IP Library Granted Patent US 12,252,490
Granted Patent B2
US 12,252,490 · App. 17/265,883 · Granted Mar 18, 2025

Inhibiting deubiquitinase USP25 and USP28

Inventors: David J. Guerin (Natick, MA); Justin A. Caravella (Cambridge, MA); Hongbin Li (Madison, CT); Steven Mischke (Waltham, MA); David J. Richard (Littleton, MA); Shawn E. R. Schiller (Haverhill, MA); Tatiana Shelekhin (Ridgefield, CT)
Assignee: Valo Health, Inc.
C07D487/04C07D471/04C07D519/00
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Quick Facts
Patent No.
US 12,252,490
App. No.
17/265,883
Granted
Mar 18, 2025
Kind
B2
Abstract

The present disclosure relates to modulators, such as inhibitors, of at least one pathway chosen from USP28 and USP25, pharmaceutical compositions comprising the inhibitors, and methods of using the inhibitors. The modulators, such as inhibitors, of at least one pathway chosen from USP28 and USP25 can be useful in the treatment of cancers, among other ailments. The present disclosure provides compounds of Formula (I).

Claims (186)

1. A compound of Formula (I):

or pharmaceutically acceptable form thereof, wherein:

X is selected from N or C(R′);

R′ is selected from hydrogen, deuterium, and CH 3 ;

Y is C(R);

R is selected from hydrogen, NH 2 , and C1-C4 alkyl groups;

R 1 is selected from Rx, hydrogen, C1-C5 linear and C3-C5 branched alkyl groups, wherein the alkyl groups are optionally substituted with one or more Rx;

each Rx is selected from halogen or —OH;

R 2 is selected from hydrogen and halogen;

R 3 , R 4 , and R 4′ are each independently selected from hydrogen and C1-C4 alkyl;

R 5 is a 6- to 8-membered heterocyclic ring;

R 6 is selected from hydrogen, deuterium, halogen, C1-C4 alkyl, and —CN; and

n is 0, 1, or 2.

2. The compound of claim 1 , wherein:

X is C(R′);

R′ is selected from hydrogen and deuterium;

R is NH 2 ;

R 1 , R 2 , R 3 , R 4 , and R 4′ are hydrogen;

R 5 is a 6-membered heterocyclic ring; and

n is 0.

3. The compound of claim 1 , wherein:

X is C(R′);

R′ is selected from hydrogen and deuterium;

R is hydrogen;

R 1 is C1-C3 linear alkyl, optionally substituted with one to three Rx;

R 2 and R 3 are hydrogen;

R 4 and R 4′ are independently selected from hydrogen and CH 3 ;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen, deuterium, and halogen; and

n is 0, 1, or 2.

4. The compound of claim 1 , wherein:

X is C(R′), wherein R′ is hydrogen;

R is hydrogen;

R 1 is methyl or ethyl, optionally substituted with one to three Rx;

R 2 and R 3 are hydrogen;

R 4 and R 4′ are independently selected from hydrogen and CH 3 ;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen and halogen; and

n is 0, 1, or 2.

5. The compound of claim 1 , wherein:

X is C(R′);

R′ is selected from hydrogen and deuterium;

R is hydrogen;

R 1 is C3-C4 branched alkyl optionally substituted with one to three Rx;

R 2 and R 3 are hydrogen;

R 4 and R 4′ are independently selected from hydrogen and CH 3 ;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen, deuterium, and halogen; and

n is 0, 1, or 2.

6. The compound of claim 1 , wherein:

X is C(R′), wherein R′ is hydrogen;

R is hydrogen;

R 1 is C3-C4 branched alkyl, optionally substituted with one to three Rx;

R 2 and R 3 are hydrogen;

R 4 and R 4′ are hydrogen;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen and halogen; and

n is 0, 1, or 2.

7. The compound of claim 1 , wherein:

X is C(R′), wherein R′ is hydrogen;

R is hydrogen;

R 1 is hydrogen;

R 2 is halogen;

R 3 is hydrogen;

R 4 and R 4′ are hydrogen;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen and halogen; and

n is 0, 1, or 2.

8. The compound of claim 1 , wherein:

X is C(R′), wherein R′ is hydrogen;

R is hydrogen;

R 1 is selected from hydrogen, and C1-C3 linear alkyl optionally substituted with one to three Rx;

R 2 is halogen;

R 3 is hydrogen;

R 4 and R 4′ are hydrogen;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen and halogen; and

n is 0, 1, or 2.

9. The compound of claim 1 , wherein:

X is N;

R is hydrogen;

R 1 is selected from hydrogen, and C1-C3 linear alkyl optionally substituted with one to three Rx;

R 2 is hydrogen;

R 3 is hydrogen;

R 4 and R 4′ are selected from hydrogen and CH 3 ;

R 5 is a 6-8-membered heterocyclic ring;

R 6 is selected from hydrogen and halogen; and

n is 0, 1, or 2.

10. The compound of claim 1 , wherein R5 is a 6-8 membered heterocyclic ring with two nitrogens.

11. The compound of claim 1 , wherein each halogen is independently selected from F and Cl.

12. The compound of claim 1 , wherein the compound is chosen from:

Ex. #

Structure

Compound Name

1-1

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-2,5-difluorophenethyl)-1-ethyl- 1H-pyrrolo[2,3-b]pyridine-5- carboxamide

1-2

N-(4-(piperazin-1-yl)phenethyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-3

1-methyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-4

1-ethyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-5

4-amino-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-6

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)phenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-7

N-(2,5-difluoro-4-(piperazin-1- yl)phenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-8

N-(4-(piperazin-1-yl)phenethyl)-1- (2,2,2-trifluoroethyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-9

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-2,5-difluorophenethyl)-1-(2- hydroxy-2-methylpropyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-10

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-3-fluorophenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-1

(S)-N-(2-(2,5-difluoro-4-(piperazin- 1-yl)phenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-2

(R)-N-(2-(2,5-difluoro-4-(piperazin- 1-yl)phenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-3

N-((2R)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-4

N-((2S)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

3-1

3-chloro-1-ethyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

3-2

3-chloro-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

4-1

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-2,5-difluorophenethyl)-7-ethyl- 7H-pyrrolo[2,3-c]pyridazine-3- carboxamide

4-2

N-((2R)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-7-ethyl-7H- pyrrolo[2,3-c]pyridazine-3- carboxamide

4-3

N-((2S)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-7-ethyl-7H- pyrrolo[2,3-c]pyridazine-3- carboxamide

4-4

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-2,5-difluorophenethyl)-5- chloro-7-ethyl-7H-pyrrolo[2,3- c]pyridazine-3-carboxamide

and;

wherein the compound is:

(a) a USP28 Inhibitor compound having an IC 50 of 0.001-10 micromolar in the Ubiquitin-Rhodamine 110 Assay for USP28;

(b) a USP25 Inhibitor compound having an IC 50 of 0.001-10 micromolar in the Ubiquitin-Rhodamine 110 Assay for USP25.

13. The compound of claim 12 , wherein the compound is

(c) a USP28 Inhibitor compound having an IC 50 of 0.001-2 micromolar in the Ubiquitin-Rhodamine 110 Assay for USP28;

(d) a USP25 Inhibitor compound having an IC 50 of 0.001-2 micromolar in the Ubiquitin-Rhodamine 110 Assay for USP25.

14. The compound of claim 1 , chosen from:

Ex. #

Structure

Compound Name

1-1

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-y1)-2,5-difluorophenethyl)-1-ethyl- 1H-pyrrolo[2,3-b]pyridine-5- carboxamide

1-2

N-(4-(piperazin-1-yl)phenethyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-3

1-methyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-4

1-ethyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-5

4-amino-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

1-6

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)phenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-7

N-(2,5-difluoro-4-(piperazin-1- yl)phenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-8

N-(4-(piperazin-1-yl)phenethyl)-1- (2,2,2-trifluoroethyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-9

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-yl)-2,5-difluorophenethyl)-1-(2- hydroxy-2-methylpropyl)-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

1-10

N-(4-(3,8-diazabicyclo[3.2.1 ]octan- 3-yl)-3-fluorophenethyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-1

(S)-N-(2-(2,5-difluoro-4-(piperazin- 1-yl)phenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

2-2

(R)-N-(2-(2,5-difluoro-4-(piperazin- 1-yl)phenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5-carboxamide

2-3

N-((2R)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5-carboxamide

2-4

N-((2S)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-1-ethyl-1H- pyrrolo[2,3-b]pyridine-5- carboxamide

3-1

3-chloro-1-ethyl-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

3-2

3-chloro-N-(4-(piperazin-1- yl)phenethyl)-1H-pyrrolo[2,3- b]pyridine-5-carboxamide

4-1

N-(4-(3,8-diazabicyclo[3.2.1 ]octan- 3-yl)-2,5-difluorophenethyl)-7-ethyl- 7H-pyrrolo[2,3-c]pyridazine-3- carboxamide

4-2

N-((2R)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-7-ethyl-7H- pyrrolo[2,3-c]pyridazine-3-carboxamide

4-3

N-((2S)-2-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2,5- difluorophenyl)propyl)-7-ethyl-7H- pyrrolo[2,3-c]pyridazine-3- carboxamide

4-4

N-(4-(3,8-diazabicyclo[3.2.1]octan- 3-y1)-2,5-difluorophenethyl)-5- chloro-7-ethyl-7H-pyrrolo[2,3- c]pyridazine-3-carboxamide

15. A composition comprising at least one compound of claim 1 , and a biologically acceptable carrier.

Assignments (6)
MERGER Recorded Feb 3, 2025
From: VALO EARLY DISCOVERY, INC.
To: VALO HEALTH, INC.
Reel/Frame 070083/0887 →
CHANGE OF NAME Recorded Jan 24, 2025
From: INTEGRAL EARLY DISCOVERY, INC.
To: VALO EARLY DISCOVERY, INC.
Reel/Frame 070005/0521 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 10, 2025
From: FORMA THERAPEUTICS, INC.
To: INTEGRAL EARLY DISCOVERY, INC.
Reel/Frame 069871/0201 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 2, 2024
From: GUERIN, DAVID J.; CARAVELLA, JUSTIN A.; LI, HONGBIN; MISCHKE, STEVEN; RICHARD, DAVID J.; SCHILLER, SHAWN E.R.; SHELEKHIN, TATIANA
To: FORMA THERAPEUTICS, INC.
Reel/Frame 069453/0509 →
RELEASE OF SECURITY INTEREST Recorded Oct 17, 2023
From: FIRST-CITIZENS BANK & TRUST COMPANY, AS AGENT
To: VALO HEALTH, INC.; VALO HEALTH, LLC
Reel/Frame 065255/0660 →
MERGER Recorded Sep 8, 2021
From: VALO EARLY DISCOVERY, INC.
To: VALO HEALTH, INC.
Reel/Frame 057438/0025 →
Continuity (2)
Provisional Application 62716738 · Aug 9, 2018
Related Publication 20210179628A1 · Jun 17, 2021
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