IP Library Granted Patent US 10,874,649
Granted Patent B2
US 10,874,649 · App. 16/719,332 · Granted Dec 29, 2020

2-spiro-5- and 6-hydroxamic acid indanes as HDAC inhibitors

Inventors: Xiaozhang Zheng (Lexington, MA); Pui Yee Ng (Lexington, MA); Mary-Margaret Zablocki (Revere, MA)
Assignee: Valo Early Discovery, Inc.
A61K31/438C07D209/54C07D221/20C07D401/04C07D401/06A61K31/407A61P25/14A61P25/28A61P35/00
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Quick Facts
Patent No.
US 10,874,649
App. No.
16/719,332
Granted
Dec 29, 2020
Kind
B2
Abstract

The present invention is directed to inhibitors of histone deacetylases (HDACs) such as HDAC6, and their use in the treatment of diseases such as cell proliferative diseases (e.g., cancer), neurological (e.g., neurodegenerative disease or neurodevelopmental disease), inflammatory or autoimmune disease, infection, metabolic disease, hematologic disease, or cardiovascular disease.

Claims (39)

1. A compound of the Formula I:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 , X 2 , X 3 , X 4 , X 5 , and X 6 are each independently, at each occurrence, —CR 1 R 2 — or —C(O)—;

Y 1 , Y 2 , Y 3 , and Y 4 are each independently, at each occurrence, N or CR 1 , wherein —C(O)NHOH is attached at Y 2 or Y 3 , and Y 2 or Y 3 is a carbon atom when attached to —C(O)NHOH;

L is a bond, —(CR 1 R 2 ) p —, —C(O)NR 3 —, —S(O) 2 —, —S(O) 2 NR 3 —, —S(O)—, —S(O)NR 3 —, —C(O)(CR 1 R 2 ) p O—, or —C(O)(CR 1 R 2 ) p ;

R is —H, —C 1 -C 6 alkyl, —C 2 -C 6 alkenyl, —C 4 -C 8 cycloalkenyl, —C 2 -C 6 alkynyl, —C 3 -C 8 cycloalkyl, —C 5 -C 12 spirocycloalkyl, heterocyclyl, spiroheterocyclyl, aryl, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, or O, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, spirocycloalkyl, heterocyclyl, spiroheterocyclyl, aryl, or heteroaryl is optionally substituted with one or more —OH, halogen, oxo, —NO 2 , —CN, —R 1 , —R 2 , —SR 3 , —OR 3 , —NR 3 , —NR 3 R 4 , —S(O) 2 NR 3 R 4 , —S(O) 2 R 1 , —C(O)R 1 , —CO 2 R 1 , —NR 3 S(O) 2 R 1 , —S(O)R 1 , —S(O)NR 3 R 4 , —NR 3 S(O)R 1 , heterocyclyl, aryl, or heteroaryl;

R 1 and R 2 are independently, at each occurrence, —H, —R 3 , —R 4 , —C 1 -C 6 alkyl, —C 2 -C 6 alkenyl, —C 4 -C 8 cycloalkenyl, —C 2 -C 8 alkynyl, —C 3 -C 6 cycloalkyl, heterocyclyl, aryl, heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P and O, —OH, halogen, —NO 2 , —CN, —NH(C 1 -C 6 alkyl), —N(C 1 -C 6 alkyl) 2 , —S(O) 2 N(C 1 -C 6 alkyl) 2 , —N(C 1 -C 6 alkyl)S(O) 2 R 5 , —S(O) 2 (C 1 -C 6 alkyl), —(C 1 -C 6 alkyl)S(O) 2 R 5 , —C(O)C 1 -C 6 alkyl, —CO 2 C 1 -C 6 alkyl, —N(C 1 -C 6 alkyl)S(O) 2 (C 1 -C 6 alkyl), or —(CHR 5 ) p NR 3 R 4 , wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl is optionally substituted with one or more —OH, halogen, —NO 2 , oxo, —CN, —R 5 , —OR 3 , —NHR 3 , —NR 3 R 4 , —S(O) 2 N(R 3 ) 2 , —S(O) 2 R 5 , —C(O)R 5 , —CO 2 R 5 , —NR 3 S(O) 2 R 5 , —S(O)R 5 , —S(O)NR 3 R 4 , —NR 3 S(O)R 5 , heterocyclyl, aryl, or heteroaryl;

or R 1 and R 2 , when on the same atom, combine with the carbon atom to which they are attached to form a cycloalkyl, heterocyclyl, spirocycloalkyl, spiroheterocyclyl, or spirocycloalkenyl;

or R 1 and R 2 , when on adjacent or non-adjacent atoms, combine to form a heterocyclyl, cycloalkyl, aryl, heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P and O, or cycloalkenyl;

R 3 and R 4 are independently, at each occurrence, —H, —C 1 -C 6 alkyl, —C 2 -C 6 alkenyl, —C 4 -C 6 cycloalkenyl, —C 2 -C 6 alkynyl, —C 3 -C 6 cycloalkyl, heterocyclyl, aryl, heteroaryl containing 1-5 heteroatoms selected from N, S, P, and O, —S(O) 2 N(C 1 -C 6 alkyl) 2 , —S(O) 2 (C 1 -C 6 alkyl), —(C 1 -C 6 alkyl)S(O) 2 R 5 , —C(O)C 1 -C 6 alkyl, —CO 2 C 1 -C 6 alkyl, or —(CHR 5 ) p N(C 1 -C 6 alkyl) 2 , wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, and heteroaryl is optionally substituted with one or more substituents selected from —OH, halogen, —NO 2 , oxo, —CN, —R 5 , —O(C 1 -C 6 alkyl), —NH(C 1 -C 6 alkyl), —N(C 1 -C 6 alkyl) 2 , —S(O) 2 N(C 1 -C 6 alkyl) 2 , —S(O) 2 NH(C 1 -C 6 alkyl), —C(O)C 1 -C 6 alkyl, —CO 2 C 1 -C 6 alkyl, —N(C 1 -C 6 alkyl)S(O) 2 (C 1 -C 6 alkyl), —S(O)R 5 , —S(O)N(C 1 -C 6 alkyl) 2 , —N(C 1 -C 6 alkyl)S(O)R 5 , heterocyclyl, aryl, or heteroaryl;

R 5 is independently, at each occurrence, —H, —C 1 -C 6 alkyl, —C 2 -C 6 alkenyl, —C 4 -C 6 cycloalkenyl, —C 2 -C 6 alkynyl, —C 3 -C 6 cycloalkyl, heterocyclyl, aryl, heteroaryl containing 1-5 heteroatoms selected from N, S, P and O, —OH, halogen, —NO 2 , —CN, —NH(C 1 -C 6 alkyl), —N(C 1 -C 6 alkyl) 2 , —S(O) 2 NH(C 1 -C 6 alkyl), —S(O) 2 N(C 1 -C 6 alkyl) 2 , —S(O) 2 (C 1 -C 6 alkyl), —C(O)C 1 -C 6 alkyl, —CO 2 C 1 -C 6 alkyl, —N(C 1 -C 6 alkyl)SO 2 (C 1 -C 6 alkyl), —S(O)(C 1 -C 6 alkyl), —S(O)N(C 1 -C 6 alkyl) 2 , —N(C 1 -C 6 alkyl)S(O)(C 1 -C 6 alkyl), or —(CH 2 ) p N(C 1 -C 6 alkyl) 2 ;

p is 0, 1, 2, 3, 4, 5, or 6;

n is 0, 1, or 2;

m is 0, 1, or 2; and

wherein the sum m+n=2.

2. The compound of claim 1 , wherein n is 0.

3. The compound of claim 1 , wherein n is 1.

4. The compound of claim 1 , wherein X 1 is —CH 2 — and X 2 is —CH 2 —.

5. The compound of claim 1 , wherein X 5 is —C(O)—.

6. The compound of claim 4 , wherein Y 1 and Y 4 are each CR 1 , wherein —C(O)NHOH is attached at Y 2 or Y 3 , and Y 2 or Y 3 is a carbon atom when attached to —C(O)NHOH.

7. The compound of claim 6 , wherein L is a bond, —(CR 1 R 2 ) p —, or —C(O)(CR 1 R 2 ) p —.

8. The compound of claim 7 , wherein p is 0 or 1.

9. The compound of claim 8 , wherein R is —H or an optionally substituted group selected from —C 1 -C 6 alkyl, aryl, and heteroaryl.

10. The compound of claim 9 , wherein R is an optionally substituted group selected from aryl or heteroaryl.

11. The compound of claim 1 , wherein the compound is of the Formula IA-3:

12. The compound of claim 1 , wherein the compound is of the Formula IA-5, Formula IA-6, Formula IA-7, or Formula IA-8:

13. The compound of claim 1 , wherein the compound is of the Formula IB-3, Formula IB-5, Formula IB-6, Formula IB-7, or Formula IB-8:

14. A compound of claim 1 selected from:

(R)—N-hydroxy-1′-methyl-2′-oxo-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-32);

(S)—N-hydroxy-1′-methyl-2′-oxo-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-33);

(R)-1′-benzyl-N-hydroxy-2′-oxo-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-34);

(S)-1′-benzyl-N-hydroxy-2′-oxo-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-35);

(R)—N-hydroxy-2′-oxo-1′-phenyl-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (1-36);

(S)—N-hydroxy-2′-oxo-1′-phenyl-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-37);

N-hydroxy-1′-methyl-6′-oxo-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-39);

N-hydroxy-1′-methyl-2′-oxo-1,3-dihydrospiro[indene-2,4′-piperidine]-5-carboxamide (I-40);

N-hydroxy-1′-methyl-1,3-dihydrospiro[indene-2,3′-piperidine]-5-carboxamide (I-41); and

N-hydroxy-1′-methyl-1,3-dihydrospiro[indene-2,4′-piperidine]-5-carboxamide (I-42).

15. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable carrier.

Assignments (6)
RELEASE OF SECURITY INTEREST Recorded Oct 17, 2023
From: FIRST-CITIZENS BANK & TRUST COMPANY, AS AGENT
To: VALO HEALTH, INC.; VALO HEALTH, LLC
Reel/Frame 065255/0660 →
SECURITY INTEREST Recorded Jul 6, 2023
From: VALO HEALTH, LLC; VALO HEALTH, INC.
To: FIRST-CITIZENS BANK & TRUST COMPANY, AS AGENT
Reel/Frame 064207/0957 →
MERGER Recorded Sep 8, 2021
From: VALO EARLY DISCOVERY, INC.
To: VALO HEALTH, INC.
Reel/Frame 057438/0025 →
CHANGE OF NAME Recorded Sep 16, 2020
From: INTEGRAL EARLY DISCOVERY, INC.
To: VALO EARLY DISCOVERY, INC.
Reel/Frame 053787/0138 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 10, 2020
From: ZHENG, XIAOZHANG; NG, PUI YEE; ZABLOCKI, MARY-MARGARET
To: FORMA THERAPEUTICS, INC.
Reel/Frame 053737/0763 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 5, 2020
From: FORMA THERAPEUTICS, INC.
To: INTEGRAL EARLY DISCOVERY, INC.
Reel/Frame 053402/0298 →
Continuity (3)
Division 16309980
Provisional Application 62351399 · Jun 17, 2016
Related Publication 20200121655A1 · Apr 23, 2020
Cited By (3)
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