Free-breathing MRI with motion compensation

1. A method for acquiring magnetic resonance imaging (MRI) data with respiratory motion compensation using one or more motion signals, the method comprising:

acquiring, using an MM scanner, a plurality of gradient-delay-corrected radial readout views of a subject using a free-breathing multi-echo pulse sequence, each of the plurality of gradient-delay-corrected radial readout views associated with a respective one of a plurality of azimuthal angles;

sampling, using an image data processor, a data point of each of the plurality of gradient-delay-corrected radial readout views to yield a plurality of data points, the plurality of data points defining a self-gating signal;

using the self-gating signal and the image data processor to determine a respiratory motion state corresponding to each of the plurality of gradient-delay-corrected radial readout views;

using the determined respiratory motion states and the image data processor to correct respiratory motion bias in the gradient-delay-corrected radial readout views and to yield gradient-delay-corrected and motion-compensated multi-echo data;

reconstructing, using the image data processor, one or more images using the gradient-delay-corrected and motion-compensated multi-echo data; and

outputting, using a display processor, the one or more images for display on an operator interface.

2. A system for acquiring magnetic resonance imaging data with respiratory motion compensation using a self-gating signal, the system comprising:

an imaging device configured to acquire a plurality of gradient-delay-corrected radial readout views of a subject using a free-breathing multi-echo pulse sequence, each of the plurality of gradient-delay-corrected radial readout views associated with a respective one of a plurality of azimuthal angles;

one or more computers communicably coupled to the imaging device and comprising memory comprising instructions stored thereon and one or more processors coupled to the memory and configured to execute the stored instructions to:

sample a data point of each of the gradient-delay-corrected radial readout views, the data points defining a self-gating signal;

use the self-gating signal to determine a respiratory motion state corresponding to each of the plurality of gradient-delay-corrected radial readout views;

use the determined respiratory motion states to correct respiratory motion bias in the gradient-delay-corrected radial readout views and to yield gradient-delay-corrected and motion-compensated multi-echo data;

reconstruct one or more images using the gradient-delay-corrected and motion-compensated multi-echo data; and

output the one or more images for display via a graphical user interface (GUI).

3. A method for acquiring magnetic resonance imaging data with respiratory motion compensation using one or more motion signals, the method comprising:

acquiring, using an MM scanner, a plurality of gradient-delay-corrected radial readout views, each of the plurality of gradient-delay-corrected radial readout views associated with a respective one of a plurality of azimuthal angles;

acquiring, using an image data processor, a data point from each of the plurality of gradient-delay-corrected radial readout views, the acquired data points defining a motion signal describing motion of a subject;

using the motion signal and the image data processor to determine a respiratory motion state corresponding to each of the plurality of gradient-delay-corrected radial readout views;

using the respiratory motion states and the image data processor to correct respiratory motion bias in the gradient-delay-corrected radial readout views and to yield gradient-delay-corrected and motion-compensated multi-echo data;

reconstructing, using the image data processor, one or more images using the gradient-delay-corrected and motion-compensated multi-echo data;

measuring, using the image data processor, one or more biomarker values using the one or more images; and

displaying the one or more biomarker values on a display device and in a graphical user interface (GUI).

4. The method of claim 1 , further comprising:

measuring, using the image data processor, one or more biomarker values using the one or more images; and

displaying, using the display processor, the biomarker values on the operative interface in a graphical user interface (GUI).

5. The method of claim 4 , wherein the biomarker values comprise a Proton-Density Fat Fraction (PDFF) value and an effective transverse relaxation rate (R 2 *) value.

6. The method of claim 4 , wherein the biomarker values comprise one or more of a mapping of T 1 relaxation time, T 2 relaxation time, and tissue stiffness.

7. The method of claim 1 , wherein the gradient-delay-corrected radial readout views are acquired using a golden-angle ordering scheme.

8. The method of claim 1 , wherein the free-breathing multi-echo pulse sequence is a gradient-echo (GRE) stack-of-radial sequence.

9. The method of claim 1 , wherein the free-breathing multi-echo pulse sequence is a stack-of-radial turbo spin echo sequence.

10. The method of claim 1 , wherein the free-breathing multi-echo pulse sequence is a stack-of-spiral sequence.

11. The method of claim 1 , wherein the free-breathing multi-echo pulse sequence is a 3D radial sequence.

12. The method of claim 1 , wherein the free-breathing multi-echo pulse sequence is a 3D cones sequence.

13. The system of claim 2 , further comprising an operator interface for presenting the one or more images in the GUI.

14. The system of claim 2 ,

wherein the one or more processors are further configured to execute the stored instructions to reconstruct one or more biomarker maps using the one or more images; and

wherein the system further comprises an operator interface for presenting the one or more biomarker maps in the GUI.

15. The method of claim 3 , wherein the biomarker values comprise one or more of a Proton-Density Fat Fraction (PDFF) value and an effective transverse relaxation rate (R 2 *) value or a mapping of one or more of T 1 relaxation time, T 2 relaxation time, or tissue stiffness.

16. The method of claim 3 , wherein the gradient-delay-corrected radial readout views are acquired using a golden-angle ordering scheme.

17. The system of claim 2 , wherein the free-breathing multi-echo pulse sequence is a gradient-echo (GRE) stack-of-radial sequence, a stack-of-radial turbo spin echo sequence, a stack-of-spiral sequence, a 3D radial sequence, or a 3D cones sequence.

18. The system of claim 2 , wherein the imaging device is further configured to generate the free-breathing multi-echo pulse sequence by:

acquiring calibration data from positive and negative gradient calibrations in both the x and y directions along a k-space trajectory; and

cross-correlating the calibration data to calculate k-space sample shifts in kx and ky directions, respectively.

19. The system of claim 2 , wherein the imaging device is further configured to generate the free-breathing multi-echo pulse sequence by:

acquiring radial readout views for all kz increments before rotating to a subsequent azimuthal angle; and

correcting the k-space trajectory for the radial readout views along each azimuthal angle using the k-space sample shifts.