IP Library Granted Patent US 12,291,576
Granted Patent B2
US 12,291,576 · App. 17/244,856 · Granted May 6, 2025

Anti-CD45 antibodies and conjugates thereof

Inventors: Rahul Palchaudhuri (Somerville, MA); Bradley R. Pearse (Watertown, MA); Hillary Adams (Medford, MA); Sean McDonough (Littleton, MA); Michael Cooke (Boston, MA); Anthony Boitano (Newton, MA)
Assignee: Vor Biopharma Inc.
C07K16/289A61K38/12A61K47/6831A61K47/6849A61P35/02A61K2039/505
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Quick Facts
Patent No.
US 12,291,576
App. No.
17/244,856
Granted
May 6, 2025
Kind
B2
Abstract

Disclosed are anti-CD45 antibodies and antibody drug conjugates (ADCs) useful in therapeutic methods, including targeting CD45 expressing hematopoietic stem cells (HSCs) or immune cells prior to transplantation.

Claims (48)

1. An isolated anti-CD45 antibody, or antigen binding portion thereof, comprising:

(i) a heavy chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 2, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 3, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 4, and comprising a light chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 6, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 7, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 8;

(ii) a heavy chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 10, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 11, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 12, and comprising a light chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 14, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 15, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 16; or

(iii) a heavy chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 18, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 19, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 20, and comprising a light chain comprising a variable region comprising a CDR1 having the amino acid sequence as set forth in SEQ ID NO: 22, a CDR2 having the amino acid sequence as set forth in SEQ ID NO: 23, a CDR3 having the amino acid sequence as set forth in SEQ ID NO: 24.

2. The anti-CD45 antibody, or antigen binding portion thereof, of claim 1 , wherein:

(i) the heavy chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 1;

(ii) the heavy chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 9; or

(iii) the heavy chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 17.

3. The anti-CD45 antibody, or antigen binding portion thereof, of claim 1 , wherein:

(i) the light chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 5;

(ii) the light chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 13; or

(iii) the light chain variable region comprises the amino acid sequence as set forth in SEQ ID NO: 21.

4. The anti-CD45 antibody, or antigen binding portion thereof, of claim 1 , which is (i) a de-immunized antibody, or antigen binding fragment thereof, or (ii) a humanized antibody, or antigen binding fragment thereof, or (iii) a chimeric antibody, or antigen binding fragment thereof.

5. An isolated de-immunized monoclonal anti-CD45 antibody, or antigen binding portion thereof, that specifically binds human CD45 and cyno CD45, wherein the anti-CD45 antibody, or antigen binding portion thereof, of claim 1 is the parent antibody of the de-immunized anti-CD45 antibody, or antigen binding portion thereof.

6. The anti-CD45 antibody of claim 1 , which is an intact monoclonal IgG antibody.

7. The anti-CD45 antibody, or antigen binding portion thereof, of claim 1 , wherein the antibody, or antigen binding portion thereof, is an IgG.

8. A pharmaceutical composition comprising the antibody of claim 1 , and a pharmaceutically acceptable carrier.

9. A method of depleting a population of hematopoietic stem cells (HSC) in a human patient, the method comprising administering to the patient an effective amount of the antibody of claim 1 .

10. The method of claim 9 , further comprising administering to the patient a transplant comprising hematopoietic stem cells.

11. A method comprising administering to a human patient a transplant comprising hematopoietic stem cells, wherein the patient has been previously administered the antibody of claim 1 in an amount sufficient to deplete a population of hematopoietic stem cells or a population of immune cells in the patient.

12. The method of claim 11 , wherein the hematopoietic stem cell is a CD45+ cell.

13. The method of claim 9 , wherein the patient has a blood disease, a metabolic disorder, cancer, or an autoimmune disease, or severe combined immunodeficiency disease (SCID).

14. A method of treating leukemia in a human patient, said method comprising administering the antibody of claim 1 to the human patient having leukemia.

15. An antibody drug conjugate (ADC) comprising the antibody of claim 1 conjugated to a cytotoxin via a linker.

16. The ADC of claim 15 , wherein the cytotoxin is an RNA polymerase inhibitor.

17. The ADC of claim 16 , wherein the RNA polymerase inhibitor is an amatoxin.

18. The ADC of claim 17 , wherein the amatoxin is represented by formula (IV)

wherein R 1 is H, OH, OR A , or OR C ;

R 2 is H, OH, OR B , or OR C ;

R A and R B , together with the oxygen atoms to which they are bound, combine to form an optionally substituted 5-membered heterocycloalkyl group;

R 3 is H, R C , or R D ;

R 4 , R 5 , R 6 , and R 7 are each independently H, OH, OR C , OR D , R C , or R D ;

R 8 is OH, NH 2 , OR C , OR D , NHR C , or NR C R D ;

R 9 is H, OH, OR C , or OR D ;

X is —S—, —S(O)—, or —SO 2 —;

R C is -L-Z;

R D is optionally substituted C 1 -C 6 alkyl, optionally substituted C 1 -C 6 heteroalkyl, optionally substituted C 2 -C 6 alkenyl, optionally substituted C 2 -C 6 heteroalkenyl, optionally substituted C 2 -C 6 alkynyl, optionally substituted C 2 -C 6 heteroalkynyl, optionally substituted cycloalkyl, optionally substituted heterocycloalkyl, optionally substituted aryl, or optionally substituted heteroaryl;

L is optionally substituted C 1 -C 6 alkylene, optionally substituted C 1 -C 6 heteroalkylene, optionally substituted C 2 -C 6 alkenylene, optionally substituted C 2 -C 6 heteroalkenylene, optionally substituted C 2 -C 6 alkynylene, optionally substituted C 2 -C 6 heteroalkynylene, optionally substituted cycloalkylene, optionally substituted heterocycloalkylene, optionally substituted arylene, optionally substituted heteroarylene, a peptide, a dipeptide, —(C═O)—, or a combination thereof; and

Z is a chemical moiety formed from a coupling reaction between a reactive substituent present on L and a reactive substituent present within the antibody or antigen-binding fragment thereof, wherein Am comprises exactly one R C substituent.

19. The ADC of claim 15 , wherein the ADC has a formula of

wherein Ab represents the point of attachment of the anti-CD45 antibody.

20. The ADC of claim 15 , wherein the cytotoxin is selected from the group consisting of a pseudomonas exotoxin A, deBouganin, diphtheria toxin, saporin, maytansine, a maytansinoid, an auristatin, an anthracycline, a calicheamicin, irinotecan, SN-38, a duocarmycin, a pyrrolobenzodiazepine, a pyrrolobenzodiazepine dimer, an indolinobenzodiazepine, and an indolinobenzodiazepine dimer.

21. The ADC of claim 15 , wherein the antibody is conjugated to the cytotoxin by way of a cysteine residue in the Fc domain of the antibody.

22. The ADC of claim 21 , wherein the cysteine residue is introduced by way of an amino acid substitution in the Fc domain of the antibody.

23. A pharmaceutical composition comprising the ADC of claim 15 , and a pharmaceutically acceptable carrier.

24. A method of depleting a population of hematopoietic stem cells (HSC) in a human patient, the method comprising administering to the patient an effective amount of the ADC of claim 15 .

25. A method comprising administering to a human patient a transplant comprising hematopoietic stem cells, wherein the patient has been previously administered the ADC of claim 15 in an amount sufficient to deplete a population of hematopoietic stem cells or a population of immune cells in the patient.

26. A method of treating leukemia in a human patient, said method comprising administering the ADC of claim 15 the human patient having leukemia.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 16, 2026
From: VOR BIOPHARMA, INC.
To: REGENERON PHARMACEUTICALS, INC.
Reel/Frame 073495/0746 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 22, 2025
From: VOR BIOPHARMA, INC.
To: REGENERON PHARMACEUTICALS, INC.
Reel/Frame 074028/0972 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 2, 2024
From: MAGENTA THERAPEUTICS, INC.
To: VOR BIOPHARMA INC.
Reel/Frame 067295/0457 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 13, 2021
From: PALCHAUDHURI, RAHUL; PEARSE, BRADLEY; ADAMS, HILLARY; MCDONOUGH, SEAN; COOKE, MICHAEL; BOITANO, ANTHONY
To: MAGENTA THERAPEUTICS, INC.
Reel/Frame 056226/0209 →
Continuity (5)
Continuation PCTUS2019058971 · Oct 30, 2019
Provisional Application 62807582 · Feb 19, 2019
Provisional Application 62774006 · Nov 30, 2018
Provisional Application 62753002 · Oct 30, 2018
Related Publication 20210371524A1 · Dec 2, 2021
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