Disease resistance alleles in soybean

1. A method of producing a soybean plant having increased resistance to stem termination, the method comprising the steps of:

a) isolating a nucleic acid from a soybean plant part;

b) detecting in the nucleic acid of a) a molecular marker within a soy chromosomal interval corresponding to soybean chromosome 19 between and including physical map positions 43,125,672 to 45,473,178, wherein said chromosomal interval comprises at least one of the following alleles: an A at position 207 of SEQ ID NO: 1, a G at position 210 of SEQ ID NO: 2, a G at position 365 of SEQ ID NO: 3, an A at position 61 of SEQ ID NO: 4, an A at position 251 of SEQ ID NO: 5, and a C at position 335 of SEQ ID NO: 6 and, wherein said allele is associated with increased stem termination resistance;

c) selecting a first soybean plant on the basis of the presence of said molecular marker of b);

d) crossing the soybean plant of c) with a second soybean plant not comprising the molecular marker of b); and

e) producing a progeny plant from the cross of d), thereby producing a soybean plant having increased resistance to stem termination,

wherein the progeny plant comprises the molecular marker and at least one of the alleles in b), and

wherein the either first or second soybean plant is an elite soybean plant.

2. The method of claim 1 , wherein the progeny plant is backcrossed by one or more generations.

3. The method of claim 1 , wherein the molecular marker is a single nucleotide polymorphism (SNP), a quantitative trait locus (QTL), an amplified fragment length polymorphism (AFLP), randomly amplified polymorphic DNA (RAPD), a restriction fragment length polymorphism (RFLP) or a microsatellite.

4. The method of claim 1 , wherein the detecting comprises amplifying a marker locus or a portion of the marker locus and detecting the resulting amplified marker amplicon.

5. The method of claim 4 , wherein the amplifying comprises: a) admixing an amplification primer or amplification primer pair with a nucleic acid isolated from the first soybean plant or germplasm thereof, wherein the primer or primer pair is complementary or partially complementary to at least a portion of the marker locus, and is capable of initiating DNA polymerization by a DNA polymerase using the soybean nucleic acid as a template; and, b) extending the primer or primer pair in a DNA polymerization reaction comprising a DNA polymerase and a template nucleic acid to generate at least one amplicon.

6. The method of claim 4 , wherein the amplifying comprises employing a polymerase chain reaction (PCR) or ligase chain reaction (LCR) using a nucleic acid isolated from a soybean plant or germplasm thereof as a template in the PCR or LCR.

7. The method of claim 1 , wherein said chromosomal interval comprises at least two of the alleles.

8. The method of claim 1 , wherein said chromosomal interval comprises at least three of the alleles.

9. The method of claim 1 , wherein said chromosomal interval comprises at least four of the alleles.

10. The method of claim 1 , wherein said chromosomal interval comprises at least five of the alleles.

11. The method of claim 1 , wherein said chromosomal interval comprises all of the alleles.