IP Library Granted Patent US 10,640,506
Granted Patent B2
US 10,640,506 · App. 16/047,544 · Granted May 5, 2020

Cyclobutyl substituted pyrrolopyridine and pyrrolopyrimidines derivatives as JAK inhibitors

Inventors: James D. Rodgers (Jupiter, FL); Stacey Shepard (Wilmington, DE); Lixin Shao (Wilmington, DE); Joseph Glenn (Mount Royal, NJ)
Assignees: Incyte Holdings Corporation; Incyte Corporation
C07D487/04A01N43/90A61K31/519A61P19/02A61P27/04A61P29/00A61P35/04C07D471/04C07D491/107
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Quick Facts
Patent No.
US 10,640,506
App. No.
16/047,544
Granted
May 5, 2020
Kind
B2
Abstract

The present invention provides cyclobutyl substituted pyrrolopyrimidines and pyrrolopyridines of Formula I: wherein X, Y, Z, L, A, R 5 , n and m are defined above, as well as their compositions and methods of use, that modulate the activity of Janus kinases (JAKs) and are useful in the treatment of diseases related to the activity of JAKs including, for example, inflammatory disorders, autoimmune disorders, cancer, and other diseases.

Claims (74)

1. A compound of Formula I:

or a pharmaceutically acceptable salt thereof; wherein:

X is N;

Y is H, cyano, halo, C 1-3 alkyl, or C 1-3 haloalkyl;

Z is CR 4 ;

W is N;

L is C(R 6 ) 2 , C(═O), C(═O)O, C(═O)N(R 7 ), C(═O)C(R 6 ) 2 , S(═O), S(═O) 2 , S(═O)N(R 7 ), S(═O) 2 N(R 7 ), or C(═NR 7a )N(R 7 );

R 1 , R 2 , R 3 , and R 4 are each independently H, hydroxy, halo, C 1-3 alkyl, or C 1-3 haloalkyl;

each R 5 is independently hydroxy, C 1-4 alkoxy, fluorine, C 1-4 alkyl, hydroxy-C 1-4 -alkyl, C 1-4 alkoxy-C 1-4 -alkyl, or C 1-4 fluoroalkyl;

each R 6 is, independently, H or C 1-4 alkyl; or

two R 6 groups, together with the carbon atom to which they are attached, form a 3-, 4-, 5-, or 6-membered cycloalkyl ring;

R 7 is H or C 1-4 alkyl;

R 7a is H, OH, CN, C 1-4 alkoxy, or C 1-4 alkyl;

or R 7 and R 7a , taken together with the C(═N)N moiety to which they are attached, form a 4-, 5-, 6-, or 7-membered heterocycloalkyl ring or a 5- or 6-membered heteroaryl ring;

A is H, C 1-6 alkyl, C 3-10 cycloalkyl, C 2-10 heterocycloalkyl, C 6-10 aryl, or C 1-10 heteroaryl;

wherein said C 1-6 alkyl, C 3-10 cycloalkyl, C 2-10 heterocycloalkyl, C 6-10 aryl, and C 1-10 heteroaryl are each optionally substituted with p independently selected R 8 substituents; wherein p is 1, 2, 3, 4, or 5; provided when L is O, S, C(═O), C(═O)O, S(═O), or S(═O) 2 , then A is not H;

each R 8 is independently selected from halo, cyano, nitro, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, C 1-10 heteroaryl-C 1-4 -alkyl, —OR a , —SR a , —S(═O) 2 R b , —S(═O) 2 R b , —S(═O) 2 NR e R f , —C(═O)R b , —C(═O)OR a , —C(═O)NR e R f , —OC(═O)R b , —OC(═O)NR e R f , —NR e R f , —NR c C(═O)R d , —NR c C(═O)OR d , —NR c S(═O) 2 R d , and —NR c S(═O) 2 NR e R f ; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, and C 1-10 heteroaryl-C 1-4 -alkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R g groups;

each R a , R c , R d , R e , and R f is independently selected from H, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, and C 1-10 heteroaryl-C 1-4 -alkyl; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, and C 1-10 heteroaryl-C 1-4 -alkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R g groups;

each R b is independently selected from C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, and C 1-10 heteroaryl-C 1-4 -alkyl; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-10 cycloalkyl, C 3-10 cycloalkyl-C 1-4 -alkyl, C 2-10 heterocycloalkyl, C 2-10 heterocycloalkyl-C 1-4 -alkyl, C 6-10 aryl, C 6-10 aryl-C 1-4 -alkyl, C 1-10 heteroaryl, and C 1-10 heteroaryl-C 1-4 -alkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R g groups;

each R g is independently selected from halo, cyano, nitro, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C 1-3 -alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, C 1-7 heteroaryl-C 1-3 -alkyl, —OR a1 , —SR a1 , —S(═O)R b1 , —S(═O) 2 R b1 , —S(═O) 2 NR e1 R f1 , —C(═O)R b1 , —C(═O)OR a1 , —C(═O)NR e1 R f1 , —OC(═O)R b1 , —OC(═O)NR e1 R f1 , —NR e1 R f1 , —NR c1 C(═O)R d1 , —NR c1 C(═O)OR d1 , —NR c1 S(═O) 2 R d1 , and —NR c1 S(═O) 2 NR e1 R f1 ; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C 1-3 -alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, and C 1-7 heteroaryl-C 1-3 -alkyl are each optionally substituted with 1, 2, 3, or 4 independently selected R h groups;

each R a1 , R c1 , R d1 , R e1 , and R f1 is independently selected from H, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C3-alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, and C 1-7 heteroaryl-C 1-3 -alkyl; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C 1-3 -alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, and C 1-7 heteroaryl-C 1-3 -alkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R h groups;

each R b1 is independently selected from C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C 1-3 -alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, and C 1-7 heteroaryl-C 1-3 -alkyl; wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-7 cycloalkyl, C 3-7 cycloalkyl-C 1-3 -alkyl, C 2-7 heterocycloalkyl, C 2-7 heterocycloalkyl-C 1-3 -alkyl, phenyl, phenyl-C 1-3 -alkyl, C 1-7 heteroaryl, and C 1-7 heteroaryl-C 1-3 -alkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R h groups;

each R h is independently selected from cyano, halo, hydroxy, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, amino, C 1-4 alkylamino, di-C 1-4 -alkylamino, hydroxy-C 1-4 alkyl, C 1-4 alkoxy-C 1-4 alkyl, cyano-C 1-4 alkyl, thio, C 1-6 alkylthio, C 1-6 alkylsulfinyl, C 1-6 alkylsulfonyl, carbamyl, C 1-6 alkylcarbamyl, di(C 1-6 alkyl)carbamyl, carboxy, C 1-6 alkylcarbonyl, C 1-6 alkoxycarbonyl, C 1-6 alkylcarbonylamino, C 1-6 alkylsulfonylamino, aminosulfonyl, C 1-6 alkylaminosulfonyl, di(C 1-6 alkyl)aminosulfonyl, aminosulfonylamino, C 1-6 alkylaminosulfonylamino, di(C 1-6 alkyl)aminosulfonylamino, aminocarbonylamino, C 1-6 alkylaminocarbonylamino, and di(C 1-6 alkyl)aminocarbonylamino;

m is 0, 1, or 2; and

n is 0, 1, 2, 3, or 4.

2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein Z is CH.

3. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein L is C(R 6 ) 2 , C(═O), C(═O)O, C(═O)N(R 7 ), S(═O) 2 , S(═O) 2 N(R 7 ) or C(═NR 7a )N(R 7 ).

4. The compound of claim 3 , or a pharmaceutically acceptable salt thereof, wherein R 6 is H, R 7 is H or methyl, and R 7a is CN.

5. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein Y is cyano.

6. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 1 , R 2 , R 3 , and R 4 are each H.

7. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein n is 0.

8. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein m is 1.

9. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein A is H, methyl, ethyl, propyl, isopropyl, isobutyl, sec-butyl, 1,2-dimethylpropyl, 1-(tert-butyl)methyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, phenyl, a tetrahydropyran ring, a pyrrolidine ring, a piperidine ring, a pyridine ring, a pyrimidine ring, a thiazole ring, or a pyrazine ring; each of which is optionally substituted with p independently selected R 8 substituents; provided when L is O, S, C(═O), C(═O)O, S(═O), or S(═O) 2 , then A is not H.

10. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein each R 8 is independently selected from halo, cyano, C 1-6 alkyl, C 1-6 haloalkyl, C 3-7 cycloalkyl, C 2-7 heterocycloalkyl, —OR a , —C(═O)OR a , or —NR e R f ; wherein said C 1-6 alkyl is optionally substituted by 1, 2, 3, or 4 independently selected R g groups; and wherein each R a , R e , and R f is independently selected from H, C 1-6 alkyl, and C 1-6 haloalkyl.

11. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein each R g is independently selected from C 2-7 heterocycloalkyl, —OR a1 , and —NR e1 R f1 ; wherein said C 2-7 heterocycloalkyl is optionally substituted by 1 or 2 R h groups independently selected from fluoro, OH, C 1-3 alkyl, C 1-3 alkoxy, and hydroxy-C 1-4 alkyl; and wherein each R a1 , R e1 and R f1 are independently selected from H, C 3-7 cycloalkyl, and C 1-6 alkyl.

12. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein each R h is independently selected from fluoro, OH, C 1-3 alkyl, C 1-3 alkoxy, and hydroxy-C 1-4 alkyl.

13. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein:

R 1 , R 2 , and R 3 are each H;

Y is cyano;

L is C(R 6 ) 2 , C(═O), C(═O)N(R′), S(═O) 2 , or S(═O) 2 N(R 7 );

A is C 1-6 alkyl, C 3-10 cycloalkyl, C 2-10 heterocycloalkyl, C 6-10 aryl, or C 1-10 heteroaryl;

wherein said C 1-6 alkyl, C 3-10 cycloalkyl, C 2-10 heterocycloalkyl, C 6-10 aryl, and C 1-10 heteroaryl are each optionally substituted with p independently selected R 8 substituents; wherein p is 1, 2, 3, 4, or 5;

each R 8 is independently selected from halo, cyano, nitro, C 1-6 alkyl, C 1-6 haloalkyl, —OR a , —SR a , —S(═O)R b , —S(═O) 2 R b , —S(═O) 2 NR e R f , —C(═O)R b , —C(═O)OR a , —C(═O)NR e R f , —OC(═O)R b , —OC(═O)NR e R f , —NR e R f , —NR c C(═O)R d , —NR c C(═O)OR d , —NR c S(═O) 2 R d , and —NR c S(═O) 2 NR e R f ;

wherein said C 1-6 alkyl is optionally substituted by 1, 2, 3, or 4 independently selected R g groups;

each R g is independently selected from halo, cyano, C 1-6 alkyl, C 1-6 haloalkyl, C 3-7 cycloalkyl, C 2-7 heterocycloalkyl, —OR a1 , —S(═O) 2 R b1 , —S(═O) 2 NR e1 R f1 , —C(═O)R b1 , —C(═O)OR a1 , and —NR e1 R f1 ; wherein said C 1-6 alkyl, C 3-7 cycloalkyl, and C 2-7 heterocycloalkyl are each optionally substituted by 1, 2, 3, or 4 independently selected R h groups;

each R a , R c , R d , R e , and R f is independently selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;

each R b1 is independently selected from C 1-6 alkyl and C 1-6 haloalkyl;

each R a1 , R e1 , and R f1 is independently selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;

each R b1 is independently selected from C 1-6 alkyl and C 1-6 haloalkyl;

n is 0; and

m is 1.

14. The compound accordingly to claim 1 , or a pharmaceutically acceptable salt thereof, wherein:

R 1 , R 2 , and R 3 are each H;

Y is cyano;

L is C(R 6 ) 2 , C(═O), C(═O)O, C(═O)N(R′), S(═O) 2 , or S(═O) 2 N(R 7 ); or

R 6 is H;

R 7 is H or methyl;

A is methyl, ethyl, propyl, isopropyl, isobutyl, sec-butyl, 1,2-dimethylpropyl, 1-(tert-butyl)methyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, phenyl, a tetrahydropyran ring, a pyrrolidine ring, a piperidine ring, a pyridine ring, a pyrimidine ring, a thiazole ring, or a pyrazine ring; each of which is optionally substituted with p independently selected R 8 substituents;

each R 8 is independently selected from halo, cyano, C 1-6 alkyl, C 1-6 haloalkyl, C 3-7 cycloalkyl, C 2-7 heterocycloalkyl, —OR a , —C(═O)OR a , or —NR e R f ; wherein said C 1-6 alkyl is optionally substituted by 1, 2, 3, or 4 independently selected R g groups; and wherein each R a , R e , and R f is independently selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;

each R g is independently selected from C 2-7 heterocycloalkyl, —OR a1 , and —NR e1 R f1 ;

wherein said C 2-7 heterocycloalkyl is optionally substituted by 1 or 2 R h groups independently selected from fluoro, OH, C 1-3 alkyl, C 1-3 alkoxy, and hydroxy-C 1-4 alkyl; and wherein each R a1 , R e1 and R f1 are independently selected from H, C 3-7 cycloalkyl, and C 1-6 alkyl;

p is 1, 2, or 3;

m is 1; and

n is 0.

15. The compound of claim 1 , selected from:

{cis-3-(4-{[6-(1-hydroxy-1-methylethyl)-2-(trifluoromethyl)pyrimidin-4-yl]carbonyl}piperazin-1-yl)-1-[4-(1H-pyrrolo[2,3-b]pyridin-4-yl)-1H-pyrazol-1-yl]cyclobutyl}acetonitrile;

{trans-3-(4-{[6-(1-hydroxy-1-methylethyl)-2-(trifluoromethyl)pyrimidin-4-yl]carbonyl}piperazin-1-yl)-1-[4-(1H-pyrrolo[2,3-b]pyridin-4-yl)-1H-pyrazol-1-yl]cyclobutyl)}acetonitrile; and

{trans-3-(4-{[4-(1-hydroxy-1-methylethyl)-6-(trifluoromethyl)pyridin-2-yl]carbonyl}piperazin-1-yl)-1-[4-(1H-pyrrolo[2,3-b]pyridin-4-yl)-1H-pyrazol-1-yl]cyclobutyl}acetonitrile;

or a pharmaceutically acceptable salt of any of the aforementioned.

16. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein the cyclobutyl ring in Formula I is the cis form.

17. The compound according to claim 1 , or a pharmaceutically acceptable salt thereof, wherein the cyclobutyl ring in Formula I is the trans form.

18. A composition comprising a compound according to claim 1 , or a pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable carrier.

19. A method of modulating an activity of JAK1 comprising contacting JAK1 with a compound according to claim 1 , or a pharmaceutically acceptable salt thereof.

20. The method according to claim 19 , wherein said compound, or pharmaceutically acceptable salt thereof, is selective for JAK1 over JAK2.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 4, 2018
From: INCYTE CORPORATION
To: INCYTE HOLDINGS CORPORATION; INCYTE CORPORATION
Reel/Frame 046778/0117 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 30, 2018
From: RODGERS, JAMES D.; SHEPARD, STACEY; ZHU, WENYU; SHAO, LIXIN; GLENN, JOSEPH
To: INCYTE CORPORATION
Reel/Frame 046753/0131 →
Continuity (4)
Continuation 14556775 · Dec 1, 2014
Division 13300094 · Nov 18, 2011
Provisional Application 61415705 · Nov 19, 2010
Related Publication 20190135813A1 · May 9, 2019
Cited By (4)
US 12,428,426 US 12,440,495 US 12,479,851 US 12,509,463