IP Library Granted Patent US 11,680,042
Granted Patent B2
US 11,680,042 · App. 16/650,429 · Granted Jun 20, 2023

Compounds, reagents, and uses thereof

Inventor: Qibo Zhang (Cary, NC)
Assignee: Metabolon, Inc.
C07C323/54C07C319/18C07K16/44G01N30/7233
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Quick Facts
Patent No.
US 11,680,042
App. No.
16/650,429
Granted
Jun 20, 2023
Kind
B2
Abstract

The present invention provides a compound of formula (I), formula (II), formula (III), (IV) or a salt thereof, compositions and methods of making the compound, methods and reagents for measuring the compound, and kits using the same. The use of a compound of formula (I), formula (II), formula (III), or formula (IV) for assessing or monitoring kidney function in a subject, determining predisposition to developing reduced kidney function, classifying a subject according to level of kidney function, and diagnosing or monitoring chronic kidney disease is also described.

Claims (89)

1. A compound represented by the following formula:

or a salt thereof, wherein *indicates 13 C; and the compound is at least 60% pure.

2. A kit comprising a compound of claim 1 , or a salt thereof, and instructions for measuring the level of the compound in a biological sample obtained from a subject.

3. A method for preparing a compound represented by the following formula:

or a salt thereof, comprising the steps of:

a) reacting a compound represented by the following formula:

or a salt thereof, with a Wittig reagent R′ 3 P═CH 2 SMe, wherein R′ is Ph or an electron withdrawing group, to form a compound of formula (Va) or a salt thereof:

b) deprotecting the compound of (Va) or a salt thereof to form a compound of formula (I) or a salt thereof.

4. The method of claim 3 , wherein the method is for preparing a compound of formula (III):

or a salt thereof, and wherein

(i) the method comprises the steps of:

a) reacting a compound of formula (VI) or a salt thereof:

with a Wittig reagent R′ 3 P═CH 2 SMe, wherein R′ is Ph or an electron-withdrawing group, to form a compound of formula (VIa) or a salt thereof:

b) purifying the compound of (VIa) or a salt thereof to yield a compound of formula (VIb) or a salt thereof:

c) deprotecting the compound of formula (VIb) or a salt thereof to form the compound of formula (III) or a salt thereof; or

(ii) the method comprises the steps of:

a) reacting a compound of formula (VI) or a salt thereof:

with a Wittig reagent R′ 3 P═CH 2 SMe, wherein R′ is Ph or an electron-withdrawing group, to form a compound of formula (VIa) or a salt thereof:

b) deprotecting the compound of formula (VIa) or a salt thereof to form a compound of formula (VIc) or a salt thereof:

and

c) purifying the compound of formula (VIc) or a salt thereof to yield the compound of formula (III) or a salt thereof.

5. A method of preparing a compound represented by the following formula:

or a salt thereof, wherein

(i) the method comprises the steps of:

a) reacting a compound of formula (VII):

or a salt thereof, with a Wittig reagent R′ 3 P═CH 2 SMe, to form a compound of formula (VIIa),

or a salt thereof, wherein R′ is Ph or an electron-withdrawing group, and R 1 and R 2 are each independently a silyl group;

b) purifying the compound of formula (VIIa) or a salt thereof, to yield a compound of formula (VIIb) or a salt thereof:

c) deprotecting the compound of formula (VIIb) or a salt thereof to form the compound of formula (III) or a salt thereof; or

(ii) the method comprises the steps of:

a) reacting a compound of formula (VII):

or a salt thereof, with a Wittig reagent R′ 3 P═CH 2 SMe, to form a compound of formula (VIIa) or a salt thereof,

wherein R′ is Ph or an electon-withdrawing group, and R 1 and R 2 are each independently a silyl group;

b) deprotecting the compound of formula (VIIa) or a salt thereof to form a compound of formula (VIIc) or a salt thereof:

c) purifying the compound of formula (VIIc) or a salt thereof to yield the compound of formula (III) or a salt thereof.

6. A method of preparing a compound represented by the following formula:

or a salt thereof, wherein

(i) the method comprises the steps of:

a) reacting a compound of formula (IX):

with methanethiol to form a compound of formula (VIIIa) or a salt thereof:

b) purifying the compound of formula (VIIIa) or a salt thereof to yield a compound of formula (VIIIb) or a salt thereof:

c) deprotecting the compound of formula (VIIIb) or a salt thereof to form the compound of formula (III) or a salt thereof, or

(ii) the method comprises the steps of:

a) reacting a compound of formula (IX):

with methanethiol to form a compound of formula (VIIIa) or a salt thereof:

b) deprotecting the compound of formula (VIIIa) or a salt thereof to form a compound of formula (VIIIb) or a salt thereof:

c) purifying the compound of formula (VIIIb) or a salt thereof to yield the compound of formula (III) or a salt thereof,

wherein:

R 1 and R 2 are each independently a silyl group and R 3 is a t-butyl group or a silyl group.

7. The method of claim 4 , wherein the method comprises the steps of:

a) reacting a compound of formula (VI) or a salt thereof:

with a Wittig reagent R′ 3 P═CH 2 SMe, wherein R′ is Ph or an electron-withdrawing group, to form a compound of formula (VIa) or a salt thereof:

b) purifying the compound of (VIa) or a salt thereof to yield a compound of formula (VIb) or a salt thereof:

c) deprotecting the compound of formula (VIb) or a salt thereof to form the compound of formula (III) or a salt thereof.

8. The method of claim 4 , wherein the method comprises the steps of:

a) reacting a compound of formula (VI) or a salt thereof:

with a Wittig reagent R′ 3 P═CH 2 SMe, wherein R′ is Ph or an electron-withdrawing group, to form a compound of formula (VIa) or a salt thereof:

b) deprotecting the compound of formula (VIa) or a salt thereof to form a compound of formula (VIc) or a salt thereof:

c) purifying the compound of formula (VIc) or a salt thereof to yield the compound of formula (III) or a salt thereof.

9. The method of claim 5 , wherein the method comprises the steps of:

a) reacting a compound of formula (VII):

or a salt thereof, with a Wittig reagent R′ 3 P═CH 2 SMe, to form a compound of formula (VIIa),

or a salt thereof, wherein R′ is Ph or an electron-withdrawing group, and R 1 and R 2 are each independently a silyl group;

b) purifying the compound of formula (VIIa) or a salt thereof, to yield a compound of formula (VIIb) or a salt thereof:

c) deprotecting the compound of formula (VIIb) or a salt thereof to form the compound of formula (III) or a salt thereof.

10. The method of claim 5 , wherein the method comprises the steps of:

a) reacting a compound of formula (VII):

or a salt thereof, with a Wittig reagent R′ 3 P═CH 2 SMe, to form a compound of formula (VIIa) or a salt thereof,

wherein R′ is Ph or an electron-withdrawing group, and R 1 and R 2 are each independently a silyl group;

b) deprotecting the compound of formula (VIIa) or a salt thereof to form a compound of formula (VIIc) or a salt thereof:

c) purifying the compound of formula (VIIc) or a salt thereof to yield the compound of formula (III) or a salt thereof.

11. The method of claim 6 , wherein the method comprises the steps of:

a) reacting a compound of formula (IX):

with methanethiol to form a compound of formula (VIIIa) or a salt thereof:

b) purifying the compound of formula (VIIIa) or a salt thereof to yield a compound of formula (VIIIb) or a salt thereof:

c) deprotecting the compound of formula (VIIIb) or a salt thereof to form the compound of formula (III) or a salt thereof.

12. The method of claim 6 , wherein the method comprises the steps of:

a) reacting a compound of formula (IX):

with methanethiol to form a compound of formula (VIIIa) or a salt thereof:

b) deprotecting the compound of formula (VIIIa) or a salt thereof to form a compound of formula (VIIIb) or a salt thereof:

c) purifying the compound of formula (VIIIb) or a salt thereof to yield the compound of formula (III) or a salt thereof.

13. The compound of claim 1 , wherein the compound is represented by the following formula:

14. The compound of claim 1 , wherein the compound is represented by the following formula:

15. The compound of claim 1 , wherein the compound is represented by the following formula:

16. The compound of claim 1 , wherein the compound is represented by the following formula:

17. The compound of claim 1 , wherein the compound is represented by the following formula:

18. The compound of claim 1 , wherein the compound is represented by the following formula:

19. The compound of claim 1 , wherein the compound is represented by the following formula:

20. The compound of claim 1 , wherein the compound is represented by the following formula:

Assignments (4)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNOR'S NAME FROM " PERCEPTIVE CREDIT HOLDINGS ILL, LP" TO "PERCEPTIVE CREDIT HOLDINGS III, LP" PREVIOUSLY RECORDED AT REEL: 66971 FRAME: 0054. ASSIGNOR(S) HEREBY CONFIRMS THE RELEASE OF SECURITY INTEREST. Recorded Apr 4, 2024
From: PERCEPTIVE CREDIT HOLDINGS III, LP
To: METABOLON, INC.
Reel/Frame 067019/0662 →
RELEASE OF SECURITY INTEREST Recorded Apr 1, 2024
From: PERCEPTIVE CREDIT HOLDINGS ILL, LP
To: METABOLON, INC.
Reel/Frame 066971/0054 →
SECURITY AGREEMENT Recorded Jul 24, 2020
From: METABOLON, INC.
To: PERCEPTIVE CREDIT HOLDINGS III, LP
Reel/Frame 053313/0406 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 23, 2020
From: ZHANG, QIBO
To: METABOLON, INC.
Reel/Frame 052479/0136 →