IP Library Patent Application 16723438
Patent Application
App. No. 16/723,438

COMPOUNDS THAT PARTICIPATE IN COOPERATIVE BINDING AND USES THEREOF

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Patent No.
US None
App. No.
16/723,438
Abstract

The disclosure features macrocyclic compounds, alone and in combination with other therapeutic agents, as well as pharmaceutical compositions and protein complexes thereof, capable of modulating biological processes including RAS and RAS-RAF inhibition, and their uses in the treatment of cancers.

Claims (158)

1 . A compound of formula I:

a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein:

Q is a bicyclic arylene, a bicyclic heteroarylene, or a bicyclic heterocyclylene, wherein a first ring in Q is bonded to X, and a second ring in Q is bonded to Z, and wherein Q is optionally substituted;

X is a bond; a straight chain C 1 -C 3 alkylene optionally substituted with 1 to 3 substituents independently selected from fluoro, —CN, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl; —O—; —S(O) 0-2 —; *—CH 2 O—; *—CH 2 —S(O) 0-2 —; *—O—CH 2 —; or *—CH 2 —S(O) 0-2 —, wherein “*” represents a portion of X bound to —C(R 4 )(R 5 )—;

Y is —O—, —NH— or —N(C 1 -C 3 alkyl)-;

ring Z is phenyl or a 6-membered heteroaryl;

R 1 is optionally substituted C 1 -C 6 alkyl, —(CH 2 ) 0-1 —(C 3 -C 6 optionally substituted cycloalkyl), —(CH 2 ) 0-1 -(optionally substituted aryl), or optionally substituted heterocyclyl;

R 2 is:

wherein:

ring A is a 4-8 membered cycloalkyl or a 4-8 membered heterocyclyl;

W is —N(R 12 )—, —O—, or —C(R 12a )(R 12b )—;

each R A is each independently fluoro; chloro; —CN; —OH; —NH 2 ; —C 1 -C 3 alkyl optionally substituted with CN, OH, NH 2 or —O—C 1 -C 3 alkyl; —O—C 1 -C 3 alkyl; or —NH—C 1 -C 3 alkyl;

R 9 , if present, is —N(C 0 -C 5 alkylene-H)—, —N(C(O)—(C 0 -C 5 alkylene-H)—, —C(C 0 -C 3 alkylene-H)(C 0 -C 5 alkylene-H)—, or —C(C 0 -C 3 alkylene-H)(C(O)—C 0 -C 5 alkylene-H)—, wherein each alkylene portion of R 9 is optionally substituted with one or more substituent, wherein each substituent is, independently, selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 10 , if present, is C 1 -C 4 alkylene optionally substituted with one or more substituent, wherein each substituent is, independently, selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 11 is —N(C 0 -C 5 alkylene-H)—, —N(C(O)—(C 0 -C 5 alkylene-H)—, —C(C 0 -C 3 alkylene-H)(C 0 -C 5 alkylene-H)—, —C(C 0 -C 3 alkylene-H)(C(O)—C 0 -C 5 alkylene-H)—, or a saturated, nitrogen-containing heterocyclyl, where each alkylene portion of R 11 is optionally substituted with one or more substituent, wherein each substituent is, independently, selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 12 is hydrogen, or —C 1 -C 3 alkyl, or

R 12 is taken together with one R A , the atoms to which they are respectively attached and any intervening atoms to form an optionally substituted, 5-8 membered heterocyclyl that is fused or spiro-fused to ring A, or

R 12 is taken together with any methylene unit in R 10 , or any methylene unit in R 11 , the atoms to which they are respectively attached and any intervening atoms to form an optionally substituted, 5-8 membered heterocyclyl;

each of R 12a and R 12b are independently hydrogen, or —C 1 -C 3 alkyl, or R 12a and R 12b are taken together with the carbon atom to which they are bound to form a 3-6 membered cycloalkyl ring;

R 13 is O, S, N—CN, or N—O—C 1 -C 3 alkyl; and

WH is

each R 14 is independently hydrogen, —CN, or —C 1 -C 3 alkyl optionally substituted with one or more substituents independently selected from —OH, —O—C 1 -C 3 alkyl, —NH 2 , —NH(C 1 -C 3 alkyl), —N(C 1 -C 3 alkyl) 2 , or an optionally substituted 4-7 membered saturated heterocyclyl;

R 15 is —C 1 -C 3 alkyl optionally substituted with one or more substituents independently selected from —OH, —O—C 1 -C 3 alkyl, —NH 2 , —NH(C 1 -C 3 alkyl), —N(C 1 -C 3 alkyl) 2 , or an optionally substituted 4-7 membered saturated heterocyclyl;

R 16 is hydrogen, —C 1 -C 3 alkyl optionally substituted with one or more substituents independently selected from —OH, —O—C 1 -C 3 alkyl, —NH 2 , —NH(C 1 -C 3 alkyl), —N(C 1 -C 3 alkyl) 2 , or an optionally substituted 4-7 membered saturated heterocyclyl; or

R 14 is taken together with either of R 9 or R 11 , the atoms to which they are attached and any intervening atoms to form an optionally substituted 5-8 membered ring system; or

R 11 is taken together with either of R 9 or R 11 , the atoms to which they are attached and any intervening atoms to form an optionally substituted 5-8 membered ring system;

R 3 is hydrogen, halogen, C 1 -C 3 alkyl, or C 1 -C 3 hydroxyalkyl;

R 4 is hydrogen, halogen, or optionally substituted C 1 -C 3 alkyl;

R 5 is hydrogen, halogen, —OH, —CN, —O-(optionally substituted C 1 -C 3 alkyl), optionally substituted C 1 -C 3 alkyl, optionally substituted C 2 -C 6 alkenyl, optionally substituted C 2 -C 6 alkynyl, —(CH 2 ) 0-1 -aryl, —(CH 2 ) 0-1 -heteroaryl, —(CH 2 ) 0-1 -cycloalkyl, or —(CH 2 ) 0-1 -heterocyclyl; or

R 4 and R 5 are taken together to form ═CH 2 , an optionally substituted C 3 -C 6 cycloalkyl, or a 3-7 membered saturated heterocyclyl; or

R 5 is taken together with a ring atom in Q, the carbon atom to which R 4 is bound and X to form a 4-9 membered saturated or unsaturated heterocyclyl that is fused to Q;

R 6 is hydrogen or —CH 3 ;

each R 7 is independently halo, C 1 -C 3 alkyl, C 1 -C 3 haloalkyl, C 1 -C 3 hydroxyalkyl, —OH, —O—C 1 -C 3 alkyl, —O—C 1 -C 3 haloalkyl, —NR n1 R n2 , —NR n1 OR n2 , —ONR n1 R n2 , or —NR n1 NR n2 R n3 ;

R n1 is H, C 1 -C 3 alkyl, C 1 -C 3 heteroalkyl, C 1 -C 3 haloalkyl, —C 1 -C 3 hydroxyalkyl, or C 1 -C 3 aminoalkyl, wherein one methylene unit of R n1 is optionally substituted with

R n2 is H, C 1 -C 3 alkyl, C 1 -C 3 heteroalkyl, C 1 -C 3 haloalkyl, C 1 -C 3 hydroxyalkyl, or C 1 -C 3 aminoalkyl, wherein one methylene unit of R n2 is optionally substituted with

R n3 is H, C 1 -C 3 alkyl, C 1 -C 3 heteroalkyl, C 1 -C 3 haloalkyl, C 1 -C 3 hydroxyalkyl, or C 1 -C 3 aminoalkyl, wherein one methylene unit of R n3 is optionally substituted with

each R 6 is independently halo, C 1 -C 3 alkyl, or C 1 -C 3 haloalkyl;

n is 0, 1, 2, 3, 4, 5, or 6;

p is 0, 1, 2, or 3; and

r is 0, 1, 2, 3, or 4.

2 . The compound of claim 1 , wherein said compound has the structure of formula (Ia):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof,

wherein:

X is a bond, —O—, —CH 2 —, —CH(CH 3 )—, *—CH 2 —O—, or —CH 2 —CH 2 —, wherein “*” represents a portion of X bound to C(R 4 )(R 5 );

Y is —O— or —NH—;

R 1 is —C 1 -C 4 alkyl, —(CH 2 ) 0-1 —(C 3 -C 6 cycloalkyl), or —C 4 -C 6 cycloalkyl;

R 2 is:

wherein:

ring A is a 4-8 membered cycloalkyl or a 4-8 membered saturated heterocyclyl;

each R A is each independently fluoro; chloro; —CN; —OH; —NH 2 ; —C 1 -C 3 alkyl optionally substituted with CN, OH, NH 2 or —O—C 1 -C 3 alkyl; —O—C 1 -C 3 alkyl; or —NH—C 1 -C 3 alkyl;

n is 0, 1, 2, 3, 4, 5, or 6;

R 9 , if present, is —N(C 0 -C 5 alkylene-H)—, —N(C(O)—(C 0 -C 5 alkylene-H)—, —C(C 0 -C 3 alkylene-H)(C 0 -C 5 alkylene-H)—, or —C(C 0 -C 3 alkylene-H)(C(O)—C 0 -C 5 alkylene-H)—, wherein each alkylene portion of R 9 is optionally substituted with one or more substituent independently selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 10 , if present, is C 1 -C 4 alkylene optionally substituted with one or more substituent independently selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 11 is —N(C 0 -C 5 alkylene-H)—, —N(C(O)—(C 0 -C 5 alkylene-H)—, —C(C 0 -C 3 alkylene-H)(C 0 -C 5 alkylene-H)—, or —C(C 0 -C 3 alkylene-H)(C(O)—C 0 -C 5 alkylene-H)—, wherein each alkylene portion of R 11 is optionally substituted with one or more substituent independently selected from halo, —CN, —OH, —C 1 -C 3 alkyl, and —O—C 1 -C 3 alkyl;

R 12 is hydrogen, or —C 1 -C 3 alkyl, or

R 12 is taken together with one R A , the atoms to which they are respectively attached and any intervening atoms to form an optionally substituted, 5-8 membered heterocyclyl that is fused to ring A, or

R 12 is taken together with any methylene unit in R 10 , or any methylene unit in R 11 , the atoms to which they are respectively attached and any intervening atoms to form an optionally substituted, 5-8 membered heterocyclyl;

WH is

each R 14 is independently hydrogen, —CN, —C 1 -C 3 alkyl, —C 1 -C 3 hydroxyalkyl, —O—C 1 -C 3 alkyl;

R 15 is —C 1 -C 3 alkyl, —C 1 -C 3 hydroxyalkyl, or —C 1 -C 3 alkylene-O—C 1 -C 3 alkyl;

R 16 is hydrogen, —C 1 -C 3 alkyl, —C 1 -C 3 hydroxyalkyl, or C 1 -C 3 alkylene-O—C 1 -C 3 alkyl; or

R 14 is taken together with either of R 9 or R 11 , the atoms to which they are attached and any intervening atoms to form an optionally substituted 5-8 membered ring system, or

R 16 is taken together with either of R 9 or R 11 , the atoms to which they are attached and any intervening atoms to form an optionally substituted 5-8 membered ring system;

R 4 is hydrogen, halo, or C 1 -C 3 alkyl;

R 5 is hydrogen, halo, —OH, C 1 -C 3 alkyl, C 1 -C 3 hydroxyalkyl, C 1 -C 3 alkylene-O—C 1 -C 3 alkyl, C 1 -C 3 haloalkyl, —(CH 2 ) 0-1 —C 3 -C 6 cycloalkyl, C 1 -C 3 cyanoalkyl, or —(CH 2 ) 0-1 -aryl (benzyl), or

R 4 and R 5 are taken together to form ═CH 2 , or a C 3 -C 6 cycloalkyl, or

R 5 is taken together with a ring atom of Q, the carbon atom to which it is bound and X to form a 5-7 membered saturated heterocyclyl;

R 7 is —OH, —NH 2 , or C 1 -C 3 haloalkyl;

Q is a bicyclic arylene, a bicyclic heteroarylene, or a bicyclic heterocyclylene, wherein:

a first ring in Q is bonded to X, and a second ring in Q is bonded Z; and

Q is optionally substituted with one or more independently selected substituents selected from ═O; —CN; —C 1 -C 5 alkyl optionally substituted with one or more independently selected halo, CN, OH, —O—(C 1 -C 3 alkyl), —C(O)—(C 1 -C 3 alkyl), —O—(C 2 -C 3 alkynyl), —(C 3 -C 6 cycloalkyl), or a 4-7 membered saturated heterocyclyl; —O—(C 1 -C 3 alkyl) optionally substituted with one or more independently selected halo; C 2 -C 5 alkenyl optionally substituted with one or more independently selected —CN, or —OH; C 2 -C 3 alkynyl; —S(O) 2 —C 1 -C 3 alkyl; —(CH 2 ) 0-1 —C 3 -C 6 cycloalkyl optionally substituted with one or more independently selected halo, ═O, —CN, C 1 -C 3 alkyl optionally substituted with —CN or —O—C 1 -C 3 alkyl, —C(O)-saturated heterocyclyl, —O-saturated heterocyclyl, O-cycloalkyl, or —O-aryl; —(CH 2 ) 0-1 -heteroaryl optionally substituted with one or more independently selected halo, —CN, C 1 -C 3 alkyl optionally substituted with —CN or —O—C 1 -C 3 alkyl, —C(O)-saturated heterocyclyl, —O-saturated heterocyclyl, O-cycloalkyl, or —O-aryl; —(CH 2 ) 0-1 -heterocyclyl optionally substituted with one or more independently selected halo, ═O, —CN, C 1 -C 3 alkyl optionally substituted with —CN or —O—C 1 -C 3 alkyl, —C(O)-saturated heterocyclyl, —O-saturated heterocyclyl, O-cycloalkyl, or —O-aryl; —(CH 2 ) 0-1 -aryl optionally substituted with one or more independently selected halo, —CN, —C 1 -C 3 alkyl optionally substituted with —CN or —O—C 1 -C 3 alkyl, —C(O)-saturated heterocyclyl, —O-saturated heterocyclyl, O-cycloalkyl, or —O-aryl; —C(O)—NH—(C 1 -C 3 alkyl); —C(O)—N(C 1 -C 3 alkyl) 2 ; C 2 -C 3 alkenylene ═N—O—(C 1 -C 3 alkyl) optionally substituted with C 3 -C 6 cycloalkyl; or

two substituents on the same or adjacent ring atoms of Q are taken together to form a 5-7 membered monocyclic ring or a 6-12 membered bicyclic ring optionally substituted with one or more independently selected halo, ═O, —CN, C 1 -C 3 alkyl, or —O—C 1 -C 3 alkyl; and fused to Q.

3 . The compound of claim 2 , wherein said compound has the structure of formula (Ib):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof or

said compound has the structure of formula (Ic):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

4 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is a 5,6 bicyclic heteroarylene, a 5,6 bicyclic heterocyclylene, a 6,6 bicyclic heteroarylene, or a 6,6 bicyclic heterocyclylene; and wherein Q is optionally substituted.

5 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is selected from the group consisting of:

wherein:

each of V 1 , V 2 , V 3 and V 4 is independently C, CH, or N;

R Q1 is —S(O) 2 —R Q11 , —C(O)—R Q11 , —S(O) 2 —N(R Q11 )R Q12 , —C(O)—N(R Q11 )R Q12 , C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein the alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl are optionally substituted; or

R Q1 is taken together with the nitrogen atom to which it is attached and an adjacent ring atom to form an optionally substituted 4-8 membered ring, which is optionally further fused to a 5-6 membered ring;

each of R Q11 and R Q12 is independently C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein each of R Q11 and R Q12 is optionally substituted; or

R Q11 and R Q12 are taken together with the nitrogen atom to which they are both attached to form an optionally substituted 4-8 membered ring, wherein the ring formed by taking R Q11 and R Q12 together is optionally fused to another 5-6 membered ring.

6 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is selected from the group consisting of:

wherein:

each of V 1 , V 2 , V 3 and V 4 is independently C, CH, N, C(F), C(CH 3 ), C(OH), C(OCH 3 ), or C(CN);

each of V 5 , V 6 , and V 7 is independently, C(R 17a )(R 17b ), or C(═O), wherein each of R 17a and R 17b is independently selected from hydrogen, halo, —C 1 -C 3 alkyl, C 1 -C 3 haloalkyl, —O—C 1 -C 3 alkyl, —O—C 1 -C 3 haloalkyl, and no more than two of V 5 , V 6 , and V 7 is C(═O);

R NQ1 is hydrogen, optionally

substituted —S(O) 2 —R Q11 , —C(O)—R Q11 , —S(O) 2 —N(R Q11 )R Q12 , —C(O)—N(R Q11 )R Q12 , C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein the alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl are optionally substituted;

each R Q2 is independently hydrogen, CN, optionally

substituted —S(O) 2 —R Q11 , —C(O)—R Q11 , —S(O) 2 —N(R Q11 )R Q12 , —C(O)—N(R Q11 )R Q12 , C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein the alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl are optionally substituted; or

R NQ1 and one R Q2 are taken together with the atoms to which they are bound to form an optionally

substituted 4-8 membered ring, wherein the ring formed by taking R NQ1 and one R Q2 together is optionally further fused to a 5-6 membered ring;

each R Q3 is independently hydrogen, CN, optionally

substituted —S(O) 2 —R Q11 , —C(O)—R Q11 , —S(O) 2 —N(R Q11 )R Q12 , —C(O)—N(R Q11 )R Q12 , C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein the alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl are optionally substituted, or

two R Q3 bound to the same atom are taken together to form ═CH, ═O, ═S, or ═NR V4 ; or

two R Q3 bound to the same atom are taken together with the atom to which they are bound to form an optionally substituted 4-8 membered ring, wherein the ring formed by taking each R Q3 together is optionally further fused to a 5-6 membered ring; or

R NQ1 and one R Q3 are taken together with the atoms to which they are bound to form an optionally substituted 4-8 membered ring, wherein the ring formed by taking R NQ1 and R Q3 together is optionally further fused to a 5-6 membered ring;

each of R Q11 and R Q12 is independently C 1 -C 10 alkyl, C 3 -C 10 cycloalkyl, a 4-14 membered heterocyclyl, aryl, or heteroaryl, wherein each of R Q11 and R Q12 is optionally substituted; or

R Q11 and R Q12 are taken together with the atoms to which they are attached to form an optionally substituted 4-8 membered ring, wherein the ring formed by taking R Q11 and R Q12 together is optionally fused to another 5-6 membered ring; and

“*” represents a portion of Q that is bound to ring Z.

7 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is selected from the group consisting of:

8 . The compound of claim 7 , wherein said compound has the structure of formula (Id):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof or

said compound has the structure of formula (Ij):

a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

9 . The compound of claim 1 , wherein said compound has the structure of formula (IL):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein R 18 is Br or Cl or

said compound has the structure of formula (Im):

or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein each R 14 is H.

10 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is selected from the group consisting of:

wherein:

“1” indicates a portion of Q bound to X; and

Q is further optionally substituted.

11 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein Q is selected from the group consisting of:

wherein:

R is —CH 2 CH 3 ,

—CH 2 CH 2 —OCH 3 , —CH 2 CHF 2 , —CH 2 —CN, —C(CH 3 ) 2 —CN, —C(CH 3 ) 2 —CH 2 CN, —CH 2 CH 2 —CN, cyclohexyl, cyclobutyl, cyclopropyl, pyridin-4-yl, tetrahydropyran-4-yl, tetrahydropyran-4-ylmethyl, oxetan-3-ylmethyl, 2-cyano-5-methoxyphenyl, 2-cyano-5-methoxymethylphenyl, 2-cyano-6-(methoxymethyl)phenyl, 2-cyano-6-bromophenyl, 2-methoxyethan-1-yl, 2-cyanopropan-2-yl, 2-tetrahydropyran-4-ylethan-1-yl, 3-cyanopentan-3-yl, or 2-cyano-4-methoxybut an-2-yl, or

R is

R 23 is hydrogen or fluoro;

R 24 is hydrogen,

chloro, —CN, —CH 3 , —CH 2 CH 3 , —CHF 2 , —CF 3 , —CH 2 —CN, —CH(CN)—CH 3 , —C(CH 3 ) 2 —CN, —C(CH 2 CH 3 ) 2 —CN, —CH 2 —CH 2 —CN, —C(CH 3 )═N—O—CH(CH 3 ) 2 , —C(CH 3 )═N—O—CH 3 , —C(O)—N(CH 3 ) 2 , —C(O)—NH—CH 3 , —OCH 3 , —CH 2 —O—CH 3 , —C≡CH, —C≡C—CH 3 , —S(O) 2 CH 3 , 1-(cyclopentyl)-1-cyanoethan-1-yl, 1-(tetrahydropyran-4-yl)-1-cyanoethan-1-yl, 1-(tetrahydrofuran-3-yl)-1-cyanoethan-1-yl, 1,3-dimethoxy-2-cyanopropan-2-yl, 1,4-dimethylpyrazol-5-yl, 1-cyanocyclobutyl, 1-cyanocyclopropyl, 1-cyanocylopentyl, 1-methyl-1,2,3,6-tetrahydropyridin-4-yl, 1-methylpyrazol-3-yl, 1-methylpyrazol-4-ylcyanomethyl, 1-methylpiperidin-4-yl, 1-methylpyrazol-5-yl, 1-oxoindolin-5-yl, 1-oxoisoindolin-4-yl, 1-oxoisoindolin-6-yl, 2-(2-methoxyethan-1-yl)phenyl, 2-(methoxymethyl)phenyl, 2-(tetrahydropyran-4-yloxy)phenyl, 2,2-difluoro-benzo[d][1,3]dioxol-4-yl, 2,3-dicyanopropan-2-yl, 2-chiorophenyl, 2-cyano-3-(tetrahydropyran-4-yl)propan-2-yl, 2-cyano-3-chlorophenyl, 2-cyano-3-fluorophenyl, 2-cyano-3-methoxyphenyl, 2-cyano-4-fluorophenyl, 2-cyano-4-chlorophenyl, 2-cyano-5-chlorophenyl, 2-cyano-5-fluorophenyl, 2-cyano-5-methoxyphenyl, 2-cyano-6-chlorophenyl, 2-cyano-6-fluorophenyl, 2-cyano-6-(tetrahydropyran-4-yloxy)phenyl, 2-cyanomethylphenyl, 2-cyanophenyl, 2-cyanopropan-2-yl, 2-cyclopentylphenyl, 2-difluoromethoxyphenyl, 2-fluorophenyl, 2-methoxy-6-cyanophenyl, 2-methoxyphenyl, 2-methoxycarbonylphenyl, 2-nitrophenyl, 2-oxopyrrolidin-1-yl, 2-phenoxyphenyl, 3-(1,1-dioxothiomorpholin-4-ylmethyl)phenyl, 3-(2-methoxyethan-1-yl)phenyl, 3,5-difluoro-4-(pyrrolidin-1-ylcarbonyl)phenyl, 3-cyano-2-methylpropan-2-yl, 3-cyanomethylphenyl, 3-cyanopentan-3-yl, 3-cyanophenyl, 3-hydroxy-2-methylbutan-2-yl, 3-hydroxy-3-methyl-but-1-yne-1-yl, 3-methoxy-2-methylbutan-2-yl, 3-methoxymethyl-5-methylisoxazol-4-yl, 3-methoxyphenyl, 3-methoxycarbonylphenyl, 3-oxo-2-methylbutan-2-yl, 4-cyanophenyl, 4-cyanotetrahydropyran-4-yl, 4-methoxyphenyl, benzo[d][1,3]dioxol-4-yl, benzo[d]oxazol-7-yl, benzo[d]thiazol-2-yl, benzo[d]thiazol-4-yl, benzo[d]thiazol-5-yl, benzo[d]thiazol-6-yl, benzo[d]thiazol-7-yl, cyclobutyl, cyclopropyl, cyclopropylcyanomethyl, N-methoxycyclopropanecarbimidoyl, phenyl, pyridin-2-ylmethyl, pyridin-3-yl, pyridin-3-ylmethyl, pyridin-4-ylmethyl, tetrahydrofuran-3-ylmethyl, tetrahydrofuran-3-ylcyanomethyl, tetrahydropyran-4-yl, or tetrahydropyran-4-ylcyanomethyl;

R 27 is hydrogen, —CH 3 , —CHF 2 , —CH 2 CH 3 , —CH 2 —O—CH 3 ,

CH 2 CN, —CN, —CH 2 —O—CH 2 —CN, —C(O)—N(CH 3 ) 2 , —C(O)—NH—CH 3 , —CH 2 —O—CH 2 —C≡CH, 2-methoxyphenyl, 3-methoxyphenyl, 2,2-difluorobenzo[d][1,3]dioxol-4-yl, 2-cyanophenyl, 3-cyanophenyl, phenyl, 2-benzyl methyl ether, 2-(2-methoxyethyl) benzene, 2-(2-difluoromethoxymethyl)benzene, 2-(2-dimethylmethoxyethyl)benzene, pyridin-3-yl, pyridin-2-yl, pyridin-3-ylmethyl, or tetrahydropyridin-4-yl, or

R 24 and R 27 are taken together to form 4-cyanobenzene-1,2-diyl, 3-cyanobenzene-1,2-diyl, 5-methyl-5-cyanotetrahydropyran-3,4-diyl, 3-cyanocyclohexan-1,2-diyl, 3-methoxybenzene-1,2-diyl, benzene-1,2-diyl, 3-oxocyclohexyl-1,2-diyl, 3-cyanocyclopentan-1,2-diyl, or pyridin-3,4-diyl;

R 28 is hydrogen, —CH 3 , or —CH 2 —O—CH 3 ; and

R 29 is hydrogen, acetyl,

CN, —CH 2 —CN, —CH 2 —CH 2 —CN, —CH 2 —O—CH 3 , —CH═CH—CN, —CH 2 —O—C(O)—N(CH 3 ) 2 , morpholin-4-ylmethyl, pyrazol-1-ylmethyl, pyridin-3-yl, pyridin-3-ylethynyl, pyridin-2-yloxymethyl, or 2-cyanopropan-2-yl, or

R 28 and R 29 are taken together to form 2,3-dihydrobenzofuran-3,3-diyl, 2,3-dihydrofuro[2,3-b]pyridin-3,3-diyl, tetrahydropyran-3,3-diyl, 6,7-dihydro-5H-cyclopenta[c]pyridin-6-yl, tetrahydropyran-4,4-diyl, or 4-methoxycyclohexane.

12 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein R 1

is —CH 3 , —CH 2 CH 3 , —(CH 2 ) 2 CH 3 , —CH(CH 3 ) 2 , —CH(CH 3 )CH 2 CH 3 , cyclopropylmethyl, cyclobutylmethyl, cyclopentylmethyl, cyclohexylmethyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, phenyl, 4-methoxybenzyl, or tetrahydropyran-4-yl.

13 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein R 9 is absent and ring A is a saturated, nitrogen-containing heterocyclyl.

14 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein the portion of R 2 represented by:

is selected from the group consisting of:

wherein each ring system in R 2 is optionally substituted with up to 4 substituents independently selected from fluoro;

chloro; —CN; —OH; —NH 2 ; —C 1 -C 3 alkyl optionally substituted with CN, OH, NH 2 or —O—C 1 -C 3 alkyl; —O—C 1 -C 3 alkyl; and —NH—C 1 -C 3 alkyl.

15 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein:

the portion of R 2 represented by WH is —C(O)—C≡C—CH 3 , —C(O)—CH═CH 2 , —S(O) 2 —CH═CH 2 , —C(O)—CH 2 Cl, —C(O)—CH(CH 3 )Cl, or —C(O)—CH(Cl)—CH 2 —O—CH 3 , or

the portion of R 2 represented by —R 11 —WH, when R 11 is taken together with one R 14 is

16 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein R 2 is selected from the group consisting of: 1-(2-chloro-3-methoxypropanoyl)azetidin-3-yl-N-methylcarboxamido, 1-(2-chloroacetyl)azetidin-3-ylcarboxamido, 1-(2-chloroacetyl)azetidin-3-yl-N-ethylcarboxamido, 1-(2-chloroacetyl)azetidin-3-yl-N-methylcarboxamido, 1-(2-chloroacetyl) piperidin-3-yl-N-methylcarboxamido, 1-(2-chloroacetyl)piperidin-4-yl-N-methylcarboxamido, 1-(2-chloroacetyl) pyrrolidin-3-yl-N-methylcarboxamido, 1-(2-chloropropanoyl)-piperidin-4-yl-N-methylcarboxamido 1-(2-chloropropanoyl)-3-fluoroazetidin-3-yl-N-methylcarboxamido 1-(2-chloropropanoyl)azetidin-3-yl-N-methylcarboxamido, 1-(2-chloropropanoyl)pyrolidin-3-yl-N-methylcarboxamido, 1-(but-2-ynoyl)-4-fluoropiperidin-4-ylcarbonylmethylamino, 1-(but-2-ynoyl))azetidin-2-yl-N-methylcarboxamido, 1-(but-2-ynoyl)azetidin-3-yl-N-methylcarboxamido, 1-(but-2-ynoyl)-piperidin-3-ylcarbonylmethylamino, 1-(but-2-ynoyl-piperidin-4-ylcarbonylmethylamino, 1-(but-2-ynoyl)pyrrolidin-2-ylcarbonyl-N-methylamino 1-(but-2-ynoyl)pyrrolidin-3-ylcarbonyl-N-methylamino 1-acryloyl-2-oxo-imidazolidin-3-yl, 1-acryloyl-3-fluoroazetidin-3-yl-N-methylcarboxamido, 1-acryloyl-3-fluoropyrrolidin-3-yl-N-methylcarboxamido, 1-acryloyl-4-fluoropiperidin-4-ylcarbonylmethylamino 1-acryloylazetidin-2-yl-N-methylcarboxamido, 1-acryloylazetidin-3-yl-N-methylcarboxamido, 1-acryloyl-piperidin-3-ylcarbonylmethylamino, 1-acryloyl-piperidin-4-ylcarbonylmethylamino, 1-acryloylpyrrolidin-2-yl-N-methylcarboxamido, 1-acryloylpyrrolidin-3-yl-N-methylcarboxamido, 1-oxo-7-(2-chloroacetyl)-2,7-diazaspiro[4.3]octan-2-yl, 1-oxo-7-(2-chloroacetyl)-2,7-diazaspiro[4.4]nonan-2-yl, 1-oxo-2-(2-chloroacetyl)-2,7-diazaspiro[4.5]decan-7-yl, 1-oxo-7-(2-chloroacetyl)-2,7-diazaspiro[4.5]decan-2-yl, 1-oxo-7-(2-chloropropanoyl)-2,7-diazaspiro[4.3]octan-2-yl, 1-oxo-7-(but-2-ynoyl)-2,7-diazaspiro[4.4]nonan-2-yl, 1-oxo-7-acryloyl-2,7-diazaspiro[4.3]octan-2-yl, 1-oxo-7-acryloyl-2,7-diazaspiro[4.4]nonan-2-yl, 1-oxo-7-acryloyl-2,7-diazaspiro[4.5]decan-2-yl, 1-oxo-8-(2-chloroacetyl)-2,8-diazaspiro[4.5]decan-2-yl, 1-oxo-8-(but-2-ynoyl)-2,8-diazaspiro[4.5]decan-2-yl, 1-oxo-8-acryloyl-2,8-diazaspiro[4.5]decan-2-yl, 1-vinylsulfonyl-2-oxoimidazolidin-3-yl, 1-vinylsulfonylazetidin-3-N-methylcarboxamido, 2-(1-acryloylpiperidin-4-yl)-N-methylacetamido, 2-(but-2-ynoyl)-5-oxo-2,6-diazaspiro[3.4]octan-1-yl, 2,5-dioxo-3,4-dimethyl-2,5-dihydropyrrol-1-yl-N-methylacetamido, 2-acryloyl-2-azabicyclo[2.1.1]hexan-4-yl-N-methylcarboxamido, 2-chloroacetamidomethyl-N-methylcarboxamido, 2-oxo-2,5-dihydro-1H-pyrrol-1-yl-N-methylacetamido, 2-oxo-3-(2-chloroacetamido)pyrrolidin-1-yl, 2-oxo-3-(N-methyl-2-chloroacetamido)pyrrolidin-1-yl, 2-oxo-3-(N-methylacrylamido)pyrrolidin-1-yl, 2-oxo-3-acrylamidopyrrolidin-1-yl, 2-oxo-4-(2-chloroacetyl)piperazin-1-yl, 2-oxo-4-acryloylpiperazin-1-yl, 2-oxo-4-vinylsulfonylpiperazin-1-yl, 2-oxocyclopent-3-en-1-yl-N-methylacetamido, 3-(4-(dimethylamino)but-2-enamido)phenyl-N-methylcarboxamido, 4-(but-2-ynoyl)-piperazin-1-yl-N-methylcarboxamido, 4-acryloylpiperazin-1-yl-N-methylcarboxamido, 6-oxo-2-(2-chloroacetyl)-2,7-diazaspiro[4.5]decan-7-yl, and 6-oxo-2-acryloyl-2,7-diazaspiro[4.5]decan-7-y.

17 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein:

R 4 is hydrogen, fluoro, or —CH 3 ; and

R 5 is hydrogen, fluoro,

chloro, —OH, —CH 3 , —CH 2 CH 3 , —CH(CH 3 ) 2 , —CH 2 OH, —CH 2 OCH 3 , —CH 2 F, —CHF 2 , CH 2 CN, —CH 2 -cyclopropyl, cyclopropyl, pyridyl, phenyl, or —CH 2 -phenyl, wherein any phenyl portion of R 5 is optionally substituted with up to 4 substituents independently selected from halo, —CN, and —O—C 1 -C 3 alkyl: or

R 4 and R 5 are taken together to form ═CH 2 or cyclopropyl, or cyclobutyl, or cyclopentyl, or cyclohexyl; or

R 5 is taken together with the carbon atom to which it is bound, a ring atom of Q, and X to form oxazepane.

18 . The compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, wherein R 7 is —OH, —NH 2 , or —CHF 2 .

19 . A compound, or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, selected from FIG. 1 .

20 . A pharmaceutical composition comprising a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, and a pharmaceutically acceptable carrier.

21 . A complex comprising a presenter protein, a RAS protein, and a compound of claim 1 , or a pharmaceutically acceptable salt thereof.

22 . A method of producing a complex, the method comprising contacting a presenter protein and a KRAS G12C protein with a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof, under conditions suitable to permit complex formation.

23 . A method of treating cancer in a subject in need thereof, the method comprising administering to the subject an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

24 . A method of inhibiting a KRAS G12C protein in a cell, the method comprising contacting the cell with an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

25 . A method of treating a KRAS G12C protein-related disorder in a subject in need thereof, the method comprising administering to the subject an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

26 . A method of inhibiting RAF-RAS binding in a cell, the method comprising contacting the cell with an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, an enantiomer, a stereoisomer, or a tautomer thereof.

27 . The method of claim 23 , wherein the method or use further comprises administering an additional therapeutic agent.

28 . The method of claim 27 , wherein the additional therapeutic agent is a HER2 inhibitor, an EGFR inhibitor, a second Ras inhibitor, a SHP2 inhibitor, a SOS1 inhibitor, a Raf inhibitor, a MEK inhibitor, an ERK inhibitor, a PI3K inhibitor, a PTEN inhibitor, an AKT inhibitor, an mTORC1 inhibitor, a BRAF inhibitor, a PD-L1 inhibitor, a PD-1 inhibitor, a CDK 4/6 inhibitor, or a combination thereof.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 21, 2021
From: WARP DRIVE BIO, INC.
To: REVOLUTION MEDICINES, INC.
Reel/Frame 054988/0771 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 19, 2021
From: KOHLMANN, ANNA
To: WARP DRIVE BIO, INC.
Reel/Frame 055026/0710 →
CORRECTIVE ASSIGNMENT TO CORRECT THE INCORRECT ASSIGNEE FOR INVENTORS JIN, PERL, YIN, LOWE, AHN, AND MULVIHILL ON THE PREVIOUSLY RECORDED ASSIGNMENT PREVIOUSLY RECORDED AT REEL: 054152 FRAME: 0739. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Nov 24, 2020
From: JIN, MEIZHONG; PERL, NICHOLAS; YIN, NING; LOWE, JASON T.; AHN, JAE YOUNG; MULVIHILL, MARK JOSEPH
To: WARP DRIVE BIO, INC.
Reel/Frame 054511/0948 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 23, 2020
From: JIN, MEIZHONG; PERL, NICHOLAS; YIN, NING; LOWE, JASON T.; AHN, JAE YOUNG; MULVIHILL, MARK JOSEPH; KOLTUN, ELENA S.; GILL, ADRIAN L.
To: REVOLUTION MEDICINES, INC.
Reel/Frame 054152/0739 →