IP Library Granted Patent US 10,654,873
Granted Patent B2
US 10,654,873 · App. 16/332,797 · Granted May 19, 2020

Cytotoxic agents and conjugates thereof

Inventors: Nareshkumar Jain (Ringoes, NJ); Sanjeevani Ghone (Plainsboro, NJ); Sean Smith (Hamilton, NJ); Ian Glassford (King of Prussia, PA); Sylvia J. Degrado (Newtown, PA); Fu-an Kang (Collegeville, PA); Senzhi Zhao (Bensalem, PA)
Assignee: POLYTHERICS LIMITED
C07D498/18A61K31/537A61K47/6803A61K47/6851A61K47/6903A61P35/00
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Quick Facts
Patent No.
US 10,654,873
App. No.
16/332,797
Granted
May 19, 2020
Kind
B2
Abstract

Provided herein are novel maytansinoid compounds of general formula I. Also provided herein are conjugates comprising the compounds linked to a binding protein via a linker, and conjugating reagents comprising the compounds attached via a linker to at least one functional group capable of reacting with a binding protein. Also provided herein are pharmaceutical compositions comprising the compounds and conjugates, therapeutic methods and uses involving the compounds and conjugates, for example in cancer therapy, and novel synthetic processes.

Claims (81)

1. A compound of the general formula I or a salt thereof:

in which R represents a group —Y—OH, —Y—O—R x , —Y—SH, —Y—S—R x , —Y—S(O) 2 NH—R x , —Y—NHS(O) 2 —R x , —Y—C(O)H, —Y—CO 2 H, —Y—C(O)—R x , —Y—C(O)NH—R x , —Y—NHC(O)—R x , —Y—NHR y , —Y—NR x R y , —Y—NR y —NHR z , —Y—CR y ═NOH, —Y—C(NH 2 )═NOH, —Y—C(O)NH 2 , —Y—C(O)NH—NH 2 , or —Y—S(O) 2 NH 2 , in which either Y is not present or Y represents a C 1-6 alkylene, C 2-6 alkenylene, C 2-6 alkynylene or C 1-6 alkyleneoxy group which may be interrupted by an oxygen atom and/or which may optionally be substituted by —OH or —OC 1-4 alkyl, or Y represents a phenylene or C 5-10 heteroarylene group;

R x represents a C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, phenyl, C 5-10 heteroaryl or benzyl group which is substituted by —OH, —SH, —NHR y , or —CO 2 H;

each of R y and R z independently represents a hydrogen atom, a C 1-4 alkyl group, phenyl, C 5-10 heteroaryl or a benzyl group;

X represents OH, OC 1-4 alkyl, SH, S 1-4 alkyl, or CN;

Ra represents a hydrogen atom or a C 1-4 alkyl group;

Rb represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—;

Rc represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—;

Rd represents a C 1-4 alkyl group;

each Re independently represents a halogen atom, an optionally substituted C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl or C 1-6 alkoxy group each of which may be optionally interrupted by an oxygen atom, an optionally substituted phenyl or C 5-10 heteroaryl group, —OH, —CO 2 R v , —C(O)NR v R w , —NR y C(O)R w , NR v R w , —S(O)—R v , S(O) 2 —R v , —S(O) 2 NR v R w , a —CN group, or a —NO 2 group; R v and R w are each independently selected from the group consisting of hydrogen, phenyl, benzyl, and an optionally substituted C 1-6 alkyl, C 2-6 alkenyl or C 2-6 alkynyl group each of which may be optionally interrupted by an oxygen atom; and n is 0, 1, 2, 3 or 4;

Rf represents a hydrogen atom or a C 1-4 alkyl group; and

Rg represents a hydrogen atom or an optionally substituted alkyl, cycloalkyl, alkenyl, alkynyl, aryl, or heteroaryl group.

2. The compound as claimed in claim 1 , wherein R is an —OH, —NH 2 , —SH, —CONH 2 , —SO 2 NH 2 , —CO 2 H, CH 2 OH, or —NHC(O)—C 1-6 alkylene-SH group.

3. The compound as claimed in claim 1 , wherein R is a —NHC(O)—C 1-6 alkyl which alkyl is substituted by —SH.

4. The compound as claimed in claim 1 , wherein any Re group present is selected from the group consisting of a halogen atom, a methoxy group, a —CN group or a —NO 2 group; and/or wherein Rg represents C 1-4 alkyl which is unsubstituted or substituted by N(R i )(R ii ); R i represents a C 1-4 alkyl group; and R ii represents a —C(O)—C 1-6 alkyl group.

5. The compound as claimed in claim 1 , wherein R represents a group —Y—OH, —Y—O—R x , —Y—SH, —Y—CO 2 H, —Y—NHR y , —Y—NR y —NHR z , or —Y—CR y ═NOH, in which either Y is not present or Y represents a C 1-6 alkylene or C 1-6 alkyleneoxy group either of which may be interrupted by an oxygen atom, R x represents a C 1-4 alkyl group substituted by —OH, —SH, —NHR y , or —CO 2 H, and each of R y and R z independently represents a hydrogen atom or a C 1-4 alkyl group; X represents OH, OC 1-4 alkyl, SH, S 1-4 alkyl, or CN; Ra represents a hydrogen atom or a C 1-4 alkyl group; Rb represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—; Rc represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—; Rd represents a C 1-4 alkyl group; each Re independently represents a halogen atom, a CF 3 group, or a C 1-4 alkyl or C 1-4 alkoxy group, and n is 0, 1, 2, 3 or 4; Rf represents a hydrogen atom or a C 1-4 alkyl group; and Rg represents a hydrogen atom or an optionally substituted alkyl, cycloalkyl, alkenyl, alkynyl, aryl, or heteroaryl group.

6. The compound as claimed in claim 1 , in which:

i) Y is not present, or in which Y represents a C 1-4 alkylene or C 1-4 alkyleneoxy group, which may be interrupted by an oxygen atom; and/or

ii) R is an —OH, —NH 2 , —CONH 2 or —CO 2 H group, or a C 1-4 alkylene group substituted by an —OH, —NH 2 , —CONH 2 or —CO 2 H group; and/or R is in the 3- or 4-position of the phenyl ring; and/or

iii) any Re group present is a halogen atom or a methyl or methoxy group; and/or

iv) n is 0, 1 or 2; and/or

v) X represents OH; and/or

vi) Ra represents C 1-4 alkyl; Rb represents hydrogen; Rc represents hydrogen or methoxy; Rd represents C 1-4 alkyl; Re represents chlorine or hydrogen; Rf represents C 1-4 alkyl; and Rg represents C 1-4 alkyl.

7. The compound as claimed in claim 1 , which is a compound of the general formula Ia or a salt thereof:

8. The compound as claimed in claim 1 , which is a compound of the general formula Ib or a salt thereof:

9. A conjugate comprising the compound as claimed in claim 1 linked to a binding protein via a linker, said linker being connected to said compound via the group R of the general formula I;

wherein:

i) the linker includes the group —S—C 1-6 alkylene-; and/or

ii) the binding protein is a full length antibody or an antibody fragment comprising an antigen-binding region of the full length antibody.

10. The conjugate as claimed in claim 9 , wherein the binding protein is IgG1 or IgG4 or a fragment of IgG1 or IgG4.

11. The conjugate as claimed in claim 9 , which includes a portion:

in which W′ represents an electron withdrawing group or a group obtained by reduction of an electron withdrawing group, each of A and B independently represents a C 1-5 alkylene or alkenylene chain, and Pr represents said binding protein bonded to A and B via nucleophiles Nu; or includes a portion:

˜W′—(CH═CH) p —(CH 2 ) 2 -Nu-Pr

in which W′ represents an electron withdrawing group or a group obtained by reduction of an electron withdrawing group, p is 0 or an integer from 1 to 4, and Pr represents said binding protein bonded to the rest of the molecule via a nucleophile Nu.

12. The conjugate as claimed in claim 9 , which includes a portion:

or which includes a portion:

˜NH—CO—Ar′—CO—(CH 2 ) 2 -Nu-Pr

in which Ar′ represents an optionally substituted aryl group.

13. The conjugate as claimed in claim 9 , in which each Nu represents a sulfur atom present in a cysteine residue in the binding protein Pr; or in which each Nu represents an imidazole group present in a polyhistidine tag attached to the binding protein.

14. The conjugate as claimed in claim 9 , in which:

i) the linker includes a pendant polyethylene glycol chain which has a terminal end group of formula —CH 2 CH 2 OR r in which R r represents a hydrogen atom, an alkyl group, or an optionally substituted aryl group; or

ii) at least two ˜(CH 2 —CH 2 —O—)˜ units within a ring; and/or

iii) the linker includes a peptidyl group comprising at least two naturally-occurring alpha amino acids.

15. The conjugate as claimed in claim 9 , wherein the linker includes the sequence Val-Cit-PAB or Val-Ala.

16. A conjugating reagent comprising the compound as claimed in claim 1 , attached via a linker to at least one functional group capable of reacting with a binding protein, said linker being connected to said compound via the group R of the general formula I; and wherein:

i) the conjugating reagent includes a portion

or a salt thereof; or

ii) the conjugating reagent includes a portion:

or

iii) the functional group of the conjugating reagent has the formula:

in which W represents an electron-withdrawing group; each of A and B independently represents a C 1-5 alkylene or alkenylene chain; and either each L independently represents a leaving group, or both Ls together represent a leaving group; or

in which W and A have the meanings given above, L represents a leaving group, and m is 0 to 4; or

˜W—(CH═CH) p —(CH 2 ) 2 -L or ˜W—(CH═CH) p —CH═CH 2

in which W represents an electron withdrawing group, p represents 0 or an integer of from 1 to 4, and L represents a leaving group.

17. The conjugating reagent as claimed in claim 16 , in which said functional group has the formula:

in which Ar′ represents an optionally substituted aryl group.

18. The conjugating reagent as claimed in claim 16 , in which:

i) the or each leaving group includes a portion —(CH 2 CH 2 O) q — in which q is a number of six or more; or

ii) the linker

a) includes a pendant polyethylene glycol chain which has a terminal end group of formula —CH 2 CH 2 OR r in which R r represents a hydrogen atom, an alkyl group, or an optionally substituted aryl group; or

b) has at least two ˜(CH 2 —CH 2 —O—)˜ units within a ring; and/or

c) includes a peptidyl group comprising at least two naturally-occurring alpha amino acids.

19. A pharmaceutical composition comprising the compound as claimed in claim 1 , or a conjugate comprising the compound of claim 1 , together with a pharmaceutically acceptable carrier, optionally together with an additional therapeutic agent.

20. A process for the preparation of a compound of the general formula I or a salt thereof as claimed in claim 1 , which comprises reacting a compound of the general formula:

with an aryl-organometallic reagent in which the aryl moiety is a phenyl group substituted by (Re) n and by R or a protected version of R, the reaction being carried out in the presence of a transition metal catalyst;

wherein, optionally, the aryl-organometallic reagent is an aryl-boronic acid or aryl-boronate ester, and in which the reaction is carried out in the presence of a palladium catalyst in the presence of water and in the absence or substantial absence of oxygen.

21. The process as claimed in claim 20 , wherein R represents a group —Y—OH, —Y—O—R x , —Y—SH, —Y—S—R x , —Y—CO 2 H, —Y—CO—R x , —Y—NHR y , —Y—NR y —NHR z , or —Y—CR y ═NOH, in which either Y is not present or Y represents a C 1-6 alkylene or C 1-6 alkyleneoxy group either of which may be interrupted by an oxygen atom, R x represents a C 1-4 alkyl group substituted by —OH, —SH, —NHR y , or —CO 2 H, and each of R y and R z independently represents a hydrogen atom or a C 1-4 alkyl group; X represents OH, OC 1-4 alkyl, SH, S 1-4 alkyl, or CN; Ra represents a hydrogen atom or a C 1-4 alkyl group; Rb represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—; Rc represents hydrogen, OH, C 1-4 alkoxy or C 1-4 alkylC(O)O—; Rd represents a C 1-4 alkyl group; each Re independently represents a halogen atom, a CF 3 group, or a C 1-4 alkyl or C 1-4 alkoxy group, and n is 0, 1, 2, 3 or 4; Rf represents a hydrogen atom or a C 1-4 alkyl group; and Rg represents a hydrogen atom or an optionally substituted alkyl, cycloalkyl, alkenyl, alkynyl, aryl, or heteroaryl group.

22. The process as claimed in claim 20 , in which the aryl-organometallic reagent is a boronic acid of the general formula:

or a protected version thereof and the reaction is carried out in the presence of a palladium catalyst.

23. An intermediate useful for preparing a compound of the general formula I or a salt thereof as claimed in claim 1 , which has the general formula

and R prot is the group R of the general formula I carrying a protecting group; or a salt thereof;

wherein optionally, R includes an —OH or —SH group and the protecting group is a silyl group, an acyl group, or an arylmethyl group; R includes a —CO 2 H group and the protecting group is methyl, ethyl, t-butyl, benzyl, p-methoxybenzyl, 9-fluorenylmethyl, trimethylsilyl, t-butyldimethylsilyl, or diphenylmethyl; or R includes an —NHR′, —NHR″ or —NHR′″ group and the protecting group is t-butoxycarbonyl, trityl, benzyloxycarbonyl, 9-fluorenylmethoxycarbonyl, formyl, trimethylsilyl, or t-butyldimethylsilyl.

24. A compound as claimed in claim 1 , wherein R is selected from —Y—OH, —Y—SH, —Y—S(O) 2 NH—R x , —Y—NHS(O) 2 —R x , —Y—CO 2 H, —Y—C(O)NH—R x , —Y—NHC(O)—R x , —Y—NHR y or —Y—S(O) 2 NH 2 , in which either Y is not present or Y represents a C 1-6 alkylene, and wherein R x represents a C 1-6 alkyl which is substituted by —OH, —SH, —NH 2 or —CO 2 H; and R y represents a hydrogen atom or a C 1-4 alkyl group.

25. A compound as claimed in claim 1 , wherein R represents a group selected from —Y—SH, —Y—S(O) 2 NH—R x , —Y—NHS(O) 2 —R x , —Y—C(O)NH—R x , —Y—NHC(O)—R x , or —Y—S(O) 2 NH 2 , wherein R x represents a C 1-6 alkyl which is substituted by —OH, —SH, —NH 2 or —CO 2 H.

26. A compound as claimed in claim 1 , wherein R represents —Y—NHC(O)—R x , wherein Y is absent and R x represents a C 1-6 alkyl which is substituted by —OH, —SH, —NH 2 or —CO 2 H.

27. A compound as claimed in claim 1 , wherein Rd is methyl.

28. A compound as claimed in claim 1 , wherein X represents OH.

29. A compound as claimed in claim 1 , wherein Ra represents a C 1-4 alkyl group and Rb represents hydrogen.

30. A compound as claimed in claim 1 , wherein Rc represents hydrogen or methoxy.

31. A compound as claimed in claim 1 , wherein each Re independently represents a halogen atom, a CF 3 group, a C 1-4 alkyl group, a C 1-4 alkoxy group, a —CN group, or a NO 2 group, and wherein n is 0, 1 or 2.

32. A compound as claimed in claim 1 , wherein Rg represents C 1-4 alkyl which is unsubstituted or substituted by N(R i )(R ii ), and wherein R i represents a C 1-4 alkyl group, and R ii represents a —C(O)—C 1-6 alkyl group.

Assignments (4)
RELEASE OF SECURITY INTEREST Recorded May 7, 2021
From: OXFORD FINANCE LLC,
To: ABZENA (UK) LIMITED (F/K/A POLYTHERICS LIMITED); ABZENA (CAMBRIDGE) LIMITED
Reel/Frame 056174/0440 →
SECURITY INTEREST Recorded Aug 15, 2019
From: ABZENA (UK) LIMITED (F/K/A POLYTHERICS LIMITED); ABZENA (CAMBRIDGE) LIMITED
To: OXFORD FINANCE LLC, AS COLLATERAL AGENT AND AS A LENDER
Reel/Frame 050071/0600 →
CHANGE OF NAME Recorded Jul 25, 2019
From: POLYTHERICS LIMITED
To: ABZENA (UK) LIMITED
Reel/Frame 049860/0743 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 13, 2019
From: JAIN, NARESHKUMAR; GHONE, SANJEEVANI; SMITH, SEAN; GLASSFORD, IAN; DEGRADO, SYLVIA J.; KANG, FU-AN; ZHAO, SENZHI
To: POLYTHERICS LIMITED
Reel/Frame 048585/0382 →