IP Library Granted Patent US 10,555,534
Granted Patent B2
US 10,555,534 · App. 16/145,628 · Granted Feb 11, 2020

Fusion proteins and methods for stimulating plant growth, protecting plants from pathogens, and immobilizing

Inventors: Brian Thompson (Creve Coeur, MO); Katie Thompson (Creve Coeur, MO)
Assignee: Spogen Biotech Inc.
A01N63/00A01N37/46A01N37/48A01N63/02C07K14/32C12N9/0095C12N9/16C12N9/20C12N9/2402C12N9/2437C12N9/48C12Y118/06001C12Y301/01003C12Y302/01004C12Y304/00C07K2319/035C12Y301/03008
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Quick Facts
Patent No.
US 10,555,534
App. No.
16/145,628
Granted
Feb 11, 2020
Kind
B2
Abstract

The present invention is generally directed to fusion proteins containing a targeting sequence that targets the fusion protein to the exosporium of a Bacillus cereus family member. The invention also relates to recombinant Bacillus cereus family members expressing such fusion proteins, formulations containing the recombinant Bacillus cereus family members expressing the fusion proteins. Methods for stimulating plant growth and for protecting plants from pathogens by applying the recombinant Bacillus cereus family members or the formulations to plants or a plant growth medium are also described. The invention also relates to methods for immobilizing spores of a recombinant Bacillus cereus family member expressing a fusion protein on plant roots.

Claims (92)

1. A recombinant Bacillus cereus family member that expresses a fusion protein, wherein the fusion protein comprises:

a targeting sequence or exosporium protein that is capable of targeting the fusion protein to the exosporium of the recombinant Bacillus cereus family member; and

at least one plant growth stimulating protein or peptide, wherein the plant growth stimulating protein or peptide comprises a chitosanase, a protease, a phosphatase, a nitrogenase, a nuclease, a glucosidase, a flagellin protein, or a flagellin peptide.

2. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 43% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 54%.

3. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 50% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 63%.

4. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 62% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 72%.

5. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises a targeting sequence comprising an amino acid sequence having at least 81% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 90%.

6. The recombinant Bacillus cereus family member of claim 1 , wherein the targeting sequence consists of: (a) a 16 amino acid sequence having at least 43% identity with amino acids 20-35 of SEQ ID NO: 1, wherein the identity with amino acids 25-35 is at least 54%; (b) amino acids 1-35 of SEQ ID NO: 1; (c) amino acids 20-35 of SEQ ID NO: 1; or (d) SEQ ID NO: 1.

7. The recombinant Bacillus cereus family member of claim 1 , wherein the fusion protein comprises:

(a) a targeting sequence comprising amino acids 1-35 of SEQ ID NO: 1;

(b) a targeting sequence comprising amino acids 20-35 of SEQ ID NO: 1;

(c) a targeting sequence comprising SEQ ID NO: 1;

(d) an exosporium protein comprising SEQ ID NO: 2;

(e) a targeting sequence comprising amino acids 1-27 of SEQ ID NO: 3;

(f) a targeting sequence comprising amino acids 12-27 of SEQ ID NO: 3;

(g) a targeting sequence comprising SEQ ID NO: 3;

(h) an exosporium protein comprising SEQ ID NO: 4;

(i) a targeting sequence comprising amino acids 1-38 of SEQ ID NO: 5;

(j) a targeting sequence comprising amino acids 23-38 of SEQ ID NO: 5;

(k) a targeting sequence comprising SEQ ID NO: 5;

(l) an exosporium protein comprising SEQ ID NO: 6;

(m) a targeting sequence comprising amino acids 1-28 of SEQ ID NO: 7;

(n) a targeting sequence comprising amino acids 13-28 of SEQ ID NO: 7;

(o) a targeting sequence comprising SEQ ID NO: 7;

(p) an exosporium protein comprising SEQ ID NO: 8;

(q) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 9;

(r) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 9;

(s) a targeting sequence comprising SEQ ID NO: 9;

(t) an exosporium protein comprising SEQ ID NO: 10;

(u) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 11;

(v) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 11;

(w) a targeting sequence comprising SEQ ID NO: 11;

(x) an exosporium protein comprising SEQ ID NO: 12;

(y) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 13;

(z) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 13;

(aa) a targeting sequence comprising amino SEQ ID NO: 13;

(ab) an exosporium protein comprising SEQ ID NO: 14;

(ac) a targeting sequence comprising amino acids 1-43 of SEQ ID NO: 15;

(ad) a targeting sequence comprising amino acids 28-43 of SEQ ID NO: 15;

(ae) a targeting sequence comprising amino SEQ ID NO: 15;

(af) an exosporium protein comprising SEQ ID NO: 16;

(ag) a targeting sequence comprising amino acids 1-27 of SEQ ID NO: 17;

(ah) a targeting sequence comprising amino acids 12-27 of SEQ ID NO: 17;

(ai) a targeting sequence comprising amino SEQ ID NO: 17;

(aj) an exosporium protein comprising SEQ ID NO: 18;

(ak) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 19;

(al) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 19;

(am) a targeting sequence comprising amino SEQ ID NO: 19;

(an) an exosporium protein comprising SEQ ID NO: 20;

(ao) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 21;

(ap) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 21;

aq) a targeting sequence comprising amino SEQ ID NO: 21;

(ar) an exosporium protein comprising SEQ ID NO: 22;

(as) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 23;

(at) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 23;

(au) a targeting sequence comprising amino SEQ ID NO: 23;

(av) an exosporium protein comprising SEQ ID NO: 24;

(aw) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 25;

(ax) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 25;

(ay) a targeting sequence comprising amino SEQ ID NO: 25;

(az) an exosporium protein comprising SEQ ID NO: 26;

(ba) a targeting sequence comprising amino acids 1-30 of SEQ ID NO: 27;

(bb) a targeting sequence comprising amino acids 15-30 of SEQ ID NO: 27;

(bc) a targeting sequence comprising amino SEQ ID NO: 27;

(bd) an exosporium protein comprising SEQ ID NO: 28;

(be) a targeting sequence comprising amino acids 1-33 of SEQ ID NO: 29;

(bf) a targeting sequence comprising amino acids 18-33 of SEQ ID NO: 29;

(bg) a targeting sequence comprising amino SEQ ID NO: 29;

(bh) an exosporium protein comprising SEQ ID NO: 30;

(bi) a targeting sequence comprising amino acids 1-24 of SEQ ID NO: 31;

(bj) a targeting sequence comprising amino acids 9-24 of SEQ ID NO: 31;

(bk) a targeting sequence comprising amino SEQ ID NO: 31;

(bl) an exosporium protein comprising SEQ ID NO: 32;

(bm) a targeting sequence comprising amino acids 1-15 of SEQ ID NO: 33;

(bn) a targeting sequence comprising amino SEQ ID NO: 33;

(bo) an exosporium protein comprising SEQ ID NO: 34;

(bp) a targeting sequence comprising amino acids 1-16 of SEQ ID NO: 35;

(bq) a targeting sequence comprising amino SEQ ID NO: 35; or

(br) an exosporium protein comprising SEQ ID NO: 36.

8. The recombinant Bacillus cereus family member of claim 1 , wherein the targeting sequence comprises the amino acid sequence GXT at its carboxy terminus, wherein X is any amino acid.

9. The recombinant Bacillus cereus family member of claim 1 , wherein the plant growth stimulating protein or peptide comprises a protease selected from the group consisting of subtilisin, an acid protease, an alkaline protease, a proteinase, a peptidase, an endopeptidase, an exopeptidase, a thermolysin, a papain, a pepsin, a trypsin, a pronase, a carboxylase, a serine protease, a glutamic protease, an aspartate protease, a cysteine protease, a threonine protease, or a metalloprotease.

10. The recombinant Bacillus cereus family member of claim 1 , wherein the plant growth stimulating protein or peptide comprises a phosphatase selected from the group consisting of a phosphoric monoester hydrolase, a phosphomonoesterase, a phosphoric diester hydrolase, a phosphodiesterase, a triphosphoric monoester hydrolase, a phosphoryl anhydride hydrolase, a pyrophosphatase, a phytase, a trimetaphosphatase, or a triphosphatase.

11. The recombinant Bacillus cereus family member of claim 1 , wherein the plant growth stimulating protein or peptide comprises a flagellin protein or a flagellin peptide.

12. The recombinant Bacillus cereus family member of claim 1 , wherein the plant growth stimulating protein or peptide comprises a chitosanase.

13. The recombinant Bacillus cereus family member of claim 1 , wherein the recombinant Bacillus cereus family member comprises Bacillus anthracis, Bacillus cereus, Bacillus thuringiensis, Bacillus mycoides, Bacillus pseudomycoides, Bacillus weihenstephensis , or a combination thereof.

14. The recombinant Bacillus cereus family member of claim 13 , wherein the recombinant Bacillus cereus family member comprises Bacillus thuringiensis.

15. The recombinant Bacillus cereus family member of claim 1 , wherein the plant growth stimulating protein or peptide is physically attached to the exosporium of the recombinant Bacillus cereus family member.

16. The recombinant Bacillus cereus family member of claim 1 , wherein the recombinant Bacillus cereus family member is inactivated.

17. A formulation comprising the recombinant Bacillus cereus family member of claim 1 and an agriculturally acceptable carrier.

18. A method for stimulating plant growth comprising:

introducing the recombinant Bacillus cereus family member of claim 1 or a formulation comprising the recombinant Bacillus cereus family member of claim 1 and an agriculturally acceptable carrier into a plant growth medium; or

applying the recombinant Bacillus cereus family member of claim 1 or a formulation comprising the recombinant Bacillus cereus family member of claim 1 , and an agriculturally acceptable carrier to foliage of a plant, a plant seed, or an area surrounding a plant.

Assignments (3)
SECURITY INTEREST Recorded Jan 23, 2023
From: SPOGEN BIOTECH INC; ELEMENTAL ENZYMES AG AND TURF, LLC; THOMPSON, BRIAN M; THOMPSON, KATIE C
To: GENISYS CREDIT UNION
Reel/Frame 062458/0476 →
SECURITY INTEREST Recorded Jan 23, 2023
From: SPOGEN BIOTECH INC; ELEMENTAL ENZYMES AG AND TURF, LLC; THOMPSON, BRIAN M; THOMPSON, KATIE C
To: GENISYS CREDIT UNION
Reel/Frame 062458/0544 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 6, 2019
From: THOMPSON, BRIAN; THOMPSON, KATIE
To: SPOGEN BIOTECH INC.
Reel/Frame 048249/0993 →
Continuity (4)
Division 15414050 · Jan 24, 2017
Division 14213525 · Mar 14, 2014
Provisional Application 61799262 · Mar 15, 2013
Related Publication 20190116801A1 · Apr 25, 2019
Cited By (2)
US 12,391,729 US 12,527,323