IP Library Granted Patent US 11,529,350
Granted Patent B2
US 11,529,350 · App. 16/919,853 · Granted Dec 20, 2022

Tyrosine kinase non-receptor 1 (TNK1) inhibitors and uses thereof

Inventors: Adam Siddiqui-Jain (South Jordan, UT); Jeyaprakashnarayanan Seenisamy (Bangalore, IN); Steven L. Warner (Sandy, UT); Clifford J. Whatcott (West Jordan, UT); David J. Bearss (Alpine, UT)
Assignee: Sumitomo Pharma Oncology, Inc.
A61K31/506A61K31/415A61K31/69C07D401/14
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Quick Facts
Patent No.
US 11,529,350
App. No.
16/919,853
Granted
Dec 20, 2022
Kind
B2
Abstract

Provided herein is a compound of Formula I: or a pharmaceutically acceptable salt thereof, wherein values for the variables (e.g., X 1 , X 2 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , m, n) are as described herein. Compounds of Formula I, pharmaceutically acceptable salts thereof, pharmaceutical compositions of either of the foregoing, and combinations of any of the foregoing can be used to treat tyrosine kinase non-receptor 1 (TNK1)-mediated diseases, disorders and conditions.

Claims (162)

1. A compound represented by the following structural formula:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is —N— and X 2 is —C(R 9 )—, or X 1 is —C(R 9 )— and X 2 is —N—;

R 9 is —H, halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 20 R 21 or —NR 20 R 21 ;

R 20 and R 21 are each independently —H or (C 1 -C 6 )alkyl;

R 1 is halo, —CN, —C(O)NR 10 R 11 , —C(O)(C 1 -C 6 )alkyl, —OR 12 or —NR 10 R 11 ;

R 10 and R 11 are each independently —H or (C 1 -C 6 )alkyl;

R 12 is —H or (C 1 -C 6 )alkyl;

R 2 is —NR 13 R 14 ;

R 13 and R 14 are each independently —H or (C 1 -C 6 )alkyl, or taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl optionally substituted with one or more R 30 ;

R 30 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 3 is —H, halo, cyano or (C 1 -C 6 )alkyl;

R 4 is —H, (C 1 -C 6 )alkyl, hydroxy(C 1 -C 6 )alkyl or —C(O)(C 1 -C 6 )alkyl;

R 5 is —H; and

R 6 is —H, halo, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy or (C 3 -C 7 )cycloalkoxy; or

R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl or (C 5 -C 6 )heteroaryl optionally substituted with one or more R 40 , or (C 5 -C 8 )carbocyclyl or (C 5 -C 8 )heterocyclyl optionally substituted with one or more R 50 ;

R 40 , for each occurrence, is optionally and independently halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 50 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 7 is halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 17 R 18 or —NR 17 R 18 ;

R 17 and R 18 are each independently —H or (C 1 -C 6 )alkyl;

R 8 , for each occurrence, is independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

m is 0 or 1, provided that if R 9 is halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy, m is 0; and

n is 0, 1 or 2.

2. The compound of claim 1 , wherein X 1 is —N— and X 2 is —C(R 9 )—.

3. The compound of claim 1 , wherein X 1 is —C(R 9 )— and X 2 is —N—.

4. The compound of claim 1 , wherein R 9 is —H.

5. The compound of claim 1 , wherein R 20 and R 21 are each —H.

6. The compound of claim 1 , wherein R 1 is halo or —CN.

7. The compound of claim 6 , wherein R 1 is chloro, bromo or —CN.

8. The compound of claim 7 , wherein R 1 is chloro.

9. The compound of claim 1 , wherein R 13 and R 14 are each independently selected from (C 1 -C 6 )alkyl.

10. The compound of claim 1 , wherein R 13 and R 14 , taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl optionally substituted with one or more R 30 .

11. The compound of claim 10 , wherein R 13 and R 14 , taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl substituted with one oxo and optionally substituted with one or more R 30 .

12. The compound of claim 1 , wherein R 13 and R 14 , taken together with the N to which they are attached, form a piperidinone, pyrrolidinone or imidazolidinone optionally substituted with one or more R 30 .

13. The compound of claim 1 , wherein R 30 , for each occurrence, is optionally and independently, halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy.

14. The compound of claim 1 , wherein R 2 is —N(CH 3 ) 2 , 1-piperidinyl-2-one, 1-pyrrolidinyl-2-one, 1-imidazolidinyl-2-one, 1-pyrrolidinyl or 1-piperidinyl.

15. The compound of claim 1 , wherein R 3 is halo, cyano or (C 1 -C 6 )alkyl.

16. The compound of claim 15 , wherein R 3 is chloro or methyl.

17. The compound of claim 1 , wherein R 3 is —H, halo or (C 1 -C 6 )alkyl.

18. The compound of claim 17 , wherein R 3 is —H, chloro or methyl.

19. The compound of claim 1 , wherein R 4 is —H, —CH 3 , 2-hydroxyethyl or —C(O)CH 3 .

20. The compound of claim 19 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

21. The compound of claim 1 , wherein R 5 is —H, and R 6 is halo, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy or (C 3 -C 7 )cycloalkoxy.

22. The compound of claim 21 , wherein R 6 is (C 1 -C 6 )alkoxy or (C 3 -C 7 )cycloalkoxy.

23. The compound of claim 22 , wherein R 6 is methoxy, ethoxy or isopropyloxy.

24. The compound of claim 23 , wherein R 6 is methoxy.

25. The compound of claim 1 , wherein R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl or (C 5 -C 6 )heteroaryl optionally substituted with one or more R 40 , or (C 5 -C 8 )carbocyclyl or (C 5 -C 8 )heterocyclyl optionally substituted with one or more R 50 .

26. The compound of claim 25 , wherein R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl.

27. The compound of claim 1 , wherein R 7 is halo, cyano, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy.

28. The compound of claim 1 , wherein R 17 and R 18 are each —H.

29. The compound of claim 1 , wherein R 9 is —H, and m is 1.

30. The compound of claim 1 , wherein m is 0.

31. The compound of claim 1 , wherein R 8 , for each occurrence, is independently halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy.

32. The compound of claim 1 , wherein n is 0.

33. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

34. The compound of claim 33 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

35. The compound of claim 33 , wherein R 4 is —CH 3 .

36. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

37. The compound of claim 36 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

38. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

39. The compound of claim 38 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

40. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof, wherein:

Z is —N(R 60 )— or —C(R 60 ) 2 —;

R 30 , for each occurrence, is independently halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 60 , for each occurrence, is independently hydrogen, halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy; and

p is 0, 1, 2, 3, 4 or 5.

41. The compound of claim 40 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

42. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

43. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

44. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

45. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

46. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

47. The compound of claim 1 , represented by the following structural formula:

or a pharmaceutically acceptable salt thereof.

48. A compound of any of the following structural formulas:

or a pharmaceutically acceptable salt thereof.

49. A pharmaceutical composition, comprising a therapeutically effective amount of a compound represented by the following structural formula:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is —N— and X 2 is —C(R 9 )—, or X 1 is —C(R 9 )— and X 2 is —N—;

R 9 is —H, halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 20 R 21 or —NR 20 R 21 ;

R 20 and R 21 are each independently —H or (C 1 -C 6 )alkyl;

R 1 is halo, —CN, —C(O)NR 10 R 11 , —C(O)(C 1 -C 6 )alkyl, —OR 12 or —NR 10 R 11 ;

R 10 and R 11 are each independently —H or (C 1 -C 6 )alkyl;

R 12 is —H or (C 1 -C 6 )alkyl;

R 2 is —NR 13 R 14 ;

R 13 and R 14 are each independently —H or (C 1 -C 6 )alkyl, or taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl optionally substituted with one or more R 30 ;

R 30 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 3 is —H, halo, cyano or (C 1 -C 6 )alkyl;

R 4 is —H, (C 1 -C 6 )alkyl, hydroxy(C 1 -C 6 )alkyl or —C(O)(C 1 -C 6 )alkyl;

R 5 is —H; and

R 6 is —H, halo, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy or (C 3 -C 7 )cycloalkoxy; or

R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl or (C 5 -C 6 )heteroaryl optionally substituted with one or more R 40 , or (C 5 -C 8 )carbocyclyl or (C 5 -C 8 )heterocyclyl optionally substituted with one or more R 50 ;

R 40 , for each occurrence, is optionally and independently halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 50 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 7 is halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 17 R 18 or —NR 17 R 18 ;

R 17 and R 18 are each independently —H or (C 1 -C 6 )alkyl;

R 8 , for each occurrence, is independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

m is 0 or 1, provided that if R 9 is halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy, m is 0; and

n is 0, 1 or 2, and

one or more pharmaceutically acceptable carriers.

50. A pharmaceutical combination, comprising a therapeutically effective amount of a compound represented by the following structural formula:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is —N— and X 2 is —C(R 9 )—, or X 1 is —C(R 9 )— and X 2 is —N—;

R 9 is —H, halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 20 R 21 or —NR 20 R 21 ;

R 20 and R 21 are each independently —H or (C 1 -C 6 )alkyl;

R 1 is halo, —CN, —C(O)NR 10 R 11 , —C(O)(C 1 -C 6 )alkyl, —OR 12 or —NR 10 R 11 ;

R 10 and RH are each independently —H or (C 1 -C 6 )alkyl;

R 12 is —H or (C 1 -C 6 )alkyl;

R 2 is —NR 13 R 14 ;

R 13 and R 14 are each independently —H or (C 1 -C 6 )alkyl, or taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl optionally substituted with one or more R 30 ;

R 30 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 3 is —H, halo, cyano or (C 1 -C 6 )alkyl;

R 4 is —H, (C 1 -C 6 )alkyl, hydroxy(C 1 -C 6 )alkyl or —C(O)(C 1 -C 6 )alkyl;

R 5 is —H; and

R 6 is —H, halo, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy or (C 3 -C 7 )cycloalkoxy; or

R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl or (C 5 -C 6 )heteroaryl optionally substituted with one or more R 40 , or (C 5 -C 8 )carbocyclyl or (C 5 -C 8 )heterocyclyl optionally substituted with one or more R 50 ;

R 40 , for each occurrence, is optionally and independently halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 50 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 7 is halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 17 R 18 or —NR 17 R 18 ;

R 17 and R 18 are each independently —H or (C 1 -C 6 )alkyl;

R 8 , for each occurrence, is independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

m is 0 or 1, provided that if R 9 is halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy, m is 0; and

n is 0, 1 or 2, and

a therapeutically effective amount of one or more other therapeutic agents.

51. A method of improving intestinal barrier function in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of a compound represented by the following structural formula:

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is —N— and X 2 is —C(R 9 )—, or X 1 is —C(R 9 )— and X 2 is —N—;

R 9 is —H, halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 20 R 21 or —NR 20 R 21 ;

R 20 and R 21 are each independently —H or (C 1 -C 6 )alkyl;

R 1 is halo, —CN, —C(O)NR 10 R 11 , —C(O)(C 1 -C 6 )alkyl, —OR 12 or —NR 10 R 11 ;

R 10 and R 11 are each independently —H or (C 1 -C 6 )alkyl;

R 12 is —H or (C 1 -C 6 )alkyl;

R 2 is —NR 13 R 14 ;

R 13 and R 14 are each independently —H or (C 1 -C 6 )alkyl, or taken together with the N to which they are attached, form a (C 3 -C 7 )heterocyclyl optionally substituted with one or more R 30 ;

R 30 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 3 is —H, halo, cyano or (C 1 -C 6 )alkyl;

R 4 is —H, (C 1 -C 6 )alkyl, hydroxy(C 1 -C 6 )alkyl or —C(O)(C 1 -C 6 )alkyl;

R 5 is —H; and

R 6 is —H, halo, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy or (C 3 -C 7 )cycloalkoxy; or

R 5 and R 6 , taken together with their intervening atoms, form a (C 6 )aryl or (C 5 -C 6 )heteroaryl optionally substituted with one or more R 40 , or (C 5 -C 8 )carbocyclyl or (C 5 -C 8 )heterocyclyl optionally substituted with one or more R 50 ;

R 40 , for each occurrence, is optionally and independently halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 50 , for each occurrence, is optionally and independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

R 7 is halo, hydroxy, cyano, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy, (C 1 -C 6 )haloalkoxy, —C(O)NR 17 R 18 or —NR 17 R 18 ;

R 17 and R 18 are each independently —H or (C 1 -C 6 )alkyl;

R 8 , for each occurrence, is independently halo, oxo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy;

m is 0 or 1, provided that if R 9 is halo, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )haloalkyl, (C 1 -C 6 )alkoxy or (C 1 -C 6 )haloalkoxy, m is 0; and

n is 0, 1 or 2, and

a therapeutically effective amount of one or more other therapeutic agents.

Assignments (4)
CHANGE OF NAME Recorded Apr 27, 2022
From: SUMITOMO DAINIPPON PHARMA ONCOLOGY, INC.
To: SUMITOMO PHARMA ONCOLOGY, INC.
Reel/Frame 059809/0557 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2020
From: BEARSS, DAVID J.; SIDDIQUI-JAIN, ADAM; WARNER, STEVEN L.; WHATCOTT, CLIFFORD J.
To: SUMITOMO DAINIPPON PHARMA ONCOLOGY, INC.
Reel/Frame 053453/0429 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2020
From: SEENISAMY, JEYAPRAKASHNARAYANAN
To: SYNGENE INTERNATIONAL LIMITED
Reel/Frame 053453/0487 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2020
From: SYNGENE INTERNATIONAL LIMITED
To: SUMITOMO DAINIPPON PHARMA ONCOLOGY, INC.
Reel/Frame 053455/0012 →