IP Library Granted Patent US 12,071,442
Granted Patent B2
US 12,071,442 · App. 17/656,924 · Granted Aug 27, 2024

Substituted pyrrolo[3,4-c]pyridines as HPK1 antagonists

Inventors: Neelu Kaila (Lexington, MA); Ian Linney (Saffron Walden, GB); Stuart Ward (Saffron Walden, GB); Grant Wishart (Saffron Walden, GB); Benjamin Whittaker (Saffron Walden, GB); Alexandre Cote (West New York, NJ); Jeremy Robert Greenwood (Brooklyn, NY); Abba Leffler (Bronx, NY)
Assignee: Nimbus Saturn, Inc.
C07D519/00C07D487/04
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Quick Facts
Patent No.
US 12,071,442
App. No.
17/656,924
Granted
Aug 27, 2024
Kind
B2
Abstract

The present invention provides compounds of formula I, compositions thereof, and methods of using the same for the inhibition of HPK1, and the treatment of HPK1-mediated disorders.

Claims (95)

1. A compound of formula I:

or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof,

wherein:

X is —NR—;

R 1 is a 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 8- to 10-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl;

wherein the 3- to 7-membered carbocyclyl or 3- to 7-membered heterocyclyl is monocyclic and saturated or partially unsaturated;

wherein the 8- to 10-membered heterocyclyl is bicyclic and saturated or partially unsaturated;

wherein the 5- or 6-membered heteroaryl is monocyclic;

wherein the 3- to 7-membered heterocyclyl contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S;

wherein the 8- to 10-membered heterocyclyl or 5- or 6-membered heteroaryl contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 8- to 10-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl is substituted with q independently selected R C substituents;

R 2 is a 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 6- to 11-membered cyclyl, phenyl, or 5- or 6-membered heteroaryl;

wherein the 3- to 7-membered carbocyclyl or 3- to 7-membered heterocyclyl is monocyclic and saturated or partially unsaturated;

wherein the 6- to 11-membered cyclyl is (a) bicyclic, (b) fused, bridged, or spirocyclic, and (c) saturated, partially unsaturated, or fully unsaturated;

wherein the 5- or 6-membered heteroaryl is monocyclic;

wherein the 3- to 7-membered heterocyclyl contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S;

wherein the 6- to 11-membered cyclyl contains 0, 1, 2, or 3 heteroatoms independently selected from the group consisting of N, O, and S;

wherein the 5- or 6-membered heteroaryl contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 6- to 11-membered cyclyl, phenyl, or 5- or 6-membered heteroaryl is substituted with q independently selected R C substituents;

each R 3 is independently H or C 1-6 aliphatic, wherein the C 1-6 aliphatic is substituted with s independently selected R D substituents;

each R C is independently halogen, CN, NO 2 , C 1-6 aliphatic, C(O)R, C(O)NR 2 , C(O)NROR, C(O)OR, NR 2 , NRC(NR)NR 2 , NRCN, NRC(O)R, NRC(O)NR 2 , NRC(O)OR, NRNR 2 , NRS(O)R, NRS(O) 2 R, NRS(O) 2 NR 2 , N═S(O)R 2 , OR, OC(O)R, OC(O)NR 2 , ═O, P(O)R 2 , P(O)RNR 2 , P(O)ROR, SR, S(O)R, S(O)NR 2 , S(NR)(O)R, S(O) 2 R, S(O) 2 NR 2 , 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 5- to 8-membered cyclyl, 6- to 11-membered cyclyl, 6- to 11-membered heterocyclyl, phenyl, naphthalenyl, 5- or 6-membered heteroaryl, or 8- to 10-membered heteroaryl;

wherein each 3- to 7-membered carbocyclyl or 3- to 7-membered heterocyclyl is independently monocyclic and saturated or partially unsaturated;

wherein each 5- to 8-membered cyclyl is independently (a) bicyclic, (b) bridged, and (c) saturated or partially unsaturated;

wherein each 6- to 11-membered cyclyl is independently spirocyclic and saturated or partially unsaturated;

wherein each 6- to 11-membered heterocyclyl is independently bicyclic and saturated or partially unsaturated;

wherein each 5- or 6-membered heteroaryl is independently monocyclic;

wherein each 8- to 10-membered heteroaryl is independently bicyclic;

wherein each 3- to 7-membered heterocyclyl independently contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, P, Si, and S;

wherein each 5- to 8-membered cyclyl and 6- to 11-membered cyclyl independently contains 0, 1, 2, or 3 heteroatoms independently selected from the group consisting of N, O, and S;

wherein each 6- to 11-membered heterocyclyl independently contains 1, 2, or 3 heteroatoms independently selected from the group consisting of N, O, and S;

wherein each 5- or 6-membered heteroaryl independently contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S;

wherein each 8- to 10-membered heteroaryl independently contains 1, 2, 3, 4, or 5 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein each C 1-6 aliphatic, 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 5- to 8-membered cyclyl, 6- to 11-membered cyclyl, 6- to 11-membered heterocyclyl, phenyl, naphthalenyl, 5- or 6-membered heteroaryl, or 8- to 10-membered heteroaryl is independently substituted with r independently selected R substituents and s independently selected R D substituents;

each R is independently H, halogen, CN, C 1 0.6 aliphatic, 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 5- to 8-membered cyclyl, 6- to 10-membered cyclyl, 6- to 11-membered heterocyclyl, 7- to 12-membered heterocyclyl, phenyl, naphthalenyl, 5- or 6-membered heteroaryl, or 8- to 10-membered heteroaryl;

wherein each 3- to 7-membered carbocyclyl or 3- to 7-membered heterocyclyl is independently monocyclic and saturated or partially unsaturated;

wherein each 5- to 8-membered cyclyl is independently (a) bicyclic, (b) bridged, and (c) saturated or partially unsaturated;

wherein each 6- to 10-membered cyclyl is independently spirocyclic and saturated or partially unsaturated;

wherein each 6- to 11-membered heterocyclyl and 7- to 12-membered heterocyclyl is independently bicyclic and saturated or partially unsaturated;

wherein each 5- or 6-membered heteroaryl is independently monocyclic;

wherein each 8- to 10-membered heteroaryl is independently bicyclic;

wherein each 3- to 7-membered heterocyclyl independently contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S;

wherein each 5- to 8-membered cyclyl and 6- to 10-membered cyclyl independently contains 0, 1, 2, or 3 heteroatoms independently selected from the group consisting of N, O, and S;

wherein each 6- to 11-membered heterocyclyl independently contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein each 7- to 12-membered heterocyclyl, 5- or 6-membered heteroaryl, and 8- to 10-membered heteroaryl independently contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein each C 1-6 aliphatic, 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, 5- to 8-membered cyclyl, 6- to 10-membered cyclyl, 6- to 11-membered heterocyclyl, 7- to 12-membered heterocyclyl, phenyl, naphthalenyl, 5- or 6-membered heteroaryl, or 8- to 10-membered heteroaryl is independently substituted with s independently selected R D substituents; or

any two R substituents, together with the nitrogen heteroatom to which they are attached, independently forms a 4- to 7-membered heterocyclyl, 7- to 12-membered heterocyclyl, or 8- to 10-membered heteroaryl;

wherein each 4- to 7-membered heterocyclyl is independently monocyclic and saturated, partially unsaturated, or fully saturated;

wherein each 7- to 12-membered heterocyclyl is independently bicyclic and saturated or partially unsaturated;

wherein each 8- to 10-membered heteroaryl is independently bicyclic;

wherein each 4- to 7-membered heterocyclyl, 7- to 12-membered heterocyclyl, and 8- to 10-membered heteroaryl optionally and independently contains 1, 2, or 3 additional heteroatoms independently selected from the group consisting of N, O, and S; and

wherein each 4- to 7-membered heterocyclyl, 7- to 12-membered heterocyclyl, and 8- to 10-membered heteroaryl is independently substituted with s independently selected R D substituents;

each R D is independently halogen, CN, NO 2 , C(O)R, C(O)NR 2 , C(O)NROR, C(O)OR, NR 2 , NRC(NR)NR 2 , NRCN, NRC(O)R, NRC(O)NR 2 , NRC(O)OR, NRNR 2 , NRS(O)R, NRS(O) 2 R, NRS(O) 2 NR 2 , N═S(O)R 2 , OR, OC(O)R, OC(O)NR 2 , ═O, P(O)R 2 , P(O)RNR 2 , P(O)ROR, SR, S(O)R, S(O)NR 2 , S(NR)(O)R, S(O) 2 R, or S(O) 2 NR 2 ;

each q is independently 0, 1, 2, 3, or 4;

r is 0, 1, 2, 3, or 4; and

s is 0, 1, 2, 3, or 4.

2. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein X is —NH—.

3. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 1 is 3- to 7-membered heterocyclyl, 8- to 10-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl;

wherein the 3- to 7-membered heterocyclyl is monocyclic and saturated or partially unsaturated;

wherein the 8- to 10-membered heterocyclyl is bicyclic and saturated or partially unsaturated;

wherein the 5- or 6-membered heteroaryl is monocyclic;

wherein the 3- to 7-membered heterocyclyl contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S;

wherein the 8- to 10-membered heterocyclyl or 5- or 6-membered heteroaryl contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the 3- to 7-membered heterocyclyl, 8- to 10-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl is substituted with q independently selected R C substituents.

4. The compound of claim 3 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 1 is phenyl or 5- or 6-membered heteroaryl;

wherein the 5- or 6-membered heteroaryl is monocyclic;

wherein the 5- or 6-membered heteroaryl contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the phenyl or 5- or 6-membered heteroaryl is substituted with q independently selected R C substituents.

5. The compound of claim 3 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 1 is phenyl, pyrazolyl, pyridinyl, pyrimidinyl, or pyrazinyl, wherein the phenyl, pyrazolyl, pyridinyl, pyrimidinyl, or pyrazinyl is substituted with q independently selected R C substituents.

6. The compound of claim 5 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 1 is:

7. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 1 is:

8. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl;

wherein the 3- to 7-membered carbocyclyl or 3- to 7-membered heterocyclyl is monocyclic and saturated or partially unsaturated;

wherein the 5- or 6-membered heteroaryl is monocyclic;

wherein the 3- to 7-membered heterocyclyl contains 1 or 2 heteroatoms independently selected from the group consisting of N, O, and S;

wherein the 5- or 6-membered heteroaryl contains 1, 2, 3, or 4 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the 3- to 7-membered carbocyclyl, 3- to 7-membered heterocyclyl, phenyl, or 5- or 6-membered heteroaryl is substituted with q independently selected R C substituents.

9. The compound of claim 8 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is cyclopropyl, tetrahydropyranyl, morpholinyl, phenyl, pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, pyridinyl, pyridazinyl, or pyrimidinyl, wherein the cyclopropyl, tetrahydropyranyl, morpholinyl, phenyl, pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, pyridinyl, pyridazinyl, or pyrimidinyl is substituted with q independently selected R C substituents.

10. The compound of claim 8 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is:

11. The compound of claim 8 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is:

12. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is a 6- to 11-membered cyclyl;

wherein the 6- to 11-membered cyclyl is (a) bicyclic, (b) fused, bridged, or spirocyclic, and (c) saturated, partially unsaturated, or fully unsaturated;

wherein the 6- to 11-membered cyclyl contains 0, 1, 2, or 3 heteroatoms independently selected from the group consisting of N, O, and S; and

wherein the 6- to 11-membered cyclyl is substituted with q independently selected R C substituents.

13. The compound of claim 12 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is a 9-membered heterocyclyl;

wherein the 9-membered heterocyclyl is (a) bicyclic, (b) fused, and (c) saturated, partially unsaturated, or fully unsaturated;

wherein the 9-membered heterocyclyl contains 1, 2, or 3 N heteroatoms; and

wherein the 9-membered heterocyclyl is substituted with q independently selected R C substituents.

14. The compound of claim 13 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is:

15. The compound of claim 13 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein R 2 is:

16. The compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof, wherein each R 3 is independently H or C 1-4 aliphatic, wherein the C 1-4 aliphatic is substituted with s independently selected R D substituents.

17. The compound of claim 1 , or a stereoisomer thereof, wherein the compound, or stereoisomer thereof, is selected from the group consisting of:

or a pharmaceutically acceptable salt or tautomer thereof.

18. A pharmaceutical composition comprising a pharmaceutically acceptable carrier, adjuvant, or vehicle and a compound of claim 1 , or a pharmaceutically acceptable salt, stereoisomer, or tautomer thereof.

19. A compound:

or a pharmaceutically acceptable salt or tautomer thereof.

Assignments (8)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: KAILA, NEELU
To: NIMBUS DISCOVERY, INC.
Reel/Frame 066606/0026 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: LINNEY, IAN; WARD, STUART; WHITTAKER, BENJAMIN; WISHART, GRANT
To: CHARLES RIVER DISCOVERY RESEARCH SERVICES UK LIMITED
Reel/Frame 066606/0054 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: CHARLES RIVER DISCOVERY RESEARCH SERVICES UK LIMITED
To: CHARLES RIVER LABORATORIES, INC.
Reel/Frame 066606/0130 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: CHARLES RIVER LABORATORIES, INC.
To: NIMBUS DISCOVERY, INC.
Reel/Frame 066606/0239 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: GREENWOOD, JEREMY ROBERT; COTE, ALEXANDRE; LEFFLER, ABBA
To: SCHRÖDINGER, INC.
Reel/Frame 066606/0714 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: SCHRÖDINGER, INC.
To: SCHRÖDINGER, L.L.C.
Reel/Frame 066606/0866 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: SCHRÖDINGER, L.L.C.
To: NIMBUS DISCOVERY, INC.
Reel/Frame 066606/0892 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 29, 2024
From: NIMBUS DISCOVERY, INC.
To: NIMBUS SATURN, INC.
Reel/Frame 066607/0050 →
Continuity (3)
Provisional Application 63182313 · Apr 30, 2021
Provisional Application 63167455 · Mar 29, 2021
Related Publication 20220363695A1 · Nov 17, 2022