Phosphoalkyl ribose polymers comprising biologically active compounds
Compounds useful as biologically active compounds are disclosed. The compounds have the following structure (I): or a stereoisomer, tautomer or salt thereof, wherein R 1 , R 2 , R 3 , R 4 , R 5 , L, L 1 , L 2 , L 3 , L 4 , M, q, w and n are as defined herein. Methods associated with preparation and use of such compounds is also provided.
1. A compound having the following structure (I):
or a stereoisomer, pharmaceutically acceptable salt or tautomer thereof, wherein:
M is, at each occurrence, independently a biologically active moiety or a fluorescent dye, wherein at least one occurrence of M is not a fluorescent dye;
L is a physiologically cleavable linker having one of the following structures:
L 1 , L 2 , L 3 and L 4 are, at each occurrence, independently an optional alkylene or heteroalkylene linkers;
R 1 is, at each occurrence, independently H, alkyl or alkoxy;
R 2 is an electron pair, H, alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, phospho, thiophospho, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl and thiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R 3 is H, OH, SH, —NH 2 , alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, phosphate, thiophosphate, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R a is O or S;
R b is OH, SH, O − , S − , OR d or SR d− ;
R d is a counter ion;
R 4 is, at each occurrence, independently O − , S − , OZ, SZ or N(R 6 ) 2 , where Z is a cation and each R 6 is independently H or alkyl;
R 5 is, at each occurrence, independently oxo, thioxo or absent;
Q is, at each occurrence, independently a moiety comprising sulfhydryl, disulfide, activated ester, isothiocyanate, azide, alkyne, alkene, diene, dienophile, acid halide, sulfonyl halide, phosphine, α-haloamide, biotin, amino or a maleimide;
L′ is, at each occurrence, independently a linker comprising a covalent bond to Q, a targeting moiety, a linker comprising a covalent bond to a targeting moiety, a solid support or solid support residue, a linker comprising a covalent bond to a solid support or solid support residue or a linker comprising a covalent bond to a further compound of structure (I);
n is an integer of 1 or greater;
q is an integer of 1 or greater for at least one integral value of n; and
w is an integer of 0 or greater for each integral value of n,
wherein at least one occurrence of L comprises oxygen and 3 or fewer carbons when n is greater than 1.
2. The compound of claim 1 , wherein the compound has the following structure (Ia):
wherein:
M is, at each occurrence, independently a biologically active moiety or a fluorescent dye, wherein at least one occurrence of M is not a fluorescent dye;
L is a physiologically cleavable linker having one of the following structures:
L 1 and L 2 are, at each occurrence, independently an optional alkylene or heteroalkylene linkers;
R 1 is, at each occurrence, independently H, alkyl or alkoxy;
R 2 is an electron pair, H, alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, phospho, thiophospho, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl and thiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R 3 is H, OH, SH, —NH 2 , alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, phosphate, thiophosphate, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R a is O or S;
R b is OH, SH, O − , S − , OR d or SR d ;
R d is a counter ion;
R 4 is, at each occurrence, independently O − , S − , OZ, SZ or N(R 6 ) 2 , where Z is a cation and each R 6 is independently H or alkyl;
R 5 is, at each occurrence, independently oxo, thioxo or absent;
Q is, at each occurrence, independently a moiety comprising sulfhydryl, disulfide, activated ester, isothiocyanate, azide, alkyne, alkene, diene, dienophile, acid halide, sulfonyl halide, phosphine, α-haloamide, biotin, amino or a maleimide;
L′ is, at each occurrence, independently a linker comprising a covalent bond to Q, a targeting moiety, a linker comprising a covalent bond to a targeting moiety, a solid support or solid support residue, a linker comprising a covalent bond to a solid support or solid support residue or a linker comprising a covalent bond to a further compound of structure (I); and
n is an integer from 1 to 10,
wherein at least one occurrence of L comprises oxygen and 3 or fewer carbons when n is greater than 1.
3. The compound of claim 2 , wherein the compound has the following structure (Ib):
wherein:
R 7 , R 8 , R 9 and R 10 are, at each occurrence, independently H or alkyl; and
x 1 and y 1 are, at each occurrence, independently an integer from 0 to 5.
4. The compound of claim 1 , wherein R 2 has one of the following structures:
wherein:
R 2a is —OH, —SH, —NH 2 , phosphate, thiophosphate or L′;
R 4a and R 4b are independently O − , S − , OZ or SZ, where Z is a cation;
R 5a and R 5b are independently oxo, or thioxo; and
a, b and c are each independently integers from 1 to 10.
5. The compound of claim 1 , wherein R 3 has one of the following structures:
wherein:
R 3a is —OH, —SH, —NH 2 , phosphate, thiophosphate or L′;
R 4a and R 4b are independently O − , S − , OZ or SZ, where Z is a cation;
R 5a and R 5b are independently oxo, or thioxo; and
b and c are each independently integers from 1 to 10.
6. A compound having the following structure (II):
or a stereoisomer, pharmaceutically acceptable salt or tautomer thereof, wherein:
M is, at each occurrence, independently a biologically active moiety or a fluorescent dye, wherein at least one occurrence of M is not a fluorescent dye;
L is a physiologically cleavable linker having one of the following structures:
L 1 and L 2 are, at each occurrence, independently an optional alkylene or heteroalkylene linkers;
R 1 is, at each occurrence, independently H, alkyl or alkoxy;
R 2 is an electron pair, H, alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, phospho, thiophospho, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, alkylphospho, alkylthiophospho, alkyletherphospho, alkyletherthiophospho, phosphoalkyl, phosphoalkylether, thiophosphoalkyl and thiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R 3 is H, OH, SH, —NH 2 , alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, phosphate, thiophosphate, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether, —OP(═R a )(R b )OL′, Q or a protected form thereof, or L′, wherein the alkyl, alkylether, hydroxylalkyl, aminoalkyl, hydroxylalkylether, sulfhydrylalkyl, sulfyhdrylalkylether, cyanoalkyl, —Oaralkyl, alkylphospho, alkylthiophospho, —Oalkylphospho, —Oalkylthiophospho, alkyletherphospho, alkyletherthiophospho, —Oalkyletherphospho, —Oalkyletherthiophospho phosphoalkyl, phosphoalkylether, thiophosphoalkyl, thiophosphoalkylether, —Ophosphoalkyl, —Ophosphoalkylether, —Othiophosphoalkyl, —Othiophosphoalkylether are optionally substituted with hydroxyl, amino, sulfhydryl, phosphate, thiophosphate, phosphoalkyl, thiophosphoalkyl, phosphoalkylether or thiophosphoalkylether, or combinations thereof;
R a is O or S;
R b is OH, SH, O − , S − , OR d or SR d ;
R d is a counter ion;
R 4 is, at each occurrence, independently O − , S − , OZ, SZ or N(R 6 ) 2 , where Z is a cation and each R 6 is independently H or alkyl;
R 5 is, at each occurrence, independently oxo, thioxo or absent;
Q is, at each occurrence, independently a moiety comprising sulfhydryl, disulfide, activated ester, isothiocyanate, azide, alkyne, alkene, diene, dienophile, acid halide, sulfonyl halide, phosphine, α-haloamide, biotin, amino or a maleimide;
L′ is, at each occurrence, independently a linker comprising a covalent bond to Q, a targeting moiety, a linker comprising a covalent bond to a targeting moiety, a solid support or solid support residue, a linker comprising a covalent bond to a solid support or solid support residue or a linker comprising a covalent bond to a further compound of structure (II); and
n is an integer of 1 or greater,
wherein at least one occurrence of L comprises oxygen and 3 or fewer carbons when n is greater than 1.
7. A compound having the following structure (III):
or a stereoisomer, pharmaceutically acceptable salt or tautomer thereof, wherein:
M is a biologically active moiety;
L is a physiologically cleavable linker having one of the following structures:
R 1 is H, alkyl or alkoxy;
R 2 is H, an electron pair, a cation or L′;
R 3 is H, phosphate, OH or L′;
R 4 is O − , S − , OZ or SZ, where Z is a cation;
R 5 is oxo or thioxo;
R 7 , R 8 , R 9 and R 10 are, at each occurrence, independently H or alkyl; and
x and y are, each independently an integer from 0 to 5.
8. The compound of claim 1 , wherein L 1 or L 2 has one of the following structures:
wherein b is an integer from 2 to 10.
9. The compound of claim 1 , wherein L′ is a linker comprising a covalent bond to Q.
10. The compound of claim 1 , wherein the targeting moiety is an antibody or cell surface receptor antagonist, wherein the antibody or cell surface receptor antagonist is an epidermal growth factor receptor (EGFR) inhibitor, a hepatocyte growth factor receptor (HGFR) inhibitor, an insulin-like growth factor receptor (IGFR) inhibitor, a folate, or a MET inhibitor.
11. A compound, having one of the following structures:
or a salt or stereoisomer thereof, wherein:
M is, at each occurrence, independently a biologically active moiety or a fluorescent dye, wherein at least one occurrence of M is not a fluorescent dye;
L is a physiologically cleavable linker having one of the following structures:
L′ is a linker comprising a covalent bond to Q, a targeting moiety, a linker comprising a covalent bond to a targeting moiety, a solid support or solid support residue or a linker comprising a covalent bond to a solid support or solid support residue;
Q is a moiety comprising sulfhydryl, disulfide, activated ester, isothiocyanate, azide, alkyne, alkene, diene, dienophile, acid halide, sulfonyl halide, phosphine, α-haloamide, biotin, amino or a maleimide; and
n is an integer of 1 or greater,
wherein at least one occurrence of L comprises oxygen and 3 or fewer carbons when n is greater than 1.
12. The compound of claim 1 , wherein L is, at each occurrence, independently a linker comprising an amide bond, an ester bond, a disulfide bond, a double bond, a triple bond, an ether bond, a ketone, a diol, a cyano, a nitro or combinations thereof.
13. The compound of claim 1 , wherein M is at each occurrence, independently an NSAID, a kinase inhibitor, an anthracycline, an EGFR inhibitor or an alkylating agent.
14. The compound of claim 1 , wherein at least one occurrence of M has one of the following structures:
15. The compound of claim 1 , wherein M is, at each occurrence, independently an anti-cancer drug, and the targeting moiety is an antibody specific for a tumor cell antigen.
16. The compound of claim 1 , wherein the compound is selected from one of the following:
17. A composition comprising the compound of claim 1 and a pharmaceutically acceptable carrier.
18. A composition comprising a plurality of conjugates, the conjugates comprising a compound of claim 1 covalently bound to an antibody via a single linkage, wherein the plurality of conjugates has at least 90% structural homogeneity.
19. A method of treating a disease, the method comprising administering to a subject in need thereof a therapeutically effective amount of a compound of claim 1 , wherein each M is independently the biologically active moiety, the biologically active moiety being effective for treating the disease.
20. A method of treating a disease, the method comprising administering to a subject in need thereof a therapeutically effective amount of a compound of claim 6 , wherein each M is independently the biologically active moiety, the biologically active moiety being effective for treating the disease.
21. A method of treating a disease, the method comprising administering to a subject in need thereof a therapeutically effective amount of a compound of claim 7 , wherein each M is independently the biologically active moiety, the biologically active moiety being effective for treating the disease.
22. A method of treating a disease, the method comprising administering to a subject in need thereof a therapeutically effective amount of a compound of claim 11 , wherein each M is independently the biologically active moiety, the biologically active moiety being effective for treating the disease.