IP Library Granted Patent US 11,147,886
Granted Patent B2
US 11,147,886 · App. 15/741,984 · Granted Oct 19, 2021

Drug-conjugated bi-specific antigen-binding constructs

Inventors: Gordon Yiu Kon Ng (Vancouver, CA); Leonard G. Presta (San Francisco, CA); Thomas Spreter Von Kreudenstein (Vancouver, CA)
Assignee: Zymeworks Inc.
A61K47/6803A61K39/3955A61K39/39558A61K45/06A61K47/6811A61K47/6817A61K47/6835A61K47/6849A61K47/6855A61K47/6869A61K47/6879A61K51/103A61K51/1027A61K51/1042A61K51/1051A61K51/1072A61P35/00A61P35/02A61P35/04C07K16/28C07K16/2803C07K16/2809C07K16/2863C07K16/32C07K16/46C40B40/02C40B40/08A61K2039/505A61K2039/572C07K2317/21C07K2317/24C07K2317/31C07K2317/33C07K2317/52C07K2317/524C07K2317/526C07K2317/53C07K2317/55C07K2317/56C07K2317/565C07K2317/622C07K2317/71C07K2317/73C07K2317/75C07K2317/76C07K2317/77C07K2317/92C07K2317/94C07K2319/00
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Quick Facts
Patent No.
US 11,147,886
App. No.
15/741,984
Granted
Oct 19, 2021
Kind
B2
Abstract

Bispecific antigen-binding constructs e.g., antibodies conjugated to drugs (ADCs), which bind CD3 and other cell-surface target antigen such as tumor antigens e.g., CD19, CDH3, HER2, HER3 and EGFR antigens and methods of use are disclosed.

Claims (25)

1. A method of killing target cells that express a target antigen on the cell surface comprising:

contacting the target cells with an effective amount of a drug-conjugated antigen-binding construct in the presence of effector T cells, wherein the drug-conjugated antigen-binding construct comprises an antigen binding construct conjugated to mertansine (DM1) with a N-succinimidyl 4-(maleimidomethyl)cyclohexanecarboxylate (SMCC) linker and the antigen-binding polypeptide construct comprises a first antigen-binding polypeptide construct operably linked to a second antigen-binding polypeptide construct, wherein

the first antigen-binding polypeptide construct specifically binds a CD3 epsilon antigen expressed on the effector T cells and is an scFv and comprises a first heavy chain variable (VH) region comprising SEQ ID NO:213 and a first light chain variable (VL) region comprising SEQ ID NO:221; and

the second antigen-binding polypeptide construct comprising a second VH region comprising a CDR1, a CDR2, and a CDR3 and a second VL region comprising a CDR1, a CDR2, and a CDR3, wherein the second antigen binding polypeptide is an scFv or a Fab and specifically binds the target antigen and

the target antigen is CD19, and the second VH CDR1 comprises SEQ ID NO:591, the second VH CDR2 comprises SEQ ID NO:595, the second VH CDR3 comprises SEQ ID NO:593, the second VL CDR1 comprises SEQ ID NO:607, the second VL CDR2 comprises SEQ ID NO:611, and the second VL CDR3 comprises SEQ ID NO:609; or

the target antigen is CDH3, and the second VH CDR1 comprises SEQ ID NO:139, the second VH CDR2 comprises SEQ ID NO:143, the second VH CDR3 comprises SEQ ID NO:141, the second VL CDR1 comprises SEQ ID NO:683, the second VL CDR2 comprises SEQ ID NO:687, and the second VL CDR3 comprises SEQ ID NO:685; or

the target antigen is HER2, and the second VH CDR1 comprises SEQ ID NO:199, the second VH CDR2 comprises SEQ ID NO:203, the second VH CDR3 comprises SEQ ID NO:201, the second VL CDR1 comprises SEQ ID NO:823, the second VL CDR2 comprises SEQ ID NO:827, and the second VL CDR3 comprises SEQ ID NO:825; or

the target antigen is HER3 and the second VH CDR1 comprises SEQ ID NO:667, the second VH CDR2 comprises SEQ ID NO:671, the second VH CDR3 comprises SEQ ID NO:669, the second VL CDR1 comprises SEQ ID NO:795 the second VL CDR2 comprises SEQ ID NO:799, and the second VL CDR3 comprises SEQ ID NO:797; or

the target antigen is EGFR, and the second VH CDR1 comprises SEQ ID NO:651, the second VH CDR2 comprises SEQ ID NO:653, the second VH CDR3 comprises SEQ ID NO:655, the second VL CDR1 comprises SEQ ID NO:403, the second VL CDR2 comprises SEQ ID NO:407, and the second VL CDR3 comprises SEQ ID NO:405.

2. The method of claim 1 , wherein the target cells that express the target antigen on the cell surface are in a subject, and wherein the method comprises administering to the subject an effective amount of the drug-conjugated antigen-binding construct.

3. The method of claim 1 , wherein the second antigen-binding polypeptide is a Fab.

4. The method of claim 1 , wherein the antigen-binding construct further comprises a scaffold operably linking the first and second antigen binding polypeptide constructs.

5. The method of claim 4 , wherein the scaffold is a dimeric Fc.

6. The method of claim 5 , wherein the dimeric Fc is a heterodimeric Fc comprising a first Fc polypeptide linked to the first antigen-binding polypeptide construct with or without a first linker and a second Fc polypeptide linked to the second antigen-binding polypeptide construct with or without a second linker.

7. The method of claim 6 , wherein the first Fc polypeptide is linked to the first antigen-binding polypeptide construct with the first linker and the second Fc polypeptide is linked to the second antigen-binding polypeptide construct with the second linker and the first and second linkers are polypeptides comprising an IgG1 hinge region.

8. The method of claim 6 , wherein the first Fc polypeptide comprises a first modified CH 3 domain comprising T350V_L351Y_F405A_Y407V and the second Fc polypeptide comprises a second modified CH 3 domain comprising T350V_T366L_K392L_T394W using EU numbering.

9. The method of claim 6 , wherein both Fc polypeptides comprise CH 2 domains comprising the amino acid modifications L234A, L235A and D265S wherein the numbering is according to the EU numbering system.

10. The method of claim 1 , wherein the drug to antigen-binding construct ratio (DAR) is in the range of 2 to 4.

11. The method of claim 2 , wherein the subject is a human.

12. The method of claim 1 , wherein the target antigen is CD19 and the second VH comprises SEQ ID NO:589 and the second VL comprises SEQ ID NO:605.

13. A method of killing target cells that express a target antigen on the cell surface, the method comprising contacting the target cells with an effective amount of a drug-conjugated antigen-binding construct in the presence of effector T cells, wherein the drug-conjugated antigen-binding construct comprises an antigen binding construct conjugated to mertansine (DM1) with a N-succinimidyl 4-(maleimidomethyl)cyclohexanecarboxylate (SMCC) linker and the antigen-binding polypeptide construct comprises a first antigen-binding polypeptide construct operably linked to a second antigen-binding polypeptide construct, wherein

the first antigen-binding polypeptide construct specifically binds a CD3 epsilon antigen expressed on the effector T cells and is an scFv and comprises a first heavy chain variable (VH) region comprising SEQ ID NO:877 and a first light chain variable (VL) region comprising SEQ ID NO:885; and

the second antigen-binding polypeptide construct specifically binds the target antigen expressed on the effector T cells and the target antigen is CDH3, and the second antigen-binding polypeptide construct is an scFv or a Fab and comprises a second heavy chain variable (VH) region comprising SEQ ID NO:137 and a second light chain variable (VL) region comprising SEQ ID NO:681.

14. The method of claim 1 , wherein the target antigen is HER2 and the second VH comprises SEQ ID NO:197 and the second VL comprises SEQ ID NO:821.

15. The method of claim 1 , wherein the target antigen is HER3 and the second VH comprises SEQ ID NO:665 and the second VL comprises SEQ ID NO:793.

Assignments (4)
CHANGE OF NAME Recorded Dec 12, 2022
From: ZYMEWORKS INC.
To: ZYMEWORKS BC INC.
Reel/Frame 062116/0071 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNOR: VONKREUDENSTEIN, THOMAS SPRETER DOC DATE: 8/16/2021 SHOULD BE 08/10/2021 PREVIOUSLY RECORDED AT REEL: 057296 FRAME: 0918. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Jan 7, 2022
From: SPRETER VON KREUDENSTEIN, THOMAS
To: ZYMEWORKS INC.
Reel/Frame 059912/0116 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 26, 2021
From: VON KREUDENSTEIN, THOMAS SPRETER
To: ZYMEWORKS INC.
Reel/Frame 057296/0918 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 9, 2018
From: NG, GORDON YIU KON; VON KRUEDENSTEIN, THOMAS SPRETER; PRESTA, LEONARD G.
To: ZYMEWORKS INC.
Reel/Frame 044577/0117 →
Continuity (3)
Provisional Application 62193056 · Jul 15, 2015
Provisional Application 62193569 · Jul 16, 2015
Related Publication 20180193477A1 · Jul 12, 2018
Cited By (1)
US 12,565,529