; FORSYTH, TIMOTHY PATRICK; HUYNH, TAI PHAT; JAMMALAMADAKA, VASU; KHOURY, RICHARD GEORGE; LEAHY, JAMES WILLIAM; MAC, MORRISON B.; MANN, GRACE; MANN, LARRY W.; NUSS, JOHN M.; PARKS, JASON JEVIOUS; TAKEUCHI, CRAIG STACY; WANG, YONG; XU, WEI
To: EXELIXIS, INC.
Reel/Frame 046497/0846 →
Continuity (7)
Continuation 14847801 · Sep 8, 2015
Continuation 11586751 · Oct 26, 2006
Continuation 10573336
Provisional Application 60577384 · Jun 4, 2004
Provisional Application 60535377 · Jan 9, 2004
Provisional Application 60506181 · Sep 26, 2003
Related Publication 20170355678A1 · Dec 14, 2017
Cited By (5)
US 12,415,784 US 12,516,025 US 12,516,026 US 12,522,567 US 12,552,749