Kits for single-step analyte detection with process control

1. A kit for determining the presence or absence of analyte polynucleotides in a sample, the kit comprising:

an internal control polynucleotide;

one or more amplification reagents to co-amplify a first analyte polynucleotide and the internal control polynucleotide in a nucleic acid amplification reaction to produce an internal control amplicon, and, if the sample contains the first analyte polynucleotide, a first analyte amplicon; and

a first hybridization probe having a first label, the first hybridization probe being capable of forming a first detectable hybrid with the first analyte amplicon, but incapable of forming a detectable hybrid with the internal control amplicon,

a second hybridization probe having a second label, the second hybridization probe being capable of forming a second detectable hybrid with the internal control amplicon, but incapable of forming a detectable hybrid with the first analyte amplicon,

a negative calibrator comprising the internal control polynucleotide, wherein the negative calibrator does not comprise the first analyte polynucleotide, and

one or more standards, each standard comprising the internal control polynucleotide and a known amount of the first analyte polynucleotide,

wherein the first and second labels comprise identical labels.

2. The kit of claim 1 , wherein the first and second hybridization probes are packaged in a single container as a combined probe reagent.

3. The kit of claim 2 , wherein the amplification reagents to co-amplify the first analyte polynucleotide and the internal control polynucleotide comprise amplification reagents to co-amplify a second analyte polynucleotide in the nucleic acid amplification reaction to produce a second analyte amplicon, wherein amplification reagents to co-amplify the second analyte polynucleotide comprise an independent primer set specific for the second analyte.

4. The kit of claim 2 , further comprising

a negative calibrator comprising the internal control polynucleotide, wherein the negative calibrator does not comprise the first analyte polynucleotide, and

one or more standards, each standard comprising the internal control polynucleotide and a known amount of the first analyte polynucleotide.

5. The kit of claim 2 , wherein the amplification reagents comprise a reverse transcriptase and deoxyribonucleotide triphosphates.

6. The kit of claim 2 , wherein at least one of the first and second hybridization probes comprises a nucleotide analog.

7. The kit of claim 2 , wherein at least one of the first and second hybridization probes comprises a backbone with a non-nucleotide linker.

8. The kit of claim 1 , wherein the identical labels are either identical fluorescent labels or identical chemiluminescent labels.

9. The kit of claim 1 , wherein the amplification reagents to co-amplify the first analyte polynucleotide and the internal control polynucleotide further comprise amplification reagents to co-amplify a second analyte polynucleotide in the nucleic acid amplification reaction to produce a second analyte amplicon, wherein amplification reagents to co-amplify the second analyte polynucleotide comprise an independent primer set specific for the second analyte.

10. The kit of claim 9 , further comprising a third hybridization probe having a third label, the third hybridization probe being capable of forming a third detectable hybrid with the second analyte amplicon, but incapable of forming a detectable hybrid with the internal control amplicon or the first analyte amplicon, wherein the third label is distinguishable from the first and second labels.

11. The kit of claim 1 , wherein the amplification reagents to co-amplify the first analyte polynucleotide and the internal control polynucleotide further comprise amplification reagents to co-amplify a second analyte polynucleotide in the nucleic acid amplification reaction to produce a second analyte amplicon, wherein amplification reagents to co-amplify the second analyte polynucleotide comprise an independent primer set specific for the second analyte.

12. The kit of claim 11 , further comprising a third hybridization probe having a third label, the third hybridization probe being capable of forming a third detectable hybrid with the second analyte amplicon, but incapable of forming a detectable hybrid with the internal control amplicon or the first analyte amplicon, wherein the third label is distinguishable from the first and second labels.

13. The kit of claim 12 , further comprising one or more standards comprising the internal control polynucleotide and a known amount of the second analyte polynucleotide.

14. The kit of claim 1 , wherein the internal control polynucleotide comprises an RNA transcript.

15. The kit of claim 1 , wherein the amplification reagents comprise a reverse transcriptase and deoxyribonucleotide triphosphates.

16. The kit of claim 15 , wherein the internal control polynucleotide comprises an RNA transcript.

17. The kit of claim 15 , wherein the amplification reagents further comprise ribonucleotide triphosphates, at least one promoter-primer, and an RNA polymerase.

18. The kit of claim 1 , wherein at least one of the first and second hybridization probes comprises a nucleotide analog.

19. The kit of claim 18 , wherein the amplification reagents comprise a reverse transcriptase, deoxyribonucleotide triphosphates, ribonucleotide triphosphates, at least one promoter-primer, and an RNA polymerase.

20. The kit of claim 1 , wherein at least one of the first and second hybridization probes comprises a backbone with a non-nucleotide linker.

21. The kit of claim 20 , further comprising

a negative calibrator comprising the internal control polynucleotide, wherein the negative calibrator does not comprise the first analyte polynucleotide, and

one or more standards, each standard comprising the internal control polynucleotide and a known amount of the first analyte polynucleotide.

22. The kit of claim 20 , wherein the internal control polynucleotide comprises an RNA transcript.