IP Library Granted Patent US 10,774,315
Granted Patent B2
US 10,774,315 · App. 16/127,288 · Granted Sep 15, 2020

Engineered glucosyltransferases

Inventors: Yougen Li (Pennington, NJ); Ellen D. Semke (Newark, DE); Mark S. Payne (Wilmington, DE); Jared B. Parker (Elkton, MD); Susan Marie Hennessey (Avondale, PA); Slavko Kralj (Copenhagen K, DK); Veli Alkan (Palo Alto, CA); Richard Bott (Palo Alto, CA)
Assignee: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
C12N9/1048C08B37/0009C12N9/1051C12P19/04C12P19/18C12Y204/01G16B25/00
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Quick Facts
Patent No.
US 10,774,315
App. No.
16/127,288
Granted
Sep 15, 2020
Kind
B2
Abstract

Disclosed herein are glucosyltransferases with modified amino acid sequences. Such engineered enzymes synthesize alpha-glucan products having increased molecular weight. Further disclosed are reactions and methods in which engineered glucosyltransferases are used to produce alpha-glucan.

Claims (47)

1. A non-native glucosyltransferase comprising at least one amino acid substitution at a position corresponding with amino acid residue Asn-531, Arg-534, Thr-563, Gln-588, Ile-591, Lys-593, Ile-608, Ala-610, Leu-661, Arg-722, Thr-728, Met-732, Arg-741, Tyr-848, or Ile-1453 of SEQ ID NO:62, wherein the non-native glucosyltransferase synthesizes insoluble alpha-glucan comprising 1,3-linkages, and the molecular weight of said insoluble alpha-glucan is higher than the molecular weight of insoluble alpha-glucan synthesized by a second glucosyltransferase that only differs from the non-native glucosyltransferase at the substitution position(s);

wherein the non-native glucosyltransferase comprises a catalytic domain that is at least 90% identical to residues 55-960 of SEQ ID NO:4, residues 54-957 of SEQ ID NO:65, residues 55-960 of SEQ ID NO:30, residues 55-960 of SEQ ID NO:28, or residues 55-960 of SEQ ID NO:20.

2. The non-native glucosyltransferase of claim 1 , wherein:

(i) the amino acid substitution at the position corresponding with amino acid residue Asn-531 is with a Gly, Leu, or Met residue;

(ii) the amino acid substitution at the position corresponding with amino acid residue Arg-534 is with a Lys, Gly, Ile, Leu, or Met residue;

(iii) the amino acid substitution at the position corresponding with amino acid residue Thr-563 is with an Ala residue;

(iv) the amino acid substitution at the position corresponding with amino acid residue Gln-588 is with a Leu residue;

(v) the amino acid substitution at the position corresponding with amino acid residue Ile-591 is with a Val, Lys, or Arg residue;

(vi) the amino acid substitution at the position corresponding with amino acid residue Lys-593 is with a Met residue;

(vii) the amino acid substitution at the position corresponding with amino acid residue Ile-608 is with a Tyr residue;

(viii) the amino acid substitution at the position corresponding with amino acid residue Ala-610 is with a Cys or Thr residue;

(ix) the amino acid substitution at the position corresponding with amino acid residue Leu-661 is with a Pro residue;

(x) the amino acid substitution at the position corresponding with amino acid residue Arg-722 is with a His or Asn residue;

(xi) the amino acid substitution at the position corresponding with amino acid residue Thr-728 is with a Ser residue;

(xii) the amino acid substitution at the position corresponding with amino acid residue Met-732 is with a Leu residue;

(xiii) the amino acid substitution at the position corresponding with amino acid residue Arg-741 is with a Ser, Ala, Pro, Gln, or Thr residue;

(xiv) the amino acid substitution at the position corresponding with amino acid residue Tyr-848 is with a Glu residue; and/or

(xv) the amino acid substitution at the position corresponding with amino acid residue Ile-1453 is with a Gly or Met residue.

3. The non-native glucosyltransferase of claim 1 , comprising at least one amino acid substitution at a position corresponding with amino acid residue Gln-588, Arg-741, or Arg-722 of SEQ ID NO:62.

4. The non-native glucosyltransferase of claim 3 , comprising two or more amino acid substitutions at positions corresponding with amino acid residues Gln-588, Arg-741, or Arg-722 of SEQ ID NO:62.

5. The non-native glucosyltransferase of claim 1 , wherein the insoluble alpha-glucan comprises at least 50% alpha-1,3 linkages.

6. The non-native glucosyltransferase of claim 5 , wherein the insoluble alpha-glucan has a DP w of at least 100.

7. The non-native glucosyltransferase of claim 1 , comprising a catalytic domain that is at least 92% identical to residues 55-960 of SEQ ID NO:4, residues 54-957 of SEQ ID NO:65, residues 55-960 of SEQ ID NO:30, residues 55-960 of SEQ ID NO:28, or residues 55-960 of SEQ ID NO:20.

8. The non-native glucosyltransferase of claim 1 , comprising an amino acid sequence that is at least 90% identical to SEQ ID NO:4, SEQ ID NO:65, SEQ ID NO:30, SEQ ID NO:28, or SEQ ID NO:20.

9. The non-native glucosyltransferase of claim 5 , wherein the insoluble alpha-glucan comprises at least 90% alpha-1,3 linkages.

10. The non-native glucosyltransferase of claim 1 , wherein the molecular weight of said insoluble alpha-glucan is at least 10% higher than the molecular weight of insoluble alpha-glucan synthesized by said second glucosyltransferase.

11. A polynucleotide comprising a nucleotide sequence encoding a non-native glucosyltransferase according to claim 1 , wherein one or more regulatory sequences are operably linked to the nucleotide sequence.

12. A reaction composition comprising water, sucrose, and a non-native glucosyltransferase according to claim 1 .

13. A method of producing insoluble alpha-glucan comprising:

contacting at least water, sucrose, and a non-native glucosyltransferase enzyme according to claim 1 , whereby insoluble alpha-glucan is produced.

14. The method of claim 13 , wherein the method further comprises isolating the insoluble alpha-glucan.

15. The polynucleotide of claim 11 , wherein said one or more regulatory sequences include a promoter sequence.

16. The non-native glucosyltransferase of claim 3 , wherein:

(i) the amino acid substitution at the position corresponding with amino acid residue Gln-588 is with a Leu residue,

(ii) the amino acid substitution at the position corresponding with amino acid residue Arg-741 is with a Ser residue, and/or

(iii) the amino acid substitution at the position corresponding with amino acid residue Arg-722 is with a His residue.

17. The non-native glucosyltransferase of claim 16 , comprising two or more amino acid substitutions at positions corresponding with amino acid residues Gln-588, Arg-741, or Arg-722 of SEQ ID NO:62.

18. The non-native glucosyltransferase of claim 6 , wherein the insoluble alpha-glucan has a DP w of at least 650.

19. The non-native glucosyltransferase of claim 7 , comprising a catalytic domain that is at least 95% identical to residues 55-960 of SEQ ID NO:4, residues 54-957 of SEQ ID NO:65, residues 55-960 of SEQ ID NO:30, residues 55-960 of SEQ ID NO:28, or residues 55-960 of SEQ ID NO:20.

20. The non-native glucosyltransferase of claim 19 , comprising a catalytic domain that is at least 95% identical to residues 55-960 of SEQ ID NO:4 or residues 54-957 of SEQ ID NO:65.

21. The non-native glucosyltransferase of claim 19 , comprising a catalytic domain that is at least 97% identical to residues 55-960 of SEQ ID NO:4, residues 54-957 of SEQ ID NO:65, residues 55-960 of SEQ ID NO:30, residues 55-960 of SEQ ID NO:28, or residues 55-960 of SEQ ID NO:20.

22. The non-native glucosyltransferase of claim 21 , comprising a catalytic domain that is at least 97% identical to residues 55-960 of SEQ ID NO:4 or residues 54-957 of SEQ ID NO:65.

23. The non-native glucosyltransferase of claim 8 , comprising an amino acid sequence that is at least 92% identical to SEQ ID NO:4, SEQ ID NO:65, SEQ ID NO:30, SEQ ID NO:28, or SEQ ID NO:20.

24. The non-native glucosyltransferase of claim 23 , comprising an amino acid sequence that is at least 95% identical to SEQ ID NO:4, SEQ ID NO:65, SEQ ID NO:30, SEQ ID NO:28, or SEQ ID NO:20.

25. The non-native glucosyltransferase of claim 24 , comprising an amino acid sequence that is at least 95% identical to SEQ ID NO:4 or SEQ ID NO:65.

26. The non-native glucosyltransferase of claim 24 , comprising an amino acid sequence that is at least 97% identical to SEQ ID NO:4, SEQ ID NO:65, SEQ ID NO:30, SEQ ID NO:28, or SEQ ID NO:20.

27. The non-native glucosyltransferase of claim 26 , comprising an amino acid sequence that is at least 97% identical to SEQ ID NO:4 or SEQ ID NO:65.

Assignments (8)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 28, 2020
From: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
To: NUTRITION & BIOSCIENCES USA 4, INC.
Reel/Frame 055028/0496 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 12, 2020
From: GENENCOR INTERNATIONAL B.V.
To: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
Reel/Frame 052927/0834 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 12, 2020
From: DANISCO US INC.
To: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
Reel/Frame 052921/0153 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ENTITY TYPE PREVIOUSLY RECORDED AT REEL: 049879 FRAME: 0043. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Sep 6, 2019
From: E. I. DU PONT DE NEMOURS AND COMPANY
To: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
Reel/Frame 050300/0408 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 26, 2019
From: E. I. DU PONT DE NEMOURS AND COMPANY
To: DUPONT INDUSTRIAL BIOSCIENCES USA, LLC
Reel/Frame 049879/0043 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 5, 2019
From: BOTT, RICHARD R.
To: DANISCO US INC.
Reel/Frame 048236/0920 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 31, 2019
From: ALKAN, VELI; KRALJ, SLAVKO
To: GENENCOR INTERNATIONAL B.V.
Reel/Frame 048204/0847 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 30, 2019
From: LI, YOUGEN; SEMKE, ELLEN D.; PAYNE, MARK S.; PARKER, JARED B.; HENNESSEY, SUSAN MARIE
To: E. I. DU PONT DE NEMOURS AND COMPANY
Reel/Frame 048190/0110 →
Cited By (1)
US 12,618,051