IP Library Granted Patent US 11,654,166
Granted Patent B2
US 11,654,166 · App. 16/959,666 · Granted May 23, 2023

Therapeutic bacteriophage compositions for treating

Inventors: Sandra P. Morales (Sydney, AU); Gillian Mearns (Sydney, AU); Deborah A. Rankin (Sydney, AU); Frenk Smrekar (Ljubjlana, SI)
Assignee: ARMATA PHARMACEUTICALS, INC.
A61K35/76A61K9/0019A61P31/14A61K45/06
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Quick Facts
Patent No.
US 11,654,166
App. No.
16/959,666
Granted
May 23, 2023
Kind
B2
Abstract

The present disclosure relates to a bacteriophage composition comprising one or more (suitably two or more, or three) obligately lytic bacteriophages capable of infecting and lysing Staphylococcus aureus , and use of the same for treating Staphylococcus aureus bacterial infections.

Claims (34)

1. A bacteriophage composition substantially free of bacterial components comprising two or more obligately lytic bacteriophages, wherein at least one of the bacteriophages comprises a nucleotide sequence having at least 90% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3.

2. The bacteriophage composition of claim 1 , wherein the composition's target bacteria range is broader than the range of any individual bacteriophage in the composition.

3. The bacteriophage composition of claim 1 , where the composition comprises at least one bacteriophage comprising a nucleotide sequence having at least 90% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3; and at least one additional bacteriophage.

4. The composition of claim 1 , wherein the composition is substantially free of bacterial endotoxin.

5. The composition of claim 1 , wherein the bacterial composition is substantially free of bacterial host protein.

6. The composition of claim 1 , wherein the composition further comprises a pharmaceutically acceptable excipient, diluent, or carrier, or combinations thereof.

7. The composition of claim 6 , wherein the pharmaceutically acceptable carrier, diluent, excipient or combinations thereof comprises calcium salt or magnesium salt.

8. The composition of claim 1 , wherein the composition is a liquid, semi-liquid, solid, frozen, or lyophilized formulation.

9. The composition of claim 1 , wherein the two or more bacteriophages infect and lyse methicillin-resistant Staphylococcus aureus or methicillin-sensitive Staphylococcus aureus.

10. The composition of claim 1 , wherein the composition comprises between 1×10 5 and 1×10 11 PFU of each bacteriophage.

11. The composition of claim 1 , wherein the composition is to be administered at a dosage of 1×10 9 to 3×10 11 total PFU per milliliter.

12. The composition of claim 1 , wherein the composition is stored at 2-8° C. or at room temperature.

13. The composition of claim 1 , wherein the nucleotide sequence of at least one bacteriophage in the composition is not naturally-occurring.

14. The composition of claim 1 , wherein the composition comprises two or more bacteriophages, wherein the two or more bacteriophages individually comprise a nucleotide sequence having at least 90% identity to SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3.

15. The composition of claim 1 , wherein the obligately lytic bacteriophages are capable of complementation.

16. A bacteriophage composition substantially free of bacterial components comprising one or more obligately lytic bacteriophages and a storage medium for storage at a temperature at or below 8° C., wherein the bacteriophage comprises a nucleotide sequence having at least 90% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3, wherein each individual bacteriophage is not prone to generalized transduction and does not carry an antibiotic resistance gene.

17. The bacteriophage composition of claim 16 , wherein the storage medium comprises a cryoprotectant.

18. The bacteriophage composition of claim 17 , wherein the cryoprotectant comprises glycerol or sucrose.

19. The bacteriophage composition of claim 18 , wherein the glycerol is in a concentration of about 5% to about 30% (v/v) and the sucrose is in a concentration of about 10% (v/v).

20. The bacteriophage composition of claim 16 , wherein the composition is substantially free of bacterial endotoxin.

21. The composition of claim 16 , wherein the composition is substantially free of bacterial host protein.

22. The composition of claim 16 , wherein the composition further comprises a pharmaceutically acceptable excipient, diluent, or carrier, or combinations thereof.

23. The composition of claim 22 , wherein the pharmaceutically acceptable carrier, diluent, excipient or combinations thereof comprises calcium salt or magnesium salt.

24. The composition of claim 16 , wherein the composition is a liquid, semi-liquid, solid, frozen, or lyophilized formulation.

25. The composition of claim 16 , wherein the bacteriophages of the composition infect and lyse methicillin-resistant Staphylococcus aureus or methicillin-sensitive Staphylococcus aureus.

26. The composition of claim 16 , wherein the composition comprises between 1×10 5 and 1×10 11 PFU of each bacteriophage.

27. The composition of claim 16 , wherein the composition is to be administered at a dosage ranging between 1×10 9 PFU and 3×10 11 total PFU per milliliter.

28. The composition of claim 16 , wherein the composition is stored at 2-8° C. or at room temperature.

29. The composition of claim 16 , wherein the nucleotide sequence of at least one bacteriophage is not naturally-occurring.

30. The bacteriophage composition of claim 16 , wherein the bacteriophage comprises a nucleotide sequence having at least 93% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3.

31. A bacteriophage composition substantially free of bacterial components comprising one or more obligately lytic bacteriophages, wherein the bacteriophage comprises a nucleotide sequence having at least 90% but not 100% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3, wherein each individual bacteriophage is not prone to generalized transduction and does not carry an antibiotic resistance gene.

32. The bacteriophage composition of claim 31 , wherein the bacteriophage comprises a nucleotide sequence having at least 93% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3.

33. A bacteriophage composition substantially free of bacterial components comprising one or more non-naturally occurring, obligately lytic bacteriophages, wherein at least one of the bacteriophages comprises a nucleotide sequence having at least 90% identity to any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NO: 3; wherein each individual bacteriophage is not prone to generalized transduction and does not carry an antibiotic resistance gene.

34. The composition of claim 33 , wherein the obligately lytic bacteriophages are capable of complementation.

Assignments (7)
SECURITY INTEREST Recorded May 20, 2026
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 074715/0208 →
SECURITY INTEREST Recorded Aug 14, 2025
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 072025/0567 →
SECURITY INTEREST Recorded Mar 17, 2025
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 070532/0979 →
SECURITY INTEREST Recorded Mar 5, 2024
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC.; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 066657/0409 →
SECURITY INTEREST Recorded Jul 14, 2023
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC.; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 064262/0958 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 12, 2023
From: MORALES, SANDRA P.; MEARNS, GILLIAN; RANKIN, DEBORAH A.; SMREKAR, FRENK
To: AMPLIPHI BIOSCIENCES CORPORATION
Reel/Frame 063301/0643 →
SECURITY INTEREST Recorded Feb 17, 2023
From: ARMATA PHARMACEUTICALS, INC.; C3J THERAPEUTICS, INC.; C3 JIAN, LLC
To: INNOVIVA STRATEGIC OPPORTUNITIES LLC
Reel/Frame 062733/0983 →
Continuity (4)
Provisional Application 62731775 · Sep 14, 2018
Provisional Application 62678611 · May 31, 2018
Provisional Application 62613050 · Jan 2, 2018
Related Publication 20210077551A1 · Mar 18, 2021