Facing and quality control in microtomy
The present disclosure relates to systems and methods for facing a tissue block. In some embodiments, a method is provided for facing a tissue block that includes imaging a tissue block to generate imaging data of the tissue block, the tissue block comprising a tissue sample embedded in an embedding material, estimating, based on the imaging data, a depth profile of the tissue block, wherein the depth profile comprises a thickness of the embedding material to be removed to expose the tissue sample to a pre-determined criteria, and removing the thickness of the embedding material to expose the tissue to the pre-determined criteria.
1. A histology system comprising:
a microtome configured to progressively remove one or more sections from a tissue block, the tissue block comprising a tissue sample embedded in an embedding material; and
a vision system associated with the microtome and comprising:
an illumination system configured to illuminate the tissue block comprising the tissue sample embedded in the embedding material;
an imaging system configured to image the tissue block to generate imaging data associated with the tissue block;
a transfer medium to transfer the one or more sections comprising the tissue sample from the tissue block to one or more slides; and
a processor in communication with the vision system, the processor being programed to receive the imaging data and determine, based on the imaging data, when the tissue block has been sufficiently faced by the microtome, to determine an expected outline, size, or shape of the tissue sample from the imaging data prior to removing the one or more sections from the tissue block and to compare the one or more sections on the tissue block, on the transfer medium, or on the one or more slides to a baseline imaging data generated by imaging the tissue block with UV light prior to removing the one or more sections from the tissue block;
wherein the illumination system is configured to illuminate the tissue block with structured light.
2. The histology system of claim 1 , wherein the processor is further programed to determine when the tissue block has been sufficiently faced by recognizing an amount of exposed tissue sample.
3. A histology system comprising:
a microtome configured to progressively remove one or more sections from a tissue block, the tissue block comprising a tissue sample embedded in an embedding material; and
a vision system associated with the microtome and comprising:
an illumination system configured to illuminate the tissue block comprising the tissue sample embedded in the embedding material;
an imaging system configured to image the tissue block to generate imaging data associated with the tissue block; and
a processor in communication with the vision system, the processor being programed to receive the imaging data and determine, based on the imaging data, when the tissue block has been sufficiently faced by the microtome, and to determine, based on the imaging data, a depth profile of the tissue block to remove a sufficient amount of the embedding material to expose the tissue sample to a predetermined criteria, wherein the depth profile comprises a thickness of the embedding material to be removed to expose the tissue sample to the predetermined criteria;
wherein the illumination system is configured to illuminate the tissue block with structured light.
4. A histology system comprising:
a microtome configured to progressively remove one or more sections from a tissue block, the tissue block comprising a tissue sample embedded in an embedding material; and
a vision system associated with the microtome and comprising:
an illumination system configured to illuminate the tissue block comprising the tissue sample embedded in the embedding material;
an imaging system configured to image the tissue block to generate imaging data associated with the tissue block; and
a processor in communication with the vision system, the processor being programed to receive the imaging data and determine, based on the imaging data, when the tissue block has been sufficiently faced by the microtome, to cause the vision system to image the tissue block, prior to removing the one or more sections, to generate a baseline imaging data of the tissue sample; to cause the vision system to image the one or more sections progressively removed from the tissue block to generate the imaging data associated with the one or more sections; and to compare the imaging data associated with the one or more sections with the baseline imaging data to determine when the tissue sample has been sufficiently exposed;
wherein the illumination system is configured to illuminate the tissue block with structured light.
5. The histology system of claim 1 , wherein the structured light and light generated by the tissue sample are returned to the vision system to be used to determine at least one of an outline or cross-sectional area of the tissue sample, a depth profile of the tissue block; a thickness of an embedding material to be removed.
6. The histology system of claim 1 ,
wherein the structured light illuminates the tissue block in a predetermined pattern, and
wherein the predetermined pattern is one or more of a spatially structured pattern, a geometrically structured pattern, a grid, stripes, or concentric circles.
7. The histology system of claim 1 , wherein the structured light is configured to simultaneously illuminate the tissue block with light having different wavelengths in a same or predominantly the same intensity range and has different predetermined wavelengths within that intensity range.
8. The histology system of claim 3 , wherein the processor is further programed to determine when the tissue block has been sufficiently faced by recognizing an amount of exposed tissue sample.
9. The histology system of claim 3 , further comprising a transfer medium configured to transfer the one or more sections from the microtome to one or more slides.
10. The histology system of claim 9 , wherein the processor is further programmed to compare the one or more sections on the tissue block, on the transfer medium, or on the one or more slides to a baseline imaging data generated by imaging the tissue block with UV light prior to removing the one or more sections from the tissue block.
11. The histology system of claim 4 , wherein the processor is further programed to determine when the tissue block has been sufficiently faced by recognizing an amount of exposed tissue sample.
12. The histology system of claim 4 , further comprising a transfer medium configured to transfer the one or more sections from the microtome to one or more slides.
13. The histology system of claim 12 , wherein the processor is further programmed to compare the one or more sections on the tissue block, on the transfer medium, or on the one or more slides to a baseline imaging data generated by imaging the tissue block with UV light prior to removing the one or more sections from the tissue block.