Protein biomarkers for diseases associated with the contact activation system
Provided herein are methods and kits for analyzing a biological sample obtained from a subject having, suspected of having, or being at risk for a disease associated with the contact activation system.
1. A method, comprising:
(i) providing a biological sample obtained from a subject having or suspected of having hereditary angioedema (HAE); and
(ii) measuring the level of a protein biomarker set, which comprises Interleukin-36 alpha (IL-1F6);
(iii) identifying the subject as a patient having HAE if the level of IL-1F6 in the biological sample obtained from the subject is at least 1.1-fold lower than the level of IL-1F6 of a control subject, wherein the control subject is a subject not having HAE; and
(iv) administering to the subject identified as having HAE an effective amount of a therapeutic agent for treating HAE; wherein therapeutic agent is a plasma kallikrein (pKal) inhibitor, a bradykinin 2 receptor (B2R) inhibitor, and/or a C1 esterase inhibitor.
2. The method of claim 1 , wherein the protein biomarker set consists of 2-10 proteins.
3. The method of claim 1 , wherein the biological sample is a serum sample or a plasma sample.
4. The method of claim 1 , wherein the HAE is type I HAE or type II HAE.
5. The method of claim 1 , wherein step (i) comprises collecting the biological sample into an evacuated blood collection tube, which comprises one or more protease inhibitors.
6. The method of claim 1 , wherein step (ii) is performed using an enzyme-linked immunosorbent assay (ELISA), an immunoblotting assay, or a lateral flow assay.
7. The method of claim 1 , wherein the subject is a human patient.
8. The method of claim 1 , wherein the pKal inhibitor is an anti-pKal antibody or an inhibitory peptide.
9. The method of claim 8 , wherein the pKal inhibitor is lanadelumab or ecallantide.
10. The method of claim 1 , wherein the B2R inhibitor is an inhibitory peptide, optionally wherein the inhibitory peptide is icatibant.
11. The method of claim 1 , wherein the therapeutic agent is a C1 esterase inhibitor, which is a human plasma-derived C1 esterase inhibitor.
12. The method of claim 1 , wherein the protein biomarker set further comprises
a mitochondrial protein selected from the group consisting of ATP synthase subunit 0 (ATPO), cyclophilin F, and mitochondrial heat shock protein 60 (HSP60).
13. The method of claim 1 , wherein the protein biomarker set further comprises 14-3-3 zeta/delta or 14-3-3 beta/alpha.
14. The method of claim 1 , wherein the protein biomarker set further comprises a protein kinase selected from the group consisting of protein kinase YES, protein kinase LYN, and mitogen-activated protein kinase 14 (MAPK14).
15. The method of claim 1 , wherein the protein biomarker set further comprises a protein selected from the group consisting of glycogen synthase kinase 3 alpha/beta, ATP-dependent RNA helicase DDX19B, and eukaryotic translation initiation factor 5A-1.
16. The method of claim 1 , wherein the level of IL-1F6 in the biological sample obtained from the subject is at least 1.5-fold lower than the level of IL-1F6 of the control subject.
17. The method of claim 1 , wherein the level of IL-1F6 in the biological sample obtained from the subject is at least 2.0-fold lower than the level of IL-1F6 of the control subject.
18. The method of claim 1 , wherein the level of IL-1F6 in the biological sample obtained from the subject is at least 5-fold lower than the level of IL-1F6 of the control subject.