IP Library Granted Patent US 11,998,618
Granted Patent B2
US 11,998,618 · App. 17/125,449 · Granted Jun 4, 2024

Frataxin expression constructs

Inventors: Stephen Schauer (Rockville, MD); Darby Thomas (Blacksburg, VA); Gregory Robinson (Cambridge, MA); Mark Pykett (Cambridge, MA); Richard Thorn (Cambridge, MA); Kirsten Gruis (Cambridge, MA)
Assignee: PRECIGEN, INC.
A61K48/0058A61K38/1709A61K48/005A61K48/0066A61K48/0075A61P25/00C07K14/47C12N15/86C12N15/8645C12N2750/14143C12N2830/002
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Quick Facts
Patent No.
US 11,998,618
App. No.
17/125,449
Granted
Jun 4, 2024
Kind
B2
Abstract

The invention provides polynucleotides, vectors and viruses expressing frataxin and methods of treating Friedreich's Ataxia.

Claims (47)

1. A method of treating at least one symptom of Friedreich's Ataxia in a subject in need thereof, said method comprising administering to said subject a therapeutically effective amount of a composition comprising:

(a) an adeno-associated viral (AAV) vector, wherein said AAV vector comprises a nucleic acid molecule encoding human frataxin operably linked to:

a 5′UTR selected from 5U2, FTH1, GAPDH, and RPL6-5′Splice;

a 3′UTR selected from a SV40 early adenylation sequence, a SV40 late adenylation sequence, a human growth hormone polyadenylation sequence (hGHpA), and a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7; and

a control element that directs transcription and/or translation; and

(b) a pharmaceutically acceptable excipient,

wherein the at least one symptom of Friedreich's Ataxia comprises loss of coordination in the arms and/or legs; and

wherein the administering comprises intrathecal (IT) administration, intracerebroventricular (ICV) administration, intraparenchymal administration, intracerebellar administration, or a combination thereof.

2. The method of claim 1 , wherein said frataxin is expressed in the mitochondria, cerebellum, hippocampus, anterior cortex, dorsal root ganglion, or a combination thereof of the subject.

3. The method of claim 1 wherein said frataxin is expressed in said subject at a level of greater than 25% of normal levels of frataxin.

4. The method of claim 1 wherein said frataxin is expressed in said subject at a level of greater than 30% of normal levels of frataxin.

5. The method of claim 1 wherein said frataxin is expressed in said subject at a level of greater than 40% of normal levels of frataxin.

6. The method of claim 1 wherein said frataxin is expressed in said subject at a level of greater than 50% of normal levels of frataxin.

7. The method of claim 1 , wherein the AAV vector is an AAV5 vector.

8. The method of claim 1 , wherein:

the 5′UTR is FTH1 and the 3′UTR is a SV40 early polyadenylation sequence or a SV40 late polyadenylation sequence;

the 5′UTR is GAPDH and the 3′UTR is a SV40 late polyadenylation sequence or a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7;

the 5′UTR is 5U2 and the 3′UTR is a human growth hormone polyadenylation sequence (hGHpA) or a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7; or

the 5′UTR is RPL6-5′Splice and the 3′UTR is a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7.

9. The method of claim 1 , wherein the control element comprises a promoter.

10. The method of claim 9 , wherein the promoter is a CMV promoter, a UBC promoter, an EF1α promoter, a PGK1 promoter, or a minimal frataxin promoter.

11. The method of claim 9 , wherein the promoter is an inducible promoter.

12. The method of claim 11 , wherein the AAV vector further comprises a gene switch that regulates the inducible promoter.

13. The method of claim 12 , wherein the gene switch is an ecdysone receptor (EcR) gene switch.

14. The method of claim 1 , wherein the pharmaceutically acceptable excipient comprises Na 2 HPO 4 , NaH 2 PO 4 , NaCl, KCl, CaCl 2 , MgCl 2 , or a combination thereof.

15. The method of claim 1 , wherein the composition has a pH of about 6.5 to about 7.5.

16. The method of claim 1 , wherein the composition comprises about 1×10 9 to about 2×10 13 g/mL of the AAV vector.

17. The method of claim 1 , wherein about 1×10 10 to about 1×10 15 vg of the AAV vector is administered to the subject.

18. The method of claim 1 , wherein about 3.7×10 10 , about 1.11×10 11 , or about 3.7×10 11 vg/g of the AAV vector is administered to the subject on a brain weight basis.

19. A method of increasing frataxin levels in a subject having a frataxin deficiency, the method comprising administering to the subject:

an adeno-associated viral (AAV) vector, wherein said AAV vector comprises a nucleic acid molecule encoding human frataxin operably linked to:

a 5′UTR selected from 5U2, FTH1, GAPDH, and RPL6-5′Splice;

a 3′UTR selected from a SV40 early adenylation sequence, a SV40 late adenylation sequence, a human growth hormone polyadenylation sequence (hGHpA), and a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7; and

a control element that directs transcription and/or translation,

wherein the frataxin encoded by the nucleic acid molecule is produced by the subject at a level that is at least 25% of frataxin levels produced by a subject not having a frataxin deficiency,

wherein the administering comprises intrathecal (IT) administration, intracerebroventricular (ICV) administration, intraparenchymal administration, intracerebellar administration, or a combination thereof.

20. A method of treating at least one symptom of Friedreich's Ataxia in a subject in need thereof, the method comprising administering to the subject a pharmaceutical formulation comprising:

(a) an adeno-associated viral (AAV) vector, wherein said AAV vector comprises a nucleic acid molecule encoding human frataxin operably linked to a 5′UTR, a 3′UTR, wherein:

the 5′UTR is FTH1 and the 3′UTR is a SV40 early polyadenylation sequence or a SV40 late polyadenylation sequence;

the 5′UTR is GAPDH and the 3′UTR is a SV40 late polyadenylation sequence or a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7;

the 5′UTR is 5U2 and the 3′UTR is a human growth hormone polyadenylation sequence (hGHpA) or a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7; or

the 5′UTR is RPL6-5′Splice and the 3′UTR is a synthetic 3′ regulatory element having a nucleic acid sequence of SEQ ID NO:7, and

(b) phosphate buffer solution (PBS) or Dulbecco's phosphate buffer solution (DPBS),

wherein the frataxin encoded by the at least one nucleic acid molecule is produced by the subject at a level sufficient to treat at least one symptom of Friedreich's Ataxia in the subject; and

wherein the at least one symptom of Friedreich's Ataxia comprises loss of coordination in the arms and/or legs; and

wherein the administering comprises intrathecal (IT) administration, intracerebroventricular (ICV) administration, intraparenchymal administration, intracerebellar administration, or a combination thereof.

21. The method of claim 20 , wherein about 1×10 10 to about 1×10 15 vg of the AAV vector is administered to the subject.

Assignments (5)
PATENT SECURITY AGREEMENT Recorded Sep 3, 2025
From: PRECIGEN, INC.; GENVEC LLC; PRECIGEN ACTOBIO, INC.; EXEMPLAR GENETICS, LLC
To: BIOPHARMA CREDIT PLC, AS COLLATERAL AGENT
Reel/Frame 072828/0564 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 23, 2020
From: ROBINSON, GREGORY; PYKETT, MARK; THORN, RICHARD; GRUIS, KIRSTEN
To: AGILIS BIOTHERAPEUTICS
Reel/Frame 054743/0304 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 23, 2020
From: SCHAUER, STEPHEN; THOMAS, DARBY
To: INTREXON CORPORATION
Reel/Frame 054743/0336 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 23, 2020
From: AGILIS BIOTHERAPEUTICS
To: INTREXON CORPORATION
Reel/Frame 054743/0348 →
CHANGE OF NAME Recorded Dec 23, 2020
From: INTREXON CORPORATION
To: PRECIGEN, INC.
Reel/Frame 054843/0352 →
Continuity (3)
Division 15807350 · Nov 8, 2017
Provisional Application 62419621 · Nov 9, 2016
Related Publication 20210177991A1 · Jun 17, 2021