ENGINEERED HUMAN-ENDOGENOUS VIRUS-LIKE PARTICLES AND METHODS OF USE THEREOF FOR DELIVERY TO CELLS
Human-derived virus-like particles (heVLPs), comprising a membrane comprising a phospholipid bilayer with one or more HERV-derived envelope proteins on the external side; one or more HERV-derived GAG proteins in the heVLP core, and a cargo molecule, e.g., a biomolecule and/or chemical cargo molecule, disposed in the core of the heVLP on the inside of the membrane, wherein the heVLP does not comprise a gag protein, except for gag proteins that are encoded in the human genome or gag proteins that are encoded by a consensus sequence that is derived from gag proteins found in the human genome, and methods of use thereof for delivery of the cargo molecule to cells.
1 . An engineered human-derived virus-like particle (heVLP), comprising: a membrane comprising a phospholipid bilayer with one or more HERV-derived ENV/glycoprotein(s) on the external side; a HERV-derived GAG protein in the heVLP core, and a cargo disposed in the core of the heVLP on the inside of the membrane, wherein the cargo is fused to a human-endogenous GAG or other plasma membrane recruitment domain, and the heVLP does not comprise a non-human gag and/or pol protein.
2 . The heVLP of claim 1 , wherein the cargo is a therapeutic or diagnostic protein or nucleic acid encoding a therapeutic or diagnostic protein, or a small molecule.
3 . The heVLP of claim 1 , wherein the cargo is a gene editing reagent.
4 . The heVLP of claim 1 , wherein the gene editing reagent comprises a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; a nucleic acid encoding a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; or a riboucleoprotein complex (RNP) comprising a CRISPR-based genome editing or modulating protein.
5 . The heVLP of claim 4 , wherein the gene editing reagent is selected from the proteins listed in Tables 2, 3, 4 & 5.
6 . The heVLP of claim 4 , wherein the gene editing reagent comprises a CRISPR-based genome editing or modulating protein, and the heVLP further comprises one or more guide RNAs that bind to and direct the CRISPR-based genome editing or modulating protein to a target sequence.
7 . The heVLP of claim 1 , wherein the cargo comprises a fusion to a human-endogenous GAG or other plasma membrane recruitment domain, preferably as shown in Table 6.
8 . A method of delivering a cargo molecule to a target cell, optionally a cell in vivo or in vitro, the method comprising contacting the cell with the heVLP of claim 1 comprising the cargo molecule, preferably wherein the cargo molecule is a biomolecule and/or chemical.
9 . A method of producing a heVLP comprising one or more cargo molecules, the method comprising:
providing a cell expressing one or more HERV-derived envelope proteins, one or more HERV-derived GAG proteins, and the one or more cargo molecules, wherein the cell does not express a gag and/or pol protein, except for gag proteins that are encoded in the human genome or gag proteins that are encoded by a consensus sequence that is derived from gag proteins found in the human genome; and
maintaining the cell under conditions such that the cells produce heVLPs.
10 . The method of claim 9 , further comprising harvesting and optionally purifying and/or concentrating the produced heVLPs.
11 . The method of claim 9 , wherein the cargo molecule is a therapeutic or diagnostic protein or nucleic acid encoding a therapeutic or diagnostic protein, or a small molecule therapeutic or diagnostic agent.
12 . The method of claim 9 , wherein the cargo molecule is a gene editing reagent.
13 . The method of claim 9 , wherein the gene editing reagent comprises a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; a nucleic acid encoding a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; or a riboucleoprotein complex (RNP) comprising a CRISPR-based genome editing or modulating protein.
14 . The method of claim 13 , wherein the gene editing reagent is selected from the proteins listed in Tables 2, 3, 4 & 5.
15 . The method of claim 13 , wherein the gene editing reagent comprises a CRISPR-based genome editing or modulating protein, and the heVLP further comprises one or more guide RNAs that bind to and direct the CRISPR-based genome editing or modulating protein to a target sequence.
16 . The method of claim 9 , wherein the cargo molecule comprises a fusion to a human-endogenous GAG or other plasma membrane recruitment domain, preferably as shown in Table 6.
17 . A cell that expresses, in combination:
one or more HERV-derived envelope proteins;
one or more HERV-derived GAG proteins; and
a cargo molecule, preferably fused to a human endogenous GAG or other plasma membrane recruitment domain,
wherein the cell does not express non-human gag protein.
18 . The cell of claim 17 , wherein the cargo molecule is a therapeutic or diagnostic protein or nucleic acid encoding a therapeutic or diagnostic protein.
19 . The cell of claim 17 , wherein the cargo molecule is a gene editing reagent.
20 . The cell of claim 17 , wherein the gene editing reagent comprises a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; a nucleic acid encoding a zinc finger (ZF), transcription activator-like effector (TALE), and/or CRISPR-based genome editing or modulating protein; or a riboucleoprotein complex (RNP) comprising a CRISPR-based genome editing or modulating protein.
21 . The cell of claim 20 , wherein the gene editing reagent is selected from the proteins listed in Tables 2, 3, 4 & 5.
22 . The cell of claim 20 , wherein the gene editing reagent comprises a CRISPR-based genome editing or modulating protein, and the heVLP further comprises one or more guide RNAs that bind to and direct the CRISPR-based genome editing or modulating protein to a target sequence.
23 . The cells of claim 17 , wherein the cargo molecule comprises a fusion to a human-endogenous GAG or other plasma membrane recruitment domain, preferably as shown in Table 6.
24 . The cells of claim 17 , wherein the cells are primary or stable human cell lines.
25 . The cells of claim 24 , which are Human Embryonic Kidney (HEK) 293 cells, HEK293 T cells, or BeWo cells.