Of herbicide tolerance to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitors by down-regulation of HPPD expression in soybean
A method for conferring tolerance to a 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide in a plant includes reducing expression of at least one HPPD enzyme in the plant.
1. A method for conferring tolerance to a 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide in a plant, comprising reducing expression of at least one endogenous HPPD enzyme in the plant, wherein the method further comprises expressing a mutant HPPD enzyme, wherein the mutant HPPD enzyme is less sensitive to HPPD inhibitors than the corresponding native HPPD enzyme before mutation.
2. The method according to claim 1 , wherein the mutant HPPD enzyme has the amino acid sequence of SEQ ID NO: 1 with the following amino acid substitutions:
(a) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1 and a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1;
(b) a serine at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a serine at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, a threonine at the amino acid position corresponding to amino acid position 339 of SEQ ID NO:1, and a glutamine at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1;
(c) a tryptophan at the amino acid position corresponding to amino acid position 188 of SEQ ID NO:1 and a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1;
(d) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a serine at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, and a glutamic acid at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1; or
(e) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, an alanine at the amino acid position corresponding to amino acid position 339 of SEQ ID NO:1, and a glutamine at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1.
3. The method according to claim 2 , wherein the mutant HPPD enzyme has the amino acid sequence of SEQ ID NO: 16.
4. The method according to claim 1 , wherein the expression of at least one HPPD enzyme in the plant is reduced by silencing one or more endogenous HPPD genes in the plant.
5. The method according to claim 1 , wherein the plant is selected from the group consisting of: maize, sorghum, wheat, sunflower, tomato, crucifers, peppers, potato, cotton, rice, soybean, sugarbeet, sugarcane, tobacco, barley, and oilseed rape.
6. The method according to claim 1 , wherein the plant is soybean.
7. The method according to claim 6 , wherein the HPPD enzyme is encoded by a nucleic acid having the nucleotide sequence of SEQ ID NO: 89 and/or SEQ ID NO: 90.
8. The method according to claim 6 , wherein the method comprises:
(a) transforming a soybean cell with a DNA construct comprising a RNAi region for inhibiting the expression of one or more endogenous HPPD genes; and
(b) regenerating a transgenic soybean plant from said transformed soybean cell.
9. The method according to claim 8 , wherein the DNA construct comprising a RNAi region for inhibiting the expression of one or more endogenous HPPD genes further comprises a coding region that encodes a mutant HPPD enzyme, wherein the mutant HPPD enzyme mutant is less sensitive to HPPD inhibitors than the native HPPD enzyme before mutation.
10. The method according to claim 9 , wherein the mutant HPPD enzyme has the amino acid sequence of SEQ ID NO:1 with the following amino acid substitutions:
(a) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1 and a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1;
(b) a serine at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a serine at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, a threonine at the amino acid position corresponding to amino acid position 339 of SEQ ID NO:1, and a glutamine at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1;
(c) a tryptophan at the amino acid position corresponding to amino acid position 188 of SEQ ID NO:1 and a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1;
(d) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a serine at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, and a glutamic acid at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1; or
(e) a proline at the amino acid position corresponding to amino acid position 335 of SEQ ID NO:1, a tryptophan at the amino acid position corresponding to amino acid position 336 of SEQ ID NO:1, an alanine at the amino acid position corresponding to amino acid position 339 of SEQ ID NO:1, and a glutamine at the amino acid position corresponding to amino acid position 340 of SEQ ID NO:1.
11. The method according to claim 9 , wherein the coding region encodes the amino acid sequence set forth in any of SEQ ID NOs: 3-59 or fragments thereof.
12. The method according to claim 9 , wherein the coding region encodes the amino acid sequence set forth in SEQ ID NO: 16 or fragments thereof.
13. The method according to claim 9 , wherein the coding region is a synthetic sequence that has been designed for expression in soybean.
14. A transgenic soybean plant produced by the method of claim 8 .