IP Library Granted Patent US 11,980,668
Granted Patent B2
US 11,980,668 · App. 17/287,792 · Granted May 14, 2024

Sulfatase-cleavable linkers for antibody-drug conjugates

Inventors: David Rabuka (Kensington, CA); Junjie Liu (San Diego, CA); Stepan Chuprakov (Emeryville, CA); Romas Alvydas Kudirka (Redwood City, CA)
Assignee: R.P. Scherer Technologies, LLC
A61K47/6803A61K38/07A61K47/6849A61K47/6851A61K47/6889
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Quick Facts
Patent No.
US 11,980,668
App. No.
17/287,792
Granted
May 14, 2024
Kind
B2
Abstract

The present disclosure provides antibody-drug conjugate structures, that include a cleavable linker having a sulfatase-cleavable moiety. The disclosure also encompasses methods of production of such conjugates, as well as methods of using the same.

Claims (58)

1. A conjugate of formula (I):

wherein

Z is CR 4 or N;

R 1 is selected from hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl;

R 2 and R 3 are each independently selected from hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, alkoxy, substituted alkoxy, amino, substituted amino, carboxyl, carboxyl ester, acyl, acyloxy, acyl amino, amino acyl, alkylamide, substituted alkylamide, sulfonyl, thioalkoxy, substituted thioalkoxy, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl, or R 2 and R 3 are optionally cyclically linked to form a 5 or 6-membered heterocyclyl;

each R 4 is independently selected from hydrogen, halogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, alkoxy, substituted alkoxy, amino, substituted amino, carboxyl, carboxyl ester, acyl, acyloxy, acyl amino, amino acyl, alkylamide, substituted alkylamide, sulfonyl, thioalkoxy, substituted thioalkoxy, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl;

R 5 is selected from hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl;

L 1 is a first linker;

L 2 is a second linker;

W 1 is a drug; and

W 2 is an antibody.

2. The conjugate of claim 1 , wherein the conjugate is of formula (Ia):

3. The conjugate of claim 1 , wherein the conjugate is of formula (Ib):

4. The conjugate of claim 1 , wherein the conjugate is of formula (Ic):

5. The conjugate of claim 1 , wherein the conjugate is of formula (Id):

6. The conjugate of claim 1 , wherein the conjugate is of formula (Ie):

7. The conjugate of claim 1 , wherein L 1 comprises:

-(T 1 -V 1 ) a -(T 2 -V 2 ) b -(T 3 -V 3 ) c -(T 4 -V 4 ) d -,

wherein

a, b, c and d are each independently 0 or 1;

T 1 , T 2 , T 3 and T 4 are each independently selected from (C 1 -C 12 )alkyl, substituted (C 1 -C 12 )alkyl, (EDA)w, (PEG)n, (AA)p, —(CR 13 OH) m —, piperidin-4-amino (4AP), an acetal group, a hydrazine, a disulfide, and an ester, wherein EDA is an ethylene diamine moiety, PEG is a polyethylene glycol, and AA is an amino acid residue, wherein each w is an integer from 1 to 20, each n is an integer from 1 to 30, each p is an integer from 1 to 20, and each m is an integer from 1 to 12;

V 1 , V 2 , V 3 and V 4 are each independently selected from the group consisting of a covalent bond, —CO—, —NR 15 —, —NR 15 (CH 2 ) q —, —NR 15 (C 6 H 4 )—, —CONR 15 —, —NR 15 CO—, —C(O)O—, —OC(O)—, —O—, —S—, —S(O)—, —SO 2 —, —SO 2 NR 15 —, —NR 15 SO 2 — and —P(O)OH—, wherein each q is an integer from 1 to 6;

each R 13 is independently selected from hydrogen, an alkyl, a substituted alkyl, an aryl, and a substituted aryl; and

each R 15 is independently selected from hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, carboxyl, carboxyl ester, acyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl.

8. The conjugate of claim 1 , wherein L 2 comprises:

-(T 5 -V 5 ) e -(T 6 -V 6 ) f -(T 7 -V 7 ) g -(T 8 -V 8 ) h -,

wherein

e, f, g and h are each independently 0 or 1;

T 5 , T 6 , T 7 and T 8 are each independently selected from (C 1 -C 12 )alkyl, substituted (C 1 -C 12 )alkyl, (EDA) w , (PEG) n , (AA) p , —(CR 13 OH) m —, piperidin-4-amino (4AP), an acetal group, a hydrazine, a disulfide, and an ester, wherein EDA is an ethylene diamine moiety, PEG is a polyethylene glycol, and AA is an amino acid residue, wherein each w is an integer from 1 to 20, each n is an integer from 1 to 30, each p is an integer from 1 to 20, and each m is an integer from 1 to 12;

V 5 , V 6 , V 7 and V 8 are each independently selected from the group consisting of a covalent bond, —CO—, —NR 15 —, —NR 15 (CH 2 ) q —, —NR 15 (C 6 H 4 )—, —CONR 15 —, —NR 15 CO—, —C(O)O—, —OC(O)—, —O—, —S—, —S(O)—, —SO 2 —, —SO 2 NR 15 —, —NR 15 SO 2 — and —P(O)OH—, wherein each q is an integer from 1 to 6;

each R 13 is independently selected from hydrogen, an alkyl, a substituted alkyl, an aryl, and a substituted aryl; and

each R 15 is independently selected from hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, carboxyl, carboxyl ester, acyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, and substituted heterocyclyl.

9. The conjugate of claim 7 , wherein:

T 1 is selected from a (C 1 -C 12 )alkyl and a substituted (C 1 -C 12 )alkyl;

T 2 , T 3 , and T 4 are each independently selected from (EDA) w , (PEG) n , (C 1 -C 12 )alkyl, substituted (C 1 -C 12 )alkyl, (AA) p , —(CR 13 OH) m —, 4-amino-piperidine (4AP), an acetal group, a hydrazine, and an ester; and

V 1 , V 2 , V 3 and V 4 are each independently selected from the group consisting of a covalent bond, —CO—, —NR 15 , —NR 15 (CH 2 ) q —, —NR 15 (C 6 H 4 )—, —CONR 15 —, —NR 15 CO—, —C(O)O—, —OC(O)—, —O—, —S—, —S(O)—, —SO 2 —, —SO 2 NR 15 —, —NR 15 SO 2 —, and —P(O)OH—;

wherein:

(PEG) n is

where n is an integer from 1 to 30;

EDA is an ethylene diamine moiety having the following structure:

where y is an integer from 1 to 6 and r is 0 or 1;

4-amino-piperidine (4AP) is

each R 12 and R 15 is independently selected from hydrogen, an alkyl, a substituted alkyl, a polyethylene glycol moiety, an aryl and a substituted aryl, wherein any two adjacent R 12 groups may be cyclically linked to form a piperazinyl ring; and

R 13 is selected from hydrogen, an alkyl, a substituted alkyl, an aryl, and a substituted aryl.

10. The conjugate of claim 7 , wherein:

T 1 is (C 1 -C 12 )alkyl and V 1 is —CO—;

T 2 is 4AP and V 2 is a covalent bond;

T 3 is (PEG) n and V 3 is —CONR 15 —; and

T 4 is (C 1 -C 12 )alkyl and V 4 is —CO—.

11. The conjugate of claim 1 , wherein the drug is an auristatin.

12. The conjugate of claim 1 , wherein the drug is a maytansine.

13. A pharmaceutical composition comprising:

a conjugate of claim 1 ; and

a pharmaceutically-acceptable excipient.

14. A method comprising:

administering to a subject an effective amount of a conjugate of claim 1 .

15. A method of treating cancer in a subject, the method comprising:

administering to the subject a therapeutically effective amount of a pharmaceutical composition comprising a conjugate of claim 1 , wherein the administering is effective to treat cancer in the subject.

Assignments (3)
SECURITY INTEREST Recorded Dec 19, 2024
From: CATALENT CTS (KANSAS CITY), LLC; REDWOOD BIOSCIENCE, INC.; R.P. SCHERER TECHNOLOGIES, LLC; CATALENT WELLNESS, LLC; CATALENT PHARMA SOLUTIONS, INC.; CATALENT WELLNESS NEW JERSEY, LLC; CATALENT MARYLAND, INC.; CATALENT GREENVILLE, INC.; CATALENT MICRON TECHNOLOGIES, INC.; CATALENT SAN DIEGO, INC.; CATALENT WELLNESS VIRGINIA, LLC; CATALENT USA PACKAGING, LLC; CATALENT PHARMA SOLUTIONS, LLC
To: ARES CAPITAL CORPORATION, AS COLLATERAL AGENT
Reel/Frame 069743/0458 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 27, 2022
From: KUDIRKA, ROMAS ALVYDAS
To: R.P. SCHERER TECHNOLOGIES, LLC
Reel/Frame 061562/0591 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 13, 2021
From: RABUKA, DAVID; LIU, JUNJIE; CHUPRAKOV, STEPAN
To: R.P. SCHERER TECHNOLOGIES, LLC
Reel/Frame 057495/0065 →