IP Library Granted Patent US 11,623,932
Granted Patent B2
US 11,623,932 · App. 16/649,732 · Granted Apr 11, 2023

Protein degraders and uses thereof

Inventors: Nello Mainolfi (Belmont, MA); Nan Ji (Arlington, MA); Yi Zhang (Belmont, MA); Matthew M. Weiss (Boston, MA)
Assignee: KYMERA THERAPEUTICS, INC.
C07D495/14
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 11,623,932
App. No.
16/649,732
Granted
Apr 11, 2023
Kind
B2
Abstract

The present invention provides compounds, compositions thereof, and methods of using the same for the targeted degradation of proteins, and the treatment of target protein-mediated disorders.

Claims (38)

1. A compound of formula I:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is a bivalent moiety selected from a covalent bond, —CH 2 —, —C(O)—, —C(S)—, or

R 1 is hydrogen, deuterium, halogen, —CN, —OR, —SR, —S(O)R, —S(O) 2 R, —NR 2 , or an optionally substituted C 1-4 aliphatic;

each R 2 is independently hydrogen, —R 6 , halogen, —CN, —NO 2 , —OR, —SR, —NR 2 , —S(O) 2 R, —S(O) 2 NR 2 , —S(O)R, —C(O)R, —C(O)OR, —C(O)NR 2 , —C(O)N(R)OR, —OC(O)R, —OC(O)NR 2 , —N(R)C(O)OR, —N(R)C(O)R, —N(R)C(O)NR 2 , or —N(R)S(O) 2 R;

Ring A is a bi- or tricyclic ring selected from

 wherein

Ring B is a fused ring selected from 6-membered aryl containing 0-2 nitrogen atoms, 5 to 7-membered partially saturated carbocyclyl, 5 to 7-membered partially saturated heterocyclyl with 1-2 heteroatoms independently selected from nitrogen, oxygen and sulfur, and a 5-membered heteroaryl with 1-3 heteroatoms independently selected from nitrogen, oxygen and sulfur;

R 3 is selected from hydrogen, halogen, —OR, —NR 2 , or —SR;

each R 4 is independently hydrogen, —R 6 , halogen, —CN, —NO 2 , —OR, —SR, —NR 2 , —S(O) 2 R, —S(O) 2 NR 2 , —S(O)R, —C(O)R, —C(O)OR, —C(O)NR 2 , —C(O)N(R)OR, —OC(O)R, —OC(O)NR 2 , —N(R)C(O)OR, —N(R)C(O)R, —N(R)C(O)NR 2 , or —N(R)S(O) 2 R;

R 5 is hydrogen, C 1-4 aliphatic, or —CN;

each R 6 is independently an optionally substituted group selected from C 1-6 aliphatic, phenyl, a 4-7 membered saturated or partially unsaturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and a 5-6 membered heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur;

L is a covalent bond or a bivalent, saturated or unsaturated, straight or branched C 1-50 hydrocarbon chain, wherein 0-6 methylene units of L are independently replaced by -Cy-, —O—, —NR—, —S—, —OC(O)—, —C(O)O—, —C(O)—, —S(O)—, —S(O) 2 —, —NRS(O) 2 —, —S(O) 2 NR—, —NRC(O)—, —C(O)NR—, —OC(O)NR—, —NRC(O)O—,

 wherein:

each -Cy- is independently an optionally substituted bivalent ring selected from phenylenyl, an 8-10 membered bicyclic arylenyl, a 4-7 membered saturated or partially unsaturated carbocyclylenyl, a 4-7 membered saturated or partially unsaturated spiro carbocyclylenyl, an 8-10 membered bicyclic saturated or partially unsaturated carbocyclylenyl, a 4-7 membered saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, a 4-7 membered saturated or partially unsaturated spiro heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, an 8-10 membered bicyclic saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, a 5-6 membered heteroarylenyl having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and an 8-10 membered bicyclic heteroarylenyl having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur;

TBM is a target binding moiety, wherein the target binding moiety is a BRD4 binding moiety;

m is 0, 1, 2, 3 or 4;

each of n is independently 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; and

each R is independently hydrogen, or an optionally substituted group selected from C 1-6 aliphatic, phenyl, a 4-7 membered saturated or partially unsaturated heterocyclic having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and a 5-6 membered heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or:

two R groups on the same nitrogen are taken together with their intervening atoms to form a 4-7 membered saturated, partially unsaturated, or heteroaryl ring having 0-3 heteroatoms, in addition to the nitrogen, independently selected from nitrogen, oxygen, and sulfur.

2. The compound of claim 1 , wherein X 1 is selected from a covalent bond, —CH 2 —, —C(O)—, and

3. The compound of claim 1 , wherein R 1 is hydrogen, deuterium, halogen, —OR, —SR, —S(O)R, —S(O) 2 R, —NR 2 , or an optionally substituted C 1-4 aliphatic.

4. The compound of claim 1 , wherein Ring A is a bi- or tricyclic ring selected from:

wherein Ring B is other than imidazo or benzo;

wherein Ring B is other than benzo;

wherein Ring B is other than benzo;

wherein Ring B is other than benzo;

5. The compound of claim 1 , wherein Ring B is selected from 6-membered aryl containing 0-2 nitrogen atoms, 6-membered partially saturated carbocyclyl, and 6-membered partially saturated heterocyclyl with 1-2 heteroatoms independently selected from nitrogen, oxygen and sulfur.

6. The compound of claim 1 , wherein R 3 is selected from hydrogen, halogen, —OR, and —NR 2 .

7. The compound of claim 1 , wherein R 4 is hydrogen, —R 6 , halogen, —CN, —NO 2 , —OR, —SR, —NR 2 , —S(O) 2 R, —S(O) 2 NR 2 , —S(O)R, —C(O)R, —C(O)OR, —C(O)NR 2 , —C(O)N(R)OR, —OC(O)R, —OC(O)NR 2 , —N(R)C(O)OR, —N(R)C(O)R, —N(R)C(O)NR 2 , or —N(R)S(O) 2 R.

8. The compound of claim 1 , wherein L is a bivalent, saturated or unsaturated, straight or branched C 1-50 hydrocarbon chain, wherein 0-6 methylene units of L are independently replaced by -Cy-, —O—, —NR—, —S—, —OC(O)—, —C(O)O—, —C(O)—, —S(O)—, —S(O) 2 —, —NRS(O) 2 —, —S(O) 2 NR—, —NRC(O)—, —C(O)NR—, —OC(O)NR—, —NRC(O)O—,

9. The compound of claim 1 , wherein the BRD4 binding moiety is:

wherein R denotes attachment to

10. The compound of claim 1 , wherein said compound is selected from:

or a pharmaceutically acceptable salt thereof.

11. A pharmaceutical composition comprising a compound according to claim 1 , or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier, adjuvant, or vehicle.

12. A method of degrading a target protein in a biological sample comprising contacting the sample with the compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein the target protein is BRD4.

13. A method of treating a BRD4-mediated disorder, disease, or condition in a patient comprising administering to said patient the compound of claim 1 or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition thereof.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 25, 2020
From: MAINOLFI, NELLO; JI, NAN; ZHANG, YI; WEISS, MATTHEW M.
To: KYMERA THERAPEUTICS, INC.
Reel/Frame 052221/0950 →
Continuity (4)
Provisional Application 62714527 · Aug 3, 2018
Provisional Application 62610403 · Dec 26, 2017
Provisional Application 62562206 · Sep 22, 2017
Related Publication 20210238193A1 · Aug 5, 2021
Cited By (4)
US 12,454,520 US 12,516,068 US 12,559,492 US 12,715,877