IP Library Granted Patent US 10,787,519
Granted Patent B2
US 10,787,519 · App. 16/128,428 · Granted Sep 29, 2020

Nucleic acid-polypeptide compositions and uses thereof

Inventors: Andrew John Geall (Carlsbad, CA); Venkata Ramana Doppalapudi (San Diego, CA); David Sai-Ho Chu (La Jolla, CA); Michael Caramian Cochran (La Jolla, CA); Rachel Elizabeth Johns (San Diego, CA); Palani Balu (Cupertino, CA); Rob Burke (Encinitas, CA); Beatrice Diana Darimont (San Diego, CA)
Assignee: AVIDITY BIOSCIENCES, INC.
C07K16/2863A61K31/7088A61K31/713A61K47/60A61K47/6807A61K47/6851A61K47/6889A61K48/005A61K48/0033A61K48/0075A61P35/00A61P35/02C07K16/2851C07K16/30C07K16/3061C12N15/113C12N15/1135C12N15/1138C12N15/88A61K2039/505C07K2317/21C07K2317/24C07K2317/55C07K2317/569C07K2317/622C12N2310/14C12N2310/315C12N2310/321C12N2310/3231C12N2310/332C12N2310/3513C12N2310/3515C12N2320/32
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Quick Facts
Patent No.
US 10,787,519
App. No.
16/128,428
Granted
Sep 29, 2020
Kind
B2
Abstract

Disclosed herein are compositions and pharmaceutical formulations that comprise a binding moiety conjugated to a polynucleic acid molecule and a polymer. Also described herein include methods for treating a cancer which utilize a composition or a pharmaceutical formulation comprising a binding moiety conjugated to a polynucleic acid molecule and a polymer.

Claims (28)

1. A molecule of Formula (I):

A-X—B—Y—C   Formula I

wherein,

A is an antibody or its binding fragment thereof;

B consists of a double-stranded siRNA consisting of a passenger strand and a guide strand;

C consists of a polymer; and

X and Y are each independently a linker selected from the group consisting of a heterobifunctional linker, a homobifunctional linker, a maleimide group, a dipeptide moiety, a benzoic acid group or derivatives thereof, a C 1 -C 6 alkyl group, and a combination thereof;

wherein:

the double-stranded siRNA comprises at least one 2′ modified nucleotide, at least one modified internucleotide linkage, or at least one inverted abasic moiety;

A and C are attached in the same strand, but not attached to B at the same terminus;

A-X and Y—C are conjugated to the passenger strand; and

the molecule has a higher target tumor tissue uptake or a higher plasma stability compared to an antibody-polymer-nucleic acid configuration or an antibody-nucleic acid configuration.

2. The molecule of claim 1 , wherein the guide strand hybridizes to a target region of a gene selected from the group consisting of KRAS, EGFR, AR, CTNNB1, PIK3CA, PIK3CB, MYC, and HPRT1.

3. The molecule of claim 1 , wherein the at least one 2′ modified nucleotide comprises 2′-O-methyl, 2′-O-methoxyethyl (2′-O-MOE), 2′-O-aminopropyl, 2′-deoxy, 2′-deoxy-2′-fluoro, 2′-O-aminopropyl (2′-O-AP), 2′-O-dimethylaminoethyl (2′-O-DMAOE), 2′-O-dimethylaminopropyl (2′-O-DMAP), 2′-O-dimethylaminoethyloxyethyl (2′-O-DMAEOE), or 2′-O—N-methylacetamido (2′-O-NMA) modified nucleotide.

4. The molecule of claim 1 , wherein the at least one 2′ modified nucleotide comprises locked nucleic acid (LNA) or ethylene nucleic acid (ENA).

5. The molecule of claim 1 , wherein the at least one modified internucleotide linkage comprises a phosphorothioate linkage or a phosphorodithioate linkage.

6. The molecule of claim 1 , wherein the at least one inverted abasic moiety is at at least one terminus.

7. The molecule of claim 1 , wherein the guide strand comprises a sequence having at least 80% sequence identity to SEQ ID NOs: 16-75, 452-1955, 1956-1962, 1967-2002, 2013-2032, 2082-2109, or 2117.

8. The molecule of claim 1 , wherein the antibody or binding fragment thereof comprises a humanized antibody or binding fragment thereof, chimeric antibody or binding fragment thereof, monoclonal antibody or binding fragment thereof, monovalent Fab′, divalent Fab2, single-chain variable fragment (scFv), diabody, minibody, nanobody, single-domain antibody (sdAb), or camelid antibody or binding fragment thereof.

9. The molecule of claim 1 , wherein the antibody or binding fragment thereof is an anti-transferrin receptor antibody or binding fragment thereof.

10. The molecule of claim 1 , wherein C is polyethylene glycol.

11. The molecule of claim 10 , wherein C has a molecular weight from about 1000 Da to about 5000 Da.

12. The molecule of claim 10 , wherein C has a molecular weight of about 1000 Da, 2000 Da, or 5000 Da.

13. The molecule of claim 1 , wherein A-X is conjugated to the 5′ end of the passenger strand and Y—C is conjugated to the 3′ end of the passenger strand.

14. The molecule of claim 1 , wherein Y—C is conjugated to the 5′ end of the passenger strand and A-X is conjugated to the 3′ end of the passenger strand.

15. A pharmaceutical composition comprising a molecule of claim 1 and a pharmaceutically acceptable excipient.

16. The pharmaceutical composition of claim 15 , wherein the pharmaceutical composition is formulated for the treatment of a solid tumor.

17. The pharmaceutical composition of claim 15 , wherein the pharmaceutical composition is formulated for the treatment of breast cancer, lung cancer, ovarian cancer, prostate cancer, or skin cancer.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 26, 2026
From: AVIDITY BIOSCIENCES, INC.
To: ATRIUM THERAPEUTICS, INC.
Reel/Frame 074189/0439 →
CORRECTIVE ASSIGNMENT TO CORRECT THE RECEIVING PARTY PREVIOUSLY RECORDED AT REEL: 050018 FRAME: 0456. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Sep 12, 2019
From: AVIDITY BIOSCIENCES LLC
To: AVIDITY BIOSCIENCES, INC.
Reel/Frame 050371/0483 →
CHANGE OF NAME Recorded Aug 9, 2019
From: AVIDITY BIOSCIENCES LLC
To: AVIDITY BIOSCIENCES LLC; AVIDITY BIOSCIENCES, INC.
Reel/Frame 050018/0456 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 2, 2018
From: GEALL, ANDREW JOHN; DOPPALAPUDI, VENKATA RAMANA; CHU, DAVID SAI-HO; COCHRAN, MICHAEL CARAMIAN; JOHNS, RACHEL ELIZABETH; BALU, PALANI; BURKE, ROB; DARIMONT, BEATRICE DIANA
To: AVIDITY BIOSCIENCES LLC
Reel/Frame 047037/0787 →
Continuity (3)
Continuation 15476849 · Mar 31, 2017
Provisional Application 62316919 · Apr 1, 2016
Related Publication 20190062437A1 · Feb 28, 2019
Cited By (4)
US 12,234,290 US 12,263,224 US 12,351,637 US 12,509,835