Stable and soluble antibodies inhibiting TNFα
The present invention relates to particularly stable and soluble scFv antibodies and Fab fragments specific for TNF, which comprise specific light chain and heavy chain sequences that are optimized for stability, solubility, in vitro and in vivo binding of TNF, and low immunogenicity. The antibodies are designed for the diagnosis and/or treatment of TNF-mediated disorders. The nucleic acids, vectors and host cells for expression of the recombinant antibodies of the invention, methods for isolating them and the use of the antibodies in medicine are also described.
1. An immunobinder comprising:
a human heavy chain variable framework sequence and CDR H1, CDR H2 and CDR H3 sequences, wherein the human heavy chain variable region framework has at least 90% identity to SEQ ID NO:2; and
a human light chain variable framework sequence and CDR L1, CDR L2 and CDR L3 sequences, wherein the human light chain variable region framework sequence has at least 85% identity to a sequence of SEQ ID NO:1, wherein
(a) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 6, SEQ ID NO: 7 and SEQ ID NO: 8;
(b) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 12, SEQ ID NO: 13 and SEQ ID NO: 14;
(c) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 18, SEQ ID NO: 19 and SEQ ID NO: 20;
(d) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 24, SEQ ID NO: 25 and SEQ ID NO: 26;
(e) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 30, SEQ ID NO: 31 and SEQ ID NO: 32;
(f) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 39, SEQ ID NO: 40, SEQ ID NO: 41, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 42, SEQ ID NO: 43 and SEQ ID NO: 44; or
(g) the CDR H1, CDR H2, and CDR H3 sequences comprise sequences of SEQ ID NO: 45, SEQ ID NO: 46, SEQ ID NO: 47, and the CDR L1, CDR L2, and CDR L3 sequences comprise sequences of SEQ ID NO: 48, SEQ ID NO: 49 and SEQ ID NO: 50,
and wherein the immunobinder specifically binds human TNFα.
2. The immunobinder of claim 1 , wherein the human heavy chain variable region framework comprises a sequence of SEQ ID NO: 2, SEQ ID NO: 89, or SEQ ID NO: 90, and the human light chain variable region framework sequence comprises a sequence of SEQ ID NO: 1 or SEQ ID NO: 91.
3. The immunobinder of claim 2 , comprising one or more substitutions in the human heavy chain variable region framework at a position selected from the group consisting of positions H24, H25, H56, H82, H84, H89 and H108; and a substitution in the human light chain variable region framework at position L87 according to the AHo numbering system.
4. The immunobinder of claim 3 , wherein the substitution is selected from the group consisting of threonine (T) at position H24, valine (V) at position H25, glycine (G) or alanine (A) at position H56, lysine (K) at position H82, threonine (T) at position H84, valine (V) at position H89 and arginine (R) at position H108 and threonine (T) at position L87 according to the AHo numbering system.
5. The immunobinder of claim 2 , wherein the immunobinder comprises a solubility enhancing substitution in at least one of heavy chain variable region framework amino acid positions 12, 103 and 144 according to the AHo numbering system.
6. The immunobinder of claim 5 , wherein the solubility enhancing substitution is selected from the group consisting of: (a) Serine (S) at position 12; (b) Threonine (T) at position 103; and (c) Threonine (T) at position 144.
7. The immunobinder of claim 1 , comprising:
(a) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:51, SEQ ID NO:53 and SEQ ID NO: 55, and a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:52, SEQ ID NO:54, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO:58 and SEQ ID NO: 59, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences;
(b) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:60 and SEQ ID NO:62, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:61 and SEQ ID NO:63, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences;
(c) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:64 and SEQ ID NO:66, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:65 and SEQ ID NO:67, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences;
(d) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:68 and SEQ ID NO:70, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:69 and SEQ ID NO:71, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences;
(e) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:73 and SEQ ID NO:75, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:74 and SEQ ID NO:76, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences;
(f) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:81 and SEQ ID NO:83, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:82 and SEQ ID NO:84, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences; or
(g) a heavy chain variable region (VH) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:85 and SEQ ID NO:87, and/or a light chain variable region (VL) having at least 90% sequence identity to a sequence selected from the group consisting of SEQ ID NO:86 and SEQ ID NO:88, wherein the VH and VL sequences have the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences.
8. The immunobinder of claim 1 , having at least 90% sequence identity to a sequence of any of SEQ ID NO: 94 to SEQ ID NO: 113 and SEQ ID NO: 116 to SEQ ID NO: 121, wherein the immunobinder has the same set of CDR sequences as set forth in claim 1 but amino acid variation in the framework sequences.
9. The immunobinder of claim 1 , which is an antibody.
10. The immunobinder of claim 9 , which is an scFv, Fab fragment, a Fab′ fragment, a F(ab′) 2 fragment, a Fd fragment, or a Fv fragment.
11. A composition comprising the immunobinder of claim 1 , and a pharmaceutically acceptable carrier.
12. The composition of claim 11 , formulated for topical, oral, nasal, rectal or parental administration.
13. A pharmaceutical formulation comprising the immunobinder of claim 1 or antigen-binding fragment thereof at a concentration of about 0.1 mg/ml to about 50 mg/ml.
14. The pharmaceutical formulation of claim 13 , wherein the antigen-binding fragment is a Fab, a F(ab′) 2 or a Fab′.
15. The pharmaceutical formulation of claim 13 , wherein the antigen-binding fragment is an scFv.
16. The pharmaceutical formulation of claim 13 , wherein the immunobinder or antigen-binding fragment thereof is at a concentration of 0.5 mg/ml to about 40 mg/ml.
17. The pharmaceutical formulation of claim 16 , wherein the immunobinder or antigen-binding fragment thereof is at a concentration of 10 mg/ml to about 20 mg/ml.