IP Library Granted Patent US 10,604,514
Granted Patent B2
US 10,604,514 · App. 16/164,447 · Granted Mar 31, 2020

6-(5-membered heteroaryl)isoquinolin-3-yl carboxamides and preparation and use thereof

Inventors: Sunil Kumar KC (San Diego, CA); Gopi Kumar Mittapalli (San Diego, CA); Chandramouli Chiruta (San Diego, CA); Brian Joseph Hofilena (San Diego, CA); Chi Ching Mak (San Diego, CA); Brian Walter Eastman (San Diego, CA); Venkataiah Bollu (San Diego, CA)
Assignee: Samumed, LLC
C07D413/04A61P35/00C07D401/04C07D401/14C07D413/14C07D417/04C07D417/14C07D451/04C07D487/04C07D487/08C07B2200/05
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Quick Facts
Patent No.
US 10,604,514
App. No.
16/164,447
Granted
Mar 31, 2020
Kind
B2
Abstract

Isoquinoline compounds for treating various diseases and pathologies are disclosed. More particularly, the present disclosure concerns the use of an isoquinoline compound or analogs thereof, in the treatment of disorders characterized by the activation of Wnt pathway signaling (e.g., cancer, abnormal cellular proliferation, angiogenesis, Alzheimer's disease, lung disease, inflammation, auto-immune diseases and osteoarthritis), the modulation of cellular events mediated by Wnt pathway signaling, as well as neurological conditions/disorders/diseases linked to overexpression of DYRK1A.

Claims (139)

1. A compound, or a pharmaceutically acceptable salt thereof, of Formula I:

wherein:

R 1 , R 2 , R 4 , and R 5 are independently selected from the group consisting of H and halide;

R 3 is a 5-membered heteroaryl substituted with 1-4 R 26 ;

with the proviso that R 3 is not

R 6 is selected from the group consisting of —CH 2 phenyl substituted with 1-5 R 41 , —CH═CHphenyl optionally substituted with halide, —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-5 R 27 , -carbocyclyl substituted with 1-5 R 28 , and

wherein —(C 1-4 alkylene) is, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl); wherein n is 1-4, m is 0-2 and each Z is independently selected from the group consisting of CR 32 and N;

each R 26 is independently unsubstituted —(C 1-5 alkyl);

each R 27 is independently selected from the group consisting of halide and —N(R 43 )(R 44 ), with the proviso that if one or more R 27 is halide, at least one R 27 is —N(R 43 )(R 44 );

each R 28 is independently —N(R 33 )(R 34 );

each R 32 is independently selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

R 33 is attached to the nitrogen and selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

R 34 is attached to the nitrogen and is selected from the group consisting of unsubstituted —(C 1-5 haloalkyl), —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-10 R 38 , —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 39 , —(C 1-4 alkylene)OR 35 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each R 35 is independently selected from the group consisting of H and unsubstituted —(C 1-5 alkyl);

each R 38 is independently selected from the group consisting of halide and unsubstituted —(C 1-5 alkyl);

each R 39 is independently selected from the group consisting of halide, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), —CN, and —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 40 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each R 40 is independently selected from the group consisting of halide, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), and —CN;

each R 41 is halide;

each R 43 is attached to the nitrogen and selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

each R 44 is attached to the nitrogen and is selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-10 R 38 , —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 39 , and —(C 1-4 alkylene)OR 35 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each p is independently 0 or 1; and

wherein one or more H are optionally replaced by D.

2. A compound, or a pharmaceutically acceptable salt thereof, of Formula I:

wherein:

R 1 , R 2 , R 4 , and R 5 are independently selected from the group consisting of H and halide;

R 3 is selected from the group consisting of:

wherein each of R 7 -R 25 is, independently, a substituent or a single bond connecting R 3 to the isoquinoline ring; wherein only one of R 7 -R 10 (when present) is a bond, only one of R 11 -R 14 (when present) is a bond, only one of R 15 -R 17 (when present) is a bond, only one of R 18 -R 20 (when present) is a bond, only one of R 21 -R 23 (when present) is a bond, and only one of R 24 -R 25 (when present) is a bond; for purposes of clarification, any one of the nitrogen atoms attached to R 7 , R 11 , R 15 , or R 18 can serve as the point of attachment of R 3 to the isoquinoline ring; likewise, any one of the carbon atoms attached to R 8 , R 9 , R 10 , R 12 , R 13 , R 14 , R 16 , R 17 , R 19 , R 20 , R 21 , R 22 , R 23 , R 24 , and R 25 can serve as the point of attachment of R 3 to the isoquinoline ring; so that:

when the nitrogen atom to which R 7 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 7 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 8 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 8 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 9 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 9 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 10 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 10 is a single bond connecting R 3 to the isoquinoline ring;

when the nitrogen atom to which R 11 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 11 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 12 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 12 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 13 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 13 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 14 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 14 is a single bond connecting R 3 to the isoquinoline ring;

when the nitrogen atom to which R 15 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 15 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 16 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 16 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 17 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 17 is a single bond connecting R 3 to the isoquinoline ring;

when the nitrogen atom to which R 18 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 18 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 19 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 19 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 26 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 20 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 21 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 21 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 22 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 22 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 23 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 23 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 24 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 24 is a single bond connecting R 3 to the isoquinoline ring;

when the carbon atom to which R 25 is attached serves as the point of attachment of R 3 to the isoquinoline ring, then R 25 is a single bond connecting R 3 to the isoquinoline ring;

R 6 is selected from the group consisting of —CH 2 phenyl substituted with 1-5 R 41 , —CH═CHphenyl optionally substituted with halide, —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-5 R 27 , -carbocyclyl substituted with 1-5 R 28 , and

wherein —(C 1-4 alkylene) is, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl); wherein n is 1-4, m is 0-2 and each Z is independently selected from the group consisting of CR 32 and N;

R 7 is selected from the group consisting of a single bond and unsubstituted —(C 1-5 alkyl);

R 8 , R 9 , and R 10 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 11 is selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 12 , R 13 , and R 14 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 15 is selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 16 and R 17 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 18 is selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 19 and R 20 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 21 , R 22 , and R 23 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

R 24 and R 25 are independently selected from the group consisting of a single bond, H, and unsubstituted —(C 1-5 alkyl);

each R 27 is independently selected from the group consisting of halide, and —N(R 43 )(R 44 ), with the proviso that if one or more R 27 is halide, at least one R 27 is —N(R 43 )(R 44 );

each R 28 is independently —N(R 33 )(R 34 );

each R 32 is independently selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

R 33 is attached to the nitrogen and selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

R 34 is attached to the nitrogen and is selected from the group consisting of unsubstituted —(C 1-5 haloalkyl), —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-10 R 38 , —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 39 , —(C 1-4 alkylene)OR 35 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or unsubstituted —(C 1-3 alkyl);

each R 35 is independently selected from the group consisting of H and unsubstituted —(C 1-5 alkyl);

each R 38 is independently selected from the group consisting of halide and unsubstituted —(C 1-5 alkyl);

each R 39 is independently selected from the group consisting of halide, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), —CN, and —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 40 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each R 40 is independently selected from the group consisting of halide, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), and —CN;

each R 41 is halide;

each R 43 is attached to the nitrogen and selected from the group consisting of H, unsubstituted -(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), and unsubstituted —(C 1-5 haloalkyl);

each R 44 is attached to the nitrogen and is selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), unsubstituted —(C 2-5 alkynyl), unsubstituted —(C 1-5 haloalkyl), —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-10 R 38 , —(C 1-4 alkylene) p carbocyclyl optionally substituted with 1-12 R 39 , and —(C 1-4 alkylene)OR 35 ; wherein each —(C 1-4 alkylene) is, independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each X is 0 or S;

each p is independently 0 or 1; and

wherein one or more H are optionally replaced by D.

3. The compound of claim 1 , wherein the compound of Formula I is selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

4. A compound, or a pharmaceutically acceptable salt thereof, of Formula I:

wherein:

R 1 , R 2 , R 4 , and R 5 are independently selected from the group consisting of H and halide;

R 3 is a 5-membered heteroaryl substituted with 1-4 R 26 ;

with the proviso that R 3 is not

R 6 is selected from the group consisting of —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-5 R 27 , -carbocyclyl optionally substituted with 1-5 R 28 , and —N(R 30 )(R 31 ); wherein —(C 1-4 alkylene) is, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each R 26 is independently unsubstituted —(C 1-5 alkyl);

each R 27 is independently selected from the group consisting of halide, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 1-9 haloalkyl), —OR 35 , and —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-5 R 36 ; wherein —(C 1-4 alkylene) is, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

each R 28 is independently selected from the group consisting of —N(R 33 ) 2 , —(C 1-4 alkylene)OR 35 , —C(═O)(R 37 ), and —(C 1-4 alkylene) p heterocyclyl optionally substituted with 1-5 R 36 ; wherein each —(C 1-4 alkylene) is independently, optionally substituted with one or more halides or one or more unsubstituted —(C 1-3 alkyl);

R 30 is attached to the nitrogen and is selected from the group consisting of H and unsubstituted —(C 1-5 alkyl);

R 31 is attached to the nitrogen and is heterocyclyl optionally substituted with 1-5 R 38 ;

R 33 is attached to the nitrogen and selected from the group consisting of H, unsubstituted —(C 1-5 alkyl), unsubstituted —(C 2-5 alkenyl), and unsubstituted —(C 2-5 alkynyl);

each R 35 is independently selected from the group consisting of H and unsubstituted —(C 1-5 alkyl);

each R 36 is selected from the group consisting of unsubstituted —(C 1-5 alkyl) and unsubstituted —(C 1-5 haloalkyl);

R 37 is -heterocyclyl optionally substituted with one or more halides or one or more unsubstituted —(C 1-5 alkyl);

each R 38 is independently selected from the group consisting of halide and unsubstituted —(C 1-5 alkyl);

each p is independently 0 or 1; and

wherein one or more H are optionally replaced by D.

5. The compound of claim 4 , wherein the compound of Formula I is selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

6. A compound, or a pharmaceutically acceptable salt thereof, of Formula I:

wherein:

R 1 , R 2 , R 4 , and R 5 are independently selected from the group consisting of H and halide;

R 3 is a 5-membered heteroaryl optionally substituted with 1-4 R 26 ;

R 6 is a selected from the group consisting of -phenyl substituted with 1-5 R 42 and 6-membered heteroaryl optionally substituted with 1-6 R 29 ;

each R 26 is independently unsubstituted —(C 1-5 alkyl);

each R 29 is independently selected from the group consisting of unsubstituted —(C 1-5 alkyl) and heterocyclyl optionally substituted with 1-5 R 36 ;

each R 36 is independently unsubstituted (C 1-5 alkyl);

each R 42 is independently selected from the group consisting of halide, —OMe, and unsubstituted —(C 1-5 alkyl); and

wherein one or more H are optionally replaced by D.

7. The compound of claim 6 , wherein the compound of Formula I is selected from the group consisting of:

and or a pharmaceutically acceptable salt thereof.

8. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

9. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 2 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

10. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 4 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

11. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 6 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

12. The compound of claim 2 , wherein R 3 is selected from the group consisting of:

and X is O or S.

13. The compound of claim 12 , wherein R 3 is selected from the group consisting of:

wherein R 7 is —(C 1-2 alkyl), and R 11 , R 14 , R 23 , and R 24 are independently selected from the group consisting of H and —(C 1-2 alkyl).

14. The compound of claim 13 , wherein R 6 is a -heterocyclyl optionally substituted with 1-2 R 27 .

15. The compound of claim 13 , wherein R 6 is a —CH 2 heterocyclyl optionally substituted with 1-2 R 27 .

16. The compound of claim 14 , wherein R 6 is either a piperidinyl or a pyrrolidinyl both optionally substituted with 1-2 R 27 .

17. The compound of claim 13 , wherein R 6 is selected from the group consisting of

and q is 1.

18. The compound of claim 16 , wherein R 6 is a piperidinyl substituted with one —N(R 43 )(R 44 ).

19. The compound of claim 17 , wherein R 43 is H or Me and R 44 is —C 1-4 haloalkyl.

20. The compound of claim 13 , wherein R 6 is —carbocyclyl substituted with 1-2 R 28 .

21. The compound of claim 4 , wherein R 3 is selected from the group consisting of a pyrazolyl substituted with one —(C 12 alkyl), imidazolyl substituted with 1-2 —(C 12 alkyl), oxazolyl substituted with one —(C 1-2 alkyl), and thiadiazolyl substituted with one —(C 1-2 alkyl).

22. The compound of claim 21 , wherein R 6 is -heterocyclyl optionally substituted with 1-2 R 27 .

23. The compound of claim 22 , wherein R 6 is selected from the group consisting of

and q is 1.

24. A method of inhibiting one or more proteins in the Wnt pathway, the method comprising contacting a cell with an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, or a pharmaceutical composition.

25. A method of inhibiting one or more proteins in the Wnt pathway, the method comprising contacting a cell with an effective amount of a compound of claim 2 , or a pharmaceutically acceptable salt, or a pharmaceutical composition.

26. A method of inhibiting one or more proteins in the Wnt pathway, the method comprising contacting a cell with an effective amount of a compound of claim 4 , or a pharmaceutically acceptable salt, or a pharmaceutical composition.

27. A method of inhibiting one or more proteins in the Wnt pathway, the method comprising contacting a cell with an effective amount of a compound of claim 6 , or a pharmaceutically acceptable salt, or a pharmaceutical composition.

28. The method of claim 24 , wherein the cell is a human cancerous cell.

29. The method of claim 25 , wherein the cell is a human cancerous cell.

30. The method of claim 26 , wherein the cell is a human cancerous cell.

31. The method of claim 27 , wherein the cell is a human cancerous cell.

32. The method of claim 24 , wherein the protein is a kinase and the kinase is selected from the group consisting of DYRK or GSK families of kinases.

33. The method of claim 25 , wherein the protein is a kinase and the kinase is selected from the group consisting of DYRK or GSK families of kinases.

34. The method of claim 26 , wherein the protein is a kinase and the kinase is selected from the group consisting of DYRK or GSK families of kinases.

35. The method of claim 27 , wherein the protein is a kinase and the kinase is selected from the group consisting of DYRK or GSK families of kinases.

Assignments (4)
RELEASE OF SECURITY INTEREST Recorded Mar 12, 2026
From: TMF GROUP NEW YORK, LLC, NOT INDIVIDUALLY BUT SOLELY AS COLLATERAL AGENT
To: BIOSPLICE THERAPEUTICS, INC.
Reel/Frame 075109/0434 →
SECURITY INTEREST Recorded Sep 14, 2022
From: BIOSPLICE THERAPEUTICS, INC.
To: VICKERS VENTURE FUND VI PTE. LTD.; VICKERS VENTURE FUND VI (PLAN) PTE. LTD.; VICKERS-SPLICE CO-INVESTMENT LLC; MED-PATHWAYS II LIMITED
Reel/Frame 061433/0786 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 23, 2021
From: SAMUMED, LLC
To: BIOSPLICE THERAPEUTICS, INC.
Reel/Frame 055694/0001 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 4, 2019
From: KC, SUNIL KUMAR; MITTAPALLI, GOPI KUMAR; CHIRUTA, CHANDRAMOULI; HOFILENA, BRIAN JOSEPH; MAK, CHI CHING; EASTMAN, BRIAN WALTER; BOLLU, VENKATAIAH
To: SAMUMED, LLC
Reel/Frame 048799/0633 →
Continuity (3)
Provisional Application 62574568 · Oct 19, 2017
Provisional Application 62578691 · Oct 30, 2017
Related Publication 20190119263A1 · Apr 25, 2019
Cited By (1)
US 12,522,602