IP Library Granted Patent US 11,136,615
Granted Patent B2
US 11,136,615 · App. 16/053,413 · Granted Oct 5, 2021

Compositions and methods for stabilizing benzothiazole luciferin analogs

Inventors: Ce Shi (San Luis Obispo, CA); Mary P. Hall (Waunakee, WI); Thomas A. Kirkland (Atascadero, CA); Lance P. Encell (Fitchburg, WI); Poncho Meisenheimer (San Luis Obispo, CA); Wenhui Zhou (San Luis Obispo, CA)
Assignee: PROMEGA CORPORATION
C12Q1/66C07D253/06C07D417/04
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Quick Facts
Patent No.
US 11,136,615
App. No.
16/053,413
Granted
Oct 5, 2021
Kind
B2
Abstract

Disclosed herein are compositions and methods for stabilizing a benzothiazole luciferin analog such as D-luciferin and 6-amino-D-luciferin. The compositions may include the benzothiazole luciferin analog, a thionucleobase compound of formula (I), and a liquid medium, in which the thionucleobase is present in an amount effective to stabilize the luminogenic composition against decomposition. The methods provided herein may stabilize the benzothiazole luciferin analog against decomposition by contacting the benzothiazole luciferin analog with an effective amount of the thionucleobase compound in the presence of a liquid medium. Also provided herein is a kit containing the composition.

Claims (99)

1. A composition comprising

(a) a benzothiazole luciferin analog, or salt thereof, wherein the benzothiazole luciferin analog is a compound of formula (II′)

wherein:

is

R 1′ is H, C 1 -C 4 alkyl, —C 2 -C 4 alkylene-OH, —C 2 -C 4 alkylene-OC 1 -C 4 alkyl, C 3 -C 7 cycloalkyl, aryl, benzyl or substituted benzyl, heterocyclyl, heteroaryl, or —(CH 2 ) q —P(Ph) 3 , wherein q is an integer selected from 1, 2, 3, 4, 5, and 6;

R 2′ is hydrogen, halogen, C 1 -C 4 alkyl, or C 1 -C 4 haloalkyl;

R 3′ is hydrogen, halogen, C 1 -C 4 alkyl, or C 1 -C 4 haloalkyl;

R 4′ is —XG or —XG 1 ;

R 5′ is hydrogen, halogen, C 1 -C 4 alkyl, or C 1 -C 4 haloalkyl;

R 10′ , at each occurrence is independently halo, —SO 3 H, C 1 -C 10 alkyl, —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), or —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl);

R 11′ is —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl), —OG 1 , —NHG 1 , or —N(C 1 -C 10 alkyl)G 1 ;

n is 0 to 5;

X is —O— or —N(G)-;

G, at each occurrence is independently H, C 1 -C 12 alkyl, or together with one of R 3′ or R 5′ forms a 5- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); or two G together with the nitrogen atom to which they are attached form a 4- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl);

G 1 comprises an enzyme substrate, wherein biotransformation of the enzyme substrate by an enzyme converts G 1 to H; and

W 1 and W 2 are each independently hydrogen, C 1 -C 4 alkyl, or arylalkyl; or W 1 and W 2 together with the carbon to which they are attached form a C 3 -C 8 cycloalkyl or a 4- to 8-membered heterocycle, the cycloalkyl and heterocycle being optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); and

(b) an effective amount of a compound of formula (I) or a tautomer thereof,

wherein

R 1 is hydrogen, optionally substituted alkyl, optionally substituted arylalkyl, optionally substituted heteroarylalkyl, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heteroaryl, carboxylic acid, ester, NR a R b , optionally substituted imine, hydroxyl, or oxo;

R 2 is hydrogen, NR a R b , optionally substituted imine, optionally substituted alkyl, or optionally substituted aryl;

R a and R b , at each occurrence, are each independently hydrogen, optionally substituted alkyl, or optionally substituted aryl; and

(c) optionally, a liquid medium

wherein when the liquid medium is absent, the benzothiazole luciferin analog and the compound of formula (I) form a solid mixture;

wherein when the liquid medium is present, and when the compound of formula (I) is 6-methyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one (ATT), the liquid medium is free of dimethyl sulfoxide (DMSO).

2. The composition of claim 1 , wherein W 1 and W 2 are each independently C 1 -C 4 alkyl.

3. The composition of claim 1 , wherein the benzothiazole luciferin analog is a compound of formula (II)

wherein:

is

R 1′ is H, C 1 -C 4 alkyl, —C 2 -C 4 alkylene-OH, —C 2 -C 4 alkylene-OC 1 -C 4 alkyl, C 3 -C 7 cycloalkyl, aryl, benzyl or substituted benzyl, heterocyclyl, heteroaryl, or —(CH 2 ) q —P(Ph) 3 , wherein q is an integer selected from 1, 2, 3, 4, 5, and 6;

R 2′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 3′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 4′ is —XG or —XG 1 ;

R 5′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 10′ , at each occurrence is independently halo, —SO 3 H, C 1 -C 10 alkyl, —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), or —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl);

R 11′ is —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl), —OG 1 , —NHG 1 , or —N(C 1 -C 10 alkyl)G 1 ;

n is 0 to 5;

X is —O— or —N(G)-;

G, at each occurrence is independently H, C 1 -C 12 alkyl, or together with one of R 3′ or R 5′ forms a 5- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); or two G together with the nitrogen atom to which they are attached form a 4- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); and

G 1 comprises an enzyme substrate, wherein biotransformation of the enzyme substrate by an enzyme converts G 1 to H.

4. The composition of claim 1 , wherein the composition does not contain a luminogenic enzyme.

5. The composition of claim 1 , wherein the benzothiazole luciferin analog is stabilized against decomposition.

6. The composition of claim 1 , wherein R 1′ is H.

7. The composition of claim 1 , wherein R 2′ is H, R 3′ is H, and R 5′ is H.

8. The composition of claim 1 , wherein R 4′ is —OH or —NH 2 .

9. The composition of claim 1 , wherein the effective amount of the compound of formula (I) is greater than 0.1 mM.

10. The composition of claim 1 , wherein the compound of formula (I) is selected from the group consisting of: ATT, ATCA, 3-(4-Amino-5-oxo-3-thioxo-2,3,4,5-tetrahydro-1,2,4-triazin-6-yl)propanoic acid, tetrahydro-2-methyl-3-thioxo-1,2,4-triazine-5,6-dione, 4-((2-furylmethylene)amino)-3-mercapto-6-methyl-1,2,4-triazin-5(4H)-one, 6-benzyl-3-sulfanyl-1,2,4-triazin-5-ol, 4-amino-3-mercapto-6-methyl-1,2,4-triazin-5(4H)-one, 3-(5-oxo-3-thioxo-2,3,4,5-tetrahydro-1,2,4-triazin-6-yl)propanoic acid, (E)-6-methyl-4-((thiophen-2-ylmethylene)amino)-3-thioxo-3,4-dihydro-1,2,4-triazin-5 (2H)-one, (E)-6-methyl-4-((3-nitrobenzylidene)amino)-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one, (E)-4-((4-(diethylamino)benzylidene)amino)-6-methyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5 (2H)-one, ATCA ethyl ester, TAK-0014, TAK-0002, TAK-0021, TAK-0020, TAK-0018, TAK-0009, TAK-0007, TAK-0008, TAK-0003, TAK-0004, 3-thioxo-6-(trifluoromethyl)-3,4-dihydro-1,2,4-triazin-5(2H)-one, 6-cyclopropyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one, and 6-(hydroxymethyl)-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one.

11. The composition of claim 1 , wherein the liquid medium is absent.

12. The composition of claim 1 , wherein the liquid medium is present.

13. The composition of claim 12 , wherein the compound of formula (I) is not ATT.

14. The composition of claim 13 , wherein the liquid medium comprises an organic solvent selected from the group consisting of alcohol, propylene glycol, dimethyl sulfoxide (DMSO), acetonitrile, glycerol, and any combination thereof.

15. The composition of claim 12 , wherein the compound of formula (I) is ATT, and wherein the liquid medium comprises an organic solvent selected from the group consisting of alcohol, propylene glycol, acetonitrile, glycerol, and any combination thereof.

16. A method for stabilizing a benzothiazole luciferin analog, the method comprising contacting a benzothiazole luciferin analog, or salt thereof, with an effective amount of a compound of formula (I) or a tautomer thereof, whereby the benzothiazole luciferin analog, or salt thereof, is stabilized against decomposition,

wherein the benzothiazole luciferin analog is a compound of formula (II′)

wherein:

is

R 1′ is H, C 1 -C 4 alkyl, —C 2 -C 4 alkylene-OH, —C 2 -C 4 alkylene-OC 1 -C 4 alkyl, C 3 -C 7 cycloalkyl, aryl, benzyl or substituted benzyl, heterocyclyl, heteroaryl, or —(CH 2 ) q —P(Ph) 3 , wherein q is an integer selected from 1, 2, 3, 4, 5, and 6;

R 2′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 3′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 4′ is —XG or —XG 1 ;

R 5′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 10′ , at each occurrence is independently halo, —SO 3 H, C 1 -C 10 alkyl, —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), or —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl);

R 11′ is —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl), —OG 1 , —NHG 1 , or —N(C 1 -C 10 alkyl)G 1 ;

n is 0 to 5;

X is —O— or —N(G)-;

G, at each occurrence is independently H, C 1 -C 12 alkyl, or together with one of R 3′ or R 5′ forms a 5- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); or two G together with the nitrogen atom to which they are attached form a 4- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl);

G 1 comprises an enzyme substrate, wherein biotransformation of the enzyme substrate by an enzyme converts G 1 to H; and W 1 and W 2 are each independently hydrogen, C 1 -C 4 alkyl, or arylalkyl; or W 1 and W 2 together with the carbon to which they are attached form a C 3 -C 8 cycloalkyl or a 4- to 8-membered heterocycle, the cycloalkyl and heterocycle being optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); and

wherein the compound of formula (I) is

wherein

R 1 is hydrogen, optionally substituted alkyl, optionally substituted arylalkyl, optionally substituted heteroarylalkyl, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heteroaryl, carboxylic acid, ester, NR a R b , optionally substituted imine, hydroxyl, or oxo;

R 2 is hydrogen, NR a R b , optionally substituted imine, optionally substituted alkyl, or optionally substituted aryl; and

R a and R b , at each occurrence, are each independently hydrogen, optionally substituted alkyl, or optionally substituted aryl.

17. The method of claim 16 , wherein W 1 and W 2 are each independently C 1 -C 4 alkyl.

18. The method of claim 16 , wherein the benzothiazole luciferin analog is a compound of formula (II)

wherein:

is

R 1′ is H, C 1 -C 4 alkyl, —C 2 -C 4 alkylene-OH, —C 2 -C 4 alkylene-OC 1 -C 4 alkyl, C 3 -C 7 cycloalkyl, aryl, benzyl or substituted benzyl, heterocyclyl, heteroaryl, or —(CH 2 ) q —P(Ph) 3 , wherein q is an integer selected from 1, 2, 3, 4, 5, and 6;

R 2′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 3′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 4′ is —XG or —XG 1 ;

R 5′ is hydrogen, halogen, methyl, or trifluoromethyl;

R 10′ , at each occurrence is independently halo, —SO 3 H, C 1 -C 10 alkyl, —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), or —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl);

R 11′ is —OH, —O(C 1 -C 10 alkyl), —NH 2 , —NH(C 1 -C 10 alkyl), —N(C 1 -C 10 alkyl)(C 1 -C 10 alkyl), —OG 1 , —NHG 1 , or —N(C 1 -C 10 alkyl)G 1 ;

n is 0 to 5;

X is —O— or —N(G)-;

G, at each occurrence is independently H, C 1 -C 12 alkyl, or together with one of R 3′ or R 5′ forms a 5- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); or two G together with the nitrogen atom to which they are attached form a 4- to 8-membered monocyclic heterocyclic ring optionally substituted with 1-4 substituents independently selected from the group consisting of C 1 -C 4 alkyl, C 1 -C 4 haloalkyl, halo, hydroxy, oxo, and —O(C 1 -C 4 alkyl); and

G 1 comprises an enzyme substrate, wherein biotransformation of the enzyme substrate by an enzyme converts G 1 to H.

19. The method of claim 16 , wherein the effective amount of the compound of formula (I) is greater than 0.1 mM.

20. The method of claim 16 , wherein the compound of formula (I) is selected from the group consisting of: ATT, ATCA, 3-(4-Amino-5-oxo-3-thioxo-2,3,4,5-tetrahydro-1,2,4-triazin-6-yl)propanoic acid, tetrahydro-2-methyl-3-thioxo-1,2,4-triazine-5,6-dione, 4-((2-furylmethylene)amino)-3-mercapto-6-methyl-1,2,4-triazin-5(4H)-one, 6-benzyl-3-sulfanyl-1,2,4-triazin-5-ol, 4-amino-3-mercapto-6-methyl-1,2,4-triazin-5(4H)-one, 3-(5-oxo-3-thioxo-2,3,4,5-tetrahydro-1,2,4-triazin-6-yl)propanoic acid, (E)-6-methyl-4-((thiophen-2-ylmethylene)amino)-3-thioxo-3,4-dihydro-1,2,4-triazin-5 (2H)-one, (E)-6-methyl-4-((3-nitrobenzylidene)amino)-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one, (E)-4-((4-(diethylamino)benzylidene)amino)-6-methyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5 (2H)-one, ATCA ethyl ester, TAK-0014, TAK-0002, TAK-0021, TAK-0020, TAK-0018, TAK-0009, TAK-0007, TAK-0008, TAK-0003, TAK-0004, 3-thioxo-6-(trifluoromethyl)-3,4-dihydro-1,2,4-triazin-5(2H)-one, 6-cyclopropyl-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one, and 6-(hydroxymethyl)-3-thioxo-3,4-dihydro-1,2,4-triazin-5(2H)-one.

21. The method of claim 16 , wherein the benzothiazole luciferin analog is stabilized against decomposition in the presence of light.

22. The method of claim 16 , wherein the benzothiazole luciferin analog is stabilized against decomposition in the absence of light.

23. The method of claim 16 , wherein the luciferin analog is stabilized against decomposition at temperatures from −80° C. to 60° C.

24. The method of claim 16 , wherein R 1′ is H, R 2′ is H, R 3′ is H, and R 5′ is H.

25. The method of claim 16 , wherein R 4′ is —OH or —NH 2 .

26. The method of claim 16 , wherein the contacting occurs in a solid mixture of the benzothiazole luciferin analog and the compound of formula (I).

27. The method of claim 16 , wherein the contacting occurs in a liquid medium.

28. The method of claim 27 , wherein the compound of formula (I) is not ATT.

29. The method of claim 28 , wherein the liquid medium comprises an organic solvent selected from the group consisting of alcohol, propylene glycol, dimethyl sulfoxide (DMSO), acetonitrile, glycerol, and any combination thereof.

30. The method of claim 27 wherein the compound of formula (I) is ATT, and wherein the liquid medium comprises an organic solvent selected from the group consisting of alcohol, propylene glycol, acetonitrile, glycerol, and any combination thereof.

31. A kit comprising the composition of claim 1 in a single container, wherein the compound of formula (I) stabilizes the benzothiazole luciferin analog.

Assignments (2)
SECURITY INTEREST Recorded Apr 3, 2019
From: PROMEGA CORPORATION; PROMEGA BIOSCIENCES, LLC; TERSO SOLUTIONS, INC.; ORION SEVEN, LLC; PROMEGA AVIATION LLC
To: JPMORGAN CHASE BANK, N.A., AS COLLATERAL AGENT
Reel/Frame 048790/0259 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 29, 2018
From: ENCELL, LANCE P.; HALL, MARY P.; KIRKLAND, THOMAS A.; MEISENHEIMER, PONCHO; SHI, CE; ZHOU, WENHUI
To: PROMEGA CORPORATION
Reel/Frame 047013/0639 →