IP Library Granted Patent US 11,932,643
Granted Patent B2
US 11,932,643 · App. 17/166,737 · Granted Mar 19, 2024

Substituted heterocyclic inhibitors of PTPN11

Inventors: Philip Jones (Houston, TX); Jason Cross (Pearland, TX); Jason Burke (Houston, TX); Timothy McAfoos (Houston, TX); Zhijun Kang (Richmond, TX)
Assignee: NAVIRE PHARMA, INC.
C07D487/04A61P35/00C07D519/00
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Quick Facts
Patent No.
US 11,932,643
App. No.
17/166,737
Granted
Mar 19, 2024
Kind
B2
Abstract

The present invention relates to compounds which may be useful as inhibitors of PTPN11 for the treatment or prevention of cancer and other PTP-mediated diseases. Disclosed herein are new compounds and compounds based on pyrazolopyrazines and their application as pharmaceuticals for the treatment of disease.

Claims (46)

1. A compound of structural Formula I

or a salt or tautomer thereof, wherein:

a is 0 or 1;

b is 0 or 1;

R 1a is selected from the group consisting of halo, C 6-10 aryl, C 3-8 cycloalkyl, C 3-8 cycloalkenyl, and a 5-9 membered heteroaryl group containing 1 to 4 heteroatoms or groups independently selected from the group consisting of N, C(O), 0, and S; said aryl or heteroaryl of R 1a is unsubstituted or substituted with 1 to 5 R 12 groups independently selected from the group consisting of halo, hydroxy, amino, C 1-4 alkylamino, C 1-4 dialkylamino, cyano, C 1-4 alkyl, C 1-4 alkoxy, C 1-4 hydroxyalkyl, C 1-4 dihydroxyalkyl, hydroxyC 1-4 alkoxy, dihydroxyC 1-4 alkoxy, C 1-4 haloalkyl, C 1-4 aminoalkyl, C 3-8 cycloalkyl, C 3-8 cycloalkenyl, NR 15 C(O)R 13 , NR 15 C(O)OR 13 , NR 13 C(O)NR 15 R 16 , NR 15 S(O)R 13 , NR 15 S(O) 2 R 13 , C(O)NR 15 R 16 , S(O)NR 15 R 16 , S(O) 2 NR 15 R 16 , C(O)R 13 , C(O)OR 13 , OR 13 , SR 13 , S(O)R 13 , and S(O) 2 R 13 ;

R 1b is selected from the group consisting of cyano, C 1-6 haloalkyl, C 1-6 hydroxyalkyl, C 1-6 dihydroxyalkyl, —CF 2 OH, —CHFOH, —NH—NHR 19 , —NH—OR 19 , —O—NR 19 R 20 , —NHR 19 , —OR 19 , —NHC(O)R 19 , —NHC(O)NHR 19 , —NHS(O) 2 NHR 19 , —NHS(O) 2 R 19 , —C(O)OR 19 , —C(O)NR 19 R 20 , —C(O)NH(CH 2 ) n OH, —C(O)NH(CH 2 ) n R 21 , —C(O)R 21 , —NH 2 , —OH, —S(O) 2 NR 19 R 20 , C 3 -C 8 cycloalkyl, aryl, heterocyclyl having 1-5 heteroatom ring vertices selected from the group consisting of N, O, S and P, and heteroaryl having 1-5 heteroatom ring vertices selected from the group consisting of N, O, S and P; wherein the subscript n is an integer of from 0 to 6; and wherein the aryl, heteroaryl, heterocyclyl, and cycloalkyl are each unsubstituted or substituted with 1 to 3 members independently selected from the group consisting of C 1-4 alkyl, —OH, —NH 2 , —OR 21 , halogen, cyano and oxo;

R 2 , R 3 , R 10 , and R 11 are each independently selected from the group consisting of hydrogen, C 1-4 alkyl, and C 3-8 cycloalkyl;

R 4 , R 5 , R 8 , and R 9 are independently selected from the group consisting of hydrogen, cyano, C 1-4 alkyl, C 1-4 alkoxy, amino, hydroxy, C 3-8 cycloalkyl, halo, and C 1-4 alkylamino;

R 6 and R 7 together with the carbon atom to which they are both attached form a 3- to 7-membered saturated or unsaturated ring that can contain 1 to 3 heteroatoms or groups independently selected from the group consisting of N, C(O), O, and S(O) m , and that is unsubstituted or substituted with one R 17 group, and that is unsubstituted or substituted with one or more R 18 groups;

m is 0, 1, or 2;

any two groups of R 2 , R 3 , R 4 , R 5 , R 8 , R 9 , R 10 and R 11 can form a 5- to 6-membered ring, optionally containing a N, O or S heteroatom;

any two groups of R 2 , R 4 , R 8 and R 10 can form a direct bond, or a 1 or 2 atom carbon bridge;

R 13 , R 15 , and R 16 are independently selected from the group consisting of hydrogen, C 1-4 alkyl, C 3-8 cycloakyl, and 3- to 6-membered heterocyclyl, wherein said alkyl, cycloalkyl, and 3- to 6-membered heterocyclyl are each unsubstituted or substituted by one or more substituents selected from the group consisting of hydroxy, cyano and halo;

each R 17 and R 18 is independently selected from the group consisting of amino, halo, hydroxy, cyano, trifluoromethyl, trifluoromethoxy, C 1-4 alkyl, and C 1-4 alkoxy;

each R 19 and R 20 is independently selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl, and C 3-6 cycloalkyl; and

each R 21 is independently selected from the group consisting of H, —OH, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 hydroxyalkyl, C 2-6 alkenyl, C 2-6 alkynyl and C 3-6 cycloalkyl.

2. The compound as recited in claim 1 , wherein

R 1b is selected from the group consisting of cyano, C 1-6 haloalkyl, C 1-6 hydroxyalkyl, C 1-6 dihydroxyalkyl, —CF 2 OH, —CHFOH, and C 3 -C 8 cycloalkyl.

3. The compound as recited in claim 1 , wherein

R 1a is phenyl or a 5- to 6-membered heteroaryl group containing 1 to 4 heteroatoms or groups independently selected from the group consisting of N, C(O), O, and S; and

the phenyl or heteroaryl of R 1a is unsubstituted or substituted with 1 to 5 R 12 groups independently selected from the group consisting of halo, hydroxy, amino, C 1-4 alkylamino, C 1-4 dialkylamino, cyano, C 1-4 alkyl, and C 1-4 alkoxy.

4. The compound as recited in claim 1 , wherein R 2 , R 3 , R 4 , R 5 , R 8 , R 9 , R 10 and R 11 are each hydrogen.

5. The compound as recited in claim 1 , wherein R 6 and R 7 together with the carbon atom to which they are both attached forms a 3- to 7-membered saturated or unsaturated ring that contains 1 to 3 heteroatoms or groups independently selected from the group consisting of N, C(O), O, and S(O) m , and that is unsubstituted or substituted with one R 17 group, and that is unsubstituted or substituted with one or more R 18 groups.

6. The compound as recited in claim 1 , wherein R 6 and R 7 together with the carbon atom to which they are both attached form a 3- to 6-membered heterocycloalkyl ring that is unsubstituted or substituted with one R 17 group, and that is unsubstituted or substituted with one or more R 18 groups.

7. The compound as recited in claim 1 , wherein each R 17 is amino; and each R 18 is methyl.

8. The compound as recited in claim 1 , wherein R 1a is selected from the group consisting of:

and

each R 12 is independently selected from the group consisting of halo, hydroxy, amino, C 1-4 alkylamino, C 1-4 dialkylamino, cyano, C 1-4 alkyl, and C 1-4 alkoxy.

9. The compound as recited in claim 8 , wherein each R 12 is independently selected from the group consisting of halo, amino, methylamino, and ethylamino.

10. The compound as recited in claim 1 , wherein R 1a is phenyl or pyridyl, each of which is substituted with 2 R 12 .

11. The compound as recited in claim 1 , wherein R 1b is C 1-6 hydroxyalkyl.

12. The compound as recited in claim 11 , wherein R 1b is —CH 2 OH.

13. The compound as recited in claim 1 , having a structure selected from the group consisting of:

or a salt or tautomer thereof.

14. A pharmaceutical composition comprising a compound as recited in claim 1 , together with a pharmaceutically acceptable carrier.

15. A method of treatment of a PTPN11-mediated disease comprising the administration of a therapeutically effective amount of a compound as recited in claim 1 , to a patient in need thereof.

16. The method as recited in claim 15 , wherein the disease is cancer.

17. The method as recited in claim 16 , wherein the cancer is selected from the group consisting of breast cancer, colon cancer, leukemia, and melanoma.

18. The compound as recited in claim 1 , represented by the formula:

or a pharmaceutically acceptable salt thereof.

19. The compound as recited in claim 1 , represented by the formula:

or a pharmaceutically acceptable salt thereof.

20. The compound as recited in claim 1 , represented by the formula:

or a pharmaceutically acceptable salt thereof.

21. The method as recited in claim 15 , wherein the compound is selected from the group consisting of:

or a pharmaceutically acceptable salt thereof.

Assignments (5)
RELEASE OF SECURITY INTEREST IN PATENT COLLATERAL Recorded Mar 5, 2025
From: BLUE OWL CAPITAL CORPORATION, AS ADMINISTRATIVE AGENT
To: BRIDGEBIO PHARMA, INC.; QED THERAPEUTICS, INC.; EIDOS THERAPEUTICS, INC.; ML BIO SOLUTIONS INC.; CALCILYTIX THERAPEUTICS INC.; ADRENAS THERAPEUTICS INC.; PHOENIX TISSUE REPAIR, INC.; NAVIRE PHARMA, INC.; VENTHERA, INC.; MOLECULAR SKIN THERAPEUTICS, INC.; CANTERO THERAPEUTICS, INC.; COA THERAPEUTICS, INC.; PORTAL THERAPEUTICS, INC.; BRIDGEBIO GENE THERAPY RESEARCH, INC.; FERRO THERAPEUTICS, INC.
Reel/Frame 070551/0095 →
SECURITY INTEREST Recorded Jan 19, 2024
From: BRIDGEBIO PHARMA, INC.; QED THERAPEUTICS, INC.; EIDOS THERAPEUTICS, INC.; THERAS, INC.; ML BIO SOLUTIONS INC.; CALCILYTIX THERAPEUTICS INC.; ADRENAS THERAPEUTICS INC.; PHOENIX TISSUE REPAIR, INC.; NAVIRE PHARMA, INC.; VENTHERA, INC.; MOLECULAR SKIN THERAPEUTICS, INC.; CANTERO THERAPEUTICS, INC.; COA THERAPEUTICS, INC.; PORTAL THERAPEUTICS, INC.; BRIDGEBIO GENE THERAPY RESEARCH, INC.; FERRO THERAPEUTICS, INC.; SUB21, INC.
To: BLUE OWL CAPITAL CORPORATION, AS ADMINISTRATIVE AGENT
Reel/Frame 066355/0126 →
SECURITY INTEREST Recorded Jan 17, 2024
From: CALCILYTIX THERAPEUTICS INC.; ADRENAS THERAPEUTICS INC.; PHOENIX TISSUE REPAIR, INC.; NAVIRE PHARMA, INC.; VENTHERA, INC.; MOLECULAR SKIN THERAPEUTICS, INC.; CANTERO THERAPEUTICS, INC.; COA THERAPEUTICS, INC.; PORTAL THERAPEUTICS, INC.; BRIDGEBIO GENE THERAPY RESEARCH, INC.; FERRO THERAPEUTICS, INC.; SUB21, INC.
To: BLUE OWL CAPITAL CORPORATION, AS ADMINISTRATIVE AGENT
Reel/Frame 066342/0154 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 4, 2021
From: JONES, PHILIP; CROSS, JASON; BURKE, JASON; MCAFOOS, TIMOTHY; KANG, ZHIJUN
To: BOARD OF REGENTS, THE UNIVERSITY OF TEXAS SYSTEM
Reel/Frame 058026/0001 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 4, 2021
From: BOARD OF REGENTS, THE UNIVERSITY OF TEXAS SYSTEM
To: NAVIRE PHARMA, INC.
Reel/Frame 058026/0021 →
Continuity (4)
Continuation 16401047 · May 1, 2019
Provisional Application 62773915 · Nov 30, 2018
Provisional Application 62665818 · May 2, 2018
Related Publication 20210317122A1 · Oct 14, 2021