Small molecules for cancer therapy that reduce the expression of transcription factors KLF5 and EGR-1
The present disclosure provides compounds of formula (I), as described herein, their pharmaceutically acceptable salts, and their pharmaceutical compositions, which are effective in reducing the expression level of KLF5 or EGR1 in a living cell, and for the treatment of tumors and colorectal cancer in a human patient.
1 . A compound of formula (I), or a pharmaceutically acceptable salt thereof:
wherein
X 1 is selected from the group consisting of NH, CH 2 , CH-alkyl, and N-alkyl;
Y is selected from the group consisting of CH 2 , CH-alkyl, and a bond;
R 1 is of formula
wherein
X 2 is selected from the group consisting of H and 1-3 independent instances of Cl, Br, I, F, SO 2 NH 2 , SO 2 N(Me) 2 , SO 2 NH-alkyl, SO 2 Me, (C═O)NH 2 , (C═O)NMe 2 , (C—O)NH-alkyl, O-alkyl, and SMe;
Z is selected from the group consisting of H, CN, CF 3 , SO 2 Me, SO 2 NH 2 , SO 2 NH-alkyl, SO 2 N(alkyl) 2 , wherein the alkyl groups and the nitrogen atom to which they are bonded optionally form a ring further comprising 0 or 1 heteroatoms selected from the group consisting of O, S, NH, and N-alkyl, C(O)Me, CO 2 -alkyl, C(O)—NH-alkyl, and C(O)N(Me)-alkyl;
R 2 is selected from the group consisting of H, alkyl, and a side chain group of a natural amino acid;
R 3 and the nitrogen atoms to which it is attached together comprise a cyclic or acyclic diamine of any one of the following formulae:
wherein a wavy line indicates a position of bonding; and,
R 4 is alkyl.
2 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein
X 1 is NH or N-alkyl;
Y is CH 2 or is a bond;
R 1 is of formula
wherein
X 2 is selected from the group consisting of H and 1-2 independent instances of F, Cl, Br, SO 2 N(Me) 2 , SO 2 NHMe, SO 2 NH-alkyl, SO 2 Me, (C═O)NHMe, (C═O)NMe 2 , (C═O)NH-alkyl, and O-alkyl;
Z is selected from the group consisting of H, CN, CF 3 , SO 2 Me, SO 2 NH-alkyl, SO 2 N(alkyl) 2 , wherein the alkyl groups and the nitrogen atom to which they are bonded optionally form a ring further comprising 0 or 1 heteroatoms selected from the group consisting of O, NH, and N-alkyl, C(O)Me, C(O)—NH-alkyl, and C(O)N(Me)-alkyl; and
R 3 and the nitrogen atoms to which it is attached together comprise a cyclic diamine of any one of the following formulae:
wherein a wavy line indicates a position of bonding.
3 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 1 is NH.
4 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 1 is NH and R 2 is H.
5 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 1 is NH, R 2 is H, and the group N—R 3 —N is a piperazine ring.
6 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 1 is NH, R 2 is H, the group N—R 3 —N is a piperazine ring, and R 4 is Me.
7 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 1 is NH, R 2 is H, the group N—R 3 —N is a piperazine ring, R 4 is Me, and X 2 is one or two instances selected from the group consisting of F, Cl, and SO 2 Me.
8 . A compound, or a pharmaceutically acceptable salt thereof, selected from the following table:
9 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, of formula (9):
10 . A method of reducing an expression level of KLF5 or EGR-1 in a living cell, comprising contacting the cell with an effective amount of a compound, or a pharmaceutically acceptable salt thereof, of claim 1 .
11 . A method of treatment of tumors in a patient that are comprised of KLF5-expressing cancer cells, comprising administering to the patient an effective dose of a compound, or a pharmaceutically acceptable salt thereof, of claim 1 .
12 . A method of treatment of colorectal cancer in a human patient, comprising administering to the patient an effective dose of a compound, or a pharmaceutically acceptable salt thereof, of claim 1 .
13 . A pharmaceutical composition comprising a compound, or a pharmaceutically acceptable salt thereof, of claim 1 and a pharmaceutically acceptable carrier.
14 . A pharmaceutical composition comprising a compound, or a pharmaceutically acceptable salt thereof, of formula (9):
15 . The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein X 2 is selected from the group consisting of H and 1-2 independent instances of F, Cl, Br, SO 2 N(Me) 2 , SO 2 NHMe, SO 2 Me, (C═O)NHMe, (C═O)NMe 2 , and O-alkyl.