IP Library Granted Patent US 12,286,630
Granted Patent B2
US 12,286,630 · App. 17/732,757 · Granted Apr 29, 2025

Treatment methods for muscular dystrophy

Inventors: Huadong Sun (Cambridge, MA); Lilly East (Cambridge, MA); Jon Tinsley (Cambridge, MA); Jake Elkins (Cambridge, MA)
Assignee: Sarepta Therapeutics, Inc.
C12N15/1138A61P21/00C12N15/113C12N2310/11C12N2310/3233
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Quick Facts
Patent No.
US 12,286,630
App. No.
17/732,757
Granted
Apr 29, 2025
Kind
B2
Abstract

New dosing regimens for treating muscular dystrophy in a patient suffering from Duchenne muscular dystrophy (DMD) with an antisense oligonucleotide conjugate that causes skipping of an exon in the human dystrophin gene are described. Also described is a method of treating a patient with an antisense oligomer CPP conjugate and a magnesium supplement.

Claims (52)

1. A method of treating a patient with Duchenne muscular dystrophy (DMD) in need thereof who has a mutation that is amenable to exon skipping, comprising administering to the patient an antisense oligomer conjugate of Formula (I):

or a pharmaceutically acceptable salt thereof,

wherein:

n is 1-40;

each Nu is a nucleobase, which, taken together, form a targeting sequence complementary to an exon annealing site in the dystrophin pre-mRNA;

T′ is a moiety selected from:

wherein

R 100 a cell-penetrating peptide, R 200 is hydrogen, and R 1 is C 1 -C 6 alkyl,

at a dose equivalent to the dose of the 6HCl salt of the conjugate according to the following schedule:

i) about 300 mg to about 700 mg, or about 900 mg to about 1200 mg, once every four weeks for a patient that weighs from about 10 kg to about 25 kg;

ii) about 600 mg to about 800 mg, or about 1000 mg to about 1300 mg, once every four weeks for a patient that weighs from about 25 kg to about 50 kg; or

iii) about 700 mg to about 900 mg, or about 1200 mg to about 1500 mg, once every four weeks for a patient that weighs from about 50 kg to about 100 kg;

to achieve a mean AUC

about 100 and about 200 ug·h/mL, or is between about 200 and about 500 ug·h/mL, and

wherein the method further comprises administering a magnesium supplement to the patient.

2. A method of treating a patient with Duchenne muscular dystrophy (DMD) in need thereof who has a mutation that is amenable to exon 51 skipping, comprising administering to the patient an antisense oligomer conjugate of Formula (I):

or a pharmaceutically acceptable salt thereof,

wherein:

n is 1-40;

each Nu is a nucleobase, which, taken together, form a targeting sequence complementary to an exon annealing site in the dystrophin pre-mRNA;

T′ is a moiety selected from:

wherein

R 100 a cell-penetrating peptide, R 200 is hydrogen, and R 1 is C 1 -C 6 alkyl,

at a dose equivalent to the dose of the 6HCl salt of the conjugate according to the following schedule:

i) about 300 mg to about 700 mg, or about 900 mg to about 1200 mg, once every four weeks for a patient that weighs from about 10 kg to about 25 kg;

ii) about 600 mg to about 800 mg, or about 1000 mg to about 1300 mg, once every four weeks for a patient that weighs from about 25 kg to about 50 kg; or

iii) about 700 mg to about 900 mg, or about 1200 mg to about 1500 mg, once every four weeks for a patient that weighs from about 50 kg to about 100 kg;

to achieve a mean AUC

about 100 and about 200 ug· h/mL, or between about 200 and about 500 ug·h/mL, and

wherein the method further comprises administering a magnesium supplement to the patient.

3. The method of claim 1 , wherein the conjugate, or a pharmaceutically acceptable salt thereof, is administered at a dose effective to provide a mean AUC of between about 100 and about 200 ug·h/mL.

4. The method of claim 1 , wherein the conjugate, or a pharmaceutically acceptable salt thereof, is administered at a dose effective to provide a mean AUC of between about 200 and about 500 ug·h/mL.

5. The method of claim 1 , wherein the cell-penetrating peptide is chosen from RXRRXRRXRRXR (SEQ ID NO: 18), RFFRFFRFFR (SEQ ID NO: 19), RXRRXRRXRRXRXB (SEQ ID NO: 20), RFFRFFRFFRG (SEQ ID NO: 21), RRRRRRG (SEQ ID NO: 22), RRRRRR (SEQ ID NO: 23), RRRRRG (SEQ ID NO: 24), or RRRRR (SEQ ID NO: 25), wherein R is arginine, X is 6-aminohexanoic acid, B is β-alanine, F is phenylalanine, and G is glycine.

6. The method of claim 5 , wherein the cell-penetrating peptide is chosen from RRRRRRG (SEQ ID NO: 22), RRRRRR (SEQ ID NO: 23), RRRRRG (SEQ ID NO: 24), or RRRRR (SEQ ID NO: 25), wherein R is arginine and G is glycine.

7. The method of claim 6 , wherein the cell-penetrating peptide is RRRRRRG (SEQ ID NO: 22), wherein R is arginine and G is glycine.

8. The method of claim 1 , wherein the antisense oligomer conjugate causes skipping of an exon in the human dystrophin gene.

9. The method of claim 8 , wherein the exon is chosen from exon 44, 45, 50, 51, 52, or 53.

10. The method of claim 9 , wherein the exon is chosen from exon 45, 51, or 53.

11. The method of claim 1 , wherein the antisense oligomer conjugate has Formula (III):

or a pharmaceutically acceptable salt thereof,

wherein each Nu is a nucleobase, which, taken together, form a targeting sequence that is complementary to an exon annealing site in the dystrophin pre-mRNA.

12. The method of claim 1 or claim 2 , wherein the antisense oligomer conjugate, or a pharmaceutically acceptable salt thereof, is administered at a dose equivalent to about 600 mg, or about 1100 mg, of the 6HCl salt of the conjugate once every four weeks to a patient that weighs from about 10 kg to about 25 kg.

13. The method of claim 1 or claim 2 , wherein the antisense oligomer conjugate, or a pharmaceutically acceptable salt thereof, is administered at a dose equivalent to about 650 mg, or about 1200 mg, of the 6HCl salt of the conjugate once every four weeks to a patient that weighs from about 25 kg to about 50 kg.

14. The method of claim 1 or claim 2 , wherein the antisense oligomer conjugate, or a pharmaceutically acceptable salt thereof, is administered at a dose equivalent to about 750 mg, or about 1400 mg, of the 6HCl salt of the conjugate once every four weeks to a patient that weighs from about 50 kg to about 100 kg.

15. The method of claim 1 or claim 2 , wherein the magnesium supplement is administered in an amount effective to provide a normal serum magnesium level.

16. The method of claim 1 or claim 2 , wherein the magnesium supplement is administered at a dose equivalent to about 100 to about 2400 mg magnesium oxide per day.

17. The method of claim 1 or claim 2 , wherein the magnesium supplement is administered at a dose equivalent to about 400 to about 2400 mg magnesium oxide per day.

18. The method of claim 1 or claim 2 , further comprising measuring serum magnesium level of said patient at two or more weeks from said administration.

19. The method of claim 1 or claim 2 , further comprising administering a second dose of magnesium supplement, at a dose based upon the measured serum magnesium level.

20. The method of claim 1 or claim 2 , wherein the magnesium supplement is chosen from magnesium oxide, magnesium citrate, magnesium carbonate, magnesium hydrogen phosphate, magnesium glycerophosphate, magnesium trisilicate, magnesium hydroxide, magnesium hydroxide carbonate, magnesium acetate, magnesium citrate, magnesium lactate, magnesium gluconate, magnesium chloride, magnesium aspartate, magnesium caprilate, magnesium ascorbate; magnesium taurate, magnesium malate, and magnesium diglycinate, magnesium pidulate, or magnesium sulfate.

21. The method of claim 1 or claim 2 , wherein the magnesium supplement is from magnesium oxide.

22. The method of claim 1 or claim 2 , wherein the antisense oligomer conjugate, or a pharmaceutically acceptable salt thereof, is administered in a pharmaceutical formulation, wherein the concentration of the conjugate in the formulation is about 50 mg/ml.

Assignments (2)
SECURITY INTEREST Recorded May 7, 2025
From: SAREPTA THERAPEUTICS, INC.
To: JPMORGAN CHASE BANK, N.A. AS ADMINISTRATIVE AGENT
Reel/Frame 071218/0445 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 14, 2025
From: SUN, HUADONG; EAST, LILLY; TINSLEY, JON; ELKINS, JAKE
To: SAREPTA THERAPEUTICS, INC.
Reel/Frame 069865/0358 →
Continuity (3)
Provisional Application 63182327 · Apr 30, 2021
Provisional Application 63249721 · Sep 29, 2021
Related Publication 20230193282A1 · Jun 22, 2023
References Cited (85)
US 5034506A · Summerton et al. · 1991 [cited by applicant]
US 5142047A · Summerton et al. · 1992 [cited by applicant]
US 5166315A · Summerton et al. · 1992 [cited by applicant]
US 5217866A · Summerton et al. · 1993 [cited by applicant]
US 5506337A · Summerton et al. · 1996 [cited by applicant]
US 5521063A · Summerton et al. · 1996 [cited by applicant]
US 5698685A · Summerton et al. · 1997 [cited by applicant]
US 6683173B2 · Dempcy et al. · 2004 [cited by applicant]
US 6692911B2 · Pack et al. · 2004 [cited by applicant]
US 7070807B2 · Mixson et al. · 2006 [cited by applicant]
US 7163695B2 · Mixson et al. · 2007 [cited by applicant]
US 8076476B2 · Reeves et al. · 2011 [cited by applicant]
US 8299206B2 · Fox et al. · 2012 [cited by applicant]
US 8969551B2 · Ueda · 2015 [cited by applicant]
US 9161948B2 · Hanson · 2015 [cited by applicant]
US 9840706B2 · Watanabe et al. · 2017 [cited by applicant]
US 9988629B2 · Wakayama et al. · 2018 [cited by applicant]
US 10683322B2 · Watanabe et al. · 2020 [cited by applicant]
US 10781448B2 · Watanabe et al. · 2020 [cited by applicant]
US 10851373B2 · Enya et al. · 2020 [cited by applicant]
US 10888578B2 · Passini et al. · 2021 [cited by applicant]
US 11000600B2 · Passini et al. · 2021 [cited by applicant]
US 11382981B2 · Passini et al. · 2022 [cited by applicant]
US 20120289457A1 · Hanson · 2012 [cited by applicant]
US 20130090465A1 · Matsuo et al. · 2013 [cited by applicant]
US 20210261963A1 · Uno et al. · 2021 [cited by applicant]
US 20220127606A1 · Okada et al. · 2022 [cited by applicant]
WO WO9402595A1 · 1994 [cited by applicant]
WO WO9610390A1 · 1996 [cited by applicant]
WO WO9610391A1 · 1996 [cited by applicant]
WO WO9610392A1 · 1996 [cited by applicant]
WO WO2004048570A1 · 2004 [cited by applicant]
WO WO2004097017A2 · 2004 [cited by applicant]
WO WO2009005793A2 · 2009 [cited by applicant]
WO WO2009127230A1 · 2009 [cited by applicant]
WO WO2012150960A1 · 2012 [cited by applicant]
WO WO2017062862A2 · 2017 [cited by applicant]
WO WO2018007475A1 · 2018 [cited by applicant]
WO WO2018091544A1 · 2018 [cited by applicant]
WO WO2018118627A1 · 2018 [cited by examiner]
WO WO2018129384A1 · 2018 [cited by applicant]
WO WO2019060775A1 · 2019 [cited by applicant]
WO WO2020004675A1 · 2020 [cited by applicant]
WO WO2020028832A1 · 2020 [cited by applicant]
WO WO2020089325A1 · 2020 [cited by applicant]
WO WO2020158792A1 · 2020 [cited by applicant]
WO WO2020214763A1 · 2020 [cited by examiner]
WO WO2020219820A1 · 2020 [cited by applicant]
Clinical Trial NCT03375255 , printed from ClinicalTrials.gov, NCT03375255, version 19, Mar. 26, 2020, pp. 1-13 (Year: 2020). [cited by examiner]
Aartsma-Rus, et al., “Theoretic applicability of antisense-mediated exon skipping for Duchenne muscular dystrophy mutations,” Hum. Mutat. 30(3):293-299, Wiley, United States (Mar. 2009). [cited by applicant]
Akhtar, S., et al., “Cellular uptake and intracellular fate of antisense oligonucleotides,” Trends Cell Biol 2(5):139-144, Cell Press, United States (May 1992). [cited by applicant]
Benner, S.A., and Sismour, A., “Synthetic biology,” Nat. Rev. Genet. 6(7):533-543, Nature Publishing Group, Germany (Jul. 2005). [cited by applicant]
Berge, S.M., et al., “Pharmaceutical Salts,” J. Pharm. Sci. 66(1):1-19, Elsevier, Netherlands (Jan. 1977). [cited by applicant]
Chiu, Y.L. and Rana, T.M., “siRNA function in RNAi: a chemical modification analysis,” RNA 9(9):1034-1048, Cold Spring Harbor Laboratory Press, United States (Sep. 2003). [cited by applicant]
Fletcher, S., et al., “Dystrophin isoform induction in vivo by antisense-mediated alternative splicing,” Mol. Ther. 18(6):1218-1223, Cell Press, United States (Jun. 2010). [cited by applicant]
Gurvich, O.L., et al., “DMD exon 1 truncating point mutations: amelioration of phenotype by alternative translation initiation in exon 6,” Hum. Mutat. 30(4):633-640, Wiley, United States (Apr. 2009). [cited by applicant]
Henricson, E., et al., “Percent-predicted 6-minute walk distance in duchenne muscular dystrophy to account for maturational influences,” PLOS Curr. 4:RRN122297, PLOS, United States (Jan. 2012). [cited by applicant]
Henry, A.A., and Romesberg, F.E., “Beyond A, C, G and T: augmenting nature's alphabet,” Curr. Opin. Chem. Biol. 7(6):727-733, Elsevier, Netherlands (Dec. 2003). [cited by applicant]
Hirao, I., “Unnatural base pair systems for DNA/RNA-based biotechnology,” Curr. Opin. Chem. Biol. 10(6):622-627, Elsevier, Netherlands (Dec. 2006). [cited by applicant]
Hong, Y., et al., “Model-based approach for optimization of atazanavir dose recommendations for HIV-infected pediatric patients,” Antimicrrob. Agents Chemother. 55(12):5746-5752, Oxford University Press, United Kingdom … [cited by applicant]
Ishiwata, H., et al., “Physical-chemistry characteristics and biodistribution of poly(ethylene glycol)-coated liposomes using poly(oxyethylene) cholesteryl ether,” Chem. Pharm. Bull. 43:1005-1011, Pharmaceutical Society… [cited by applicant]
Kool, E.T., “Replacing the nucleobases in DNA with designer molecules,” Acc. Chem. Res. 35(11):936-943, American Chemical Society, United States (Nov. 2002). [cited by applicant]
Krueger, A.T., et al., “Synthesis and properties of size-expanded DNAs: toward designed, functional genetic systems,” Acc. Chem. Res. 40(2):141-150, American Chemical Society, United States (Feb. 2007). [cited by applicant]
Lasic, D.D., et al., “The “Stealth” Liposome: A Prototypical Biomaterial,” Chem. Rev. 95(8):2601-2627, American Chemical Society, United States (1995). [cited by applicant]
Lasic, D.D., et al., “Liposomes revisited,” Science 267(5202):1275-1276, American Association for the Advancement of Science, United States (1995). [cited by applicant]
Limbach, P.A., et al., “Summary: the modified nucleosides of RNA,” Nucleic Acids Res. 22(12):2183-2196, Oxford University Press, United Kingdom (Jun. 1994). [cited by applicant]
Liu, Y., et al., “Cationic liposome-mediated intravenous gene delivery,” J. Biol. Chem. 270(42):24864-24870, Elsevier, Netherlands (Oct. 1995). [cited by applicant]
Mann, C.J., et al., “Improved antisense oligonucleotide induced exon skipping in the mdx mouse model of muscular dystrophy,” J. Gene. Med. 4(6):644-654, Wiley, United States (Dec. 2002). [cited by applicant]
McDonald, C.M., et al., “The 6-minute walk test in Duchenne/Becker muscular dystrophy: Longitudinal observations,” Muscle Nerve 42(6):966-974, Wiley, United States (Dec. 2010). [cited by applicant]
Monaco, A.P., et al., “An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus,” Genomics 2(1):90-95, Elsevier, Netherlands (Jan. 1988). [cited by applicant]
Oku, N., et al., “Real-time analysis of liposomal trafficking in tumor-bearing mice by use of positron emission tomography,” Biochim. Biophys. Acta. 1238:86-90, Elsevier, Netherlands (Aug. 1995). [cited by applicant]
Peacock, H., et al., “Nucleobase and ribose modifications control immunostimulation by a microRNA-122-mimetic RNA,” J. Am. Chem. Soc. 133(24):9200-9203, American Chemical Society, United States (Jun. 2011). [cited by applicant]
Revankar, T. and Rao, S., “DNA with Altered Bases,” in [cited by applicant]
Schroeder, U., et al., “Diffusion enhancement of drugs by loaded nanoparticles in vitro,” Prog. Neuropsychopharmacol. Biol. Psychiatry 23(5):941-949, Elsevier, Netherlands (Jul. 1999). [cited by applicant]
Summerton, J., et al., “Morpholino antisense oligomers: design, preparation, and properties,” Antisense Nucleic Acid Drug Dev. 7(3):185-195, Mary Ann Liebert, Inc., United States (Jun. 1997). [cited by applicant]
“The Glen Research Catalog,” www.glenresearch.com, accessed at https://www.glenresearch.com/site-content, accessed on Aug. 22, 2022. [cited by applicant]
International Search Report and Written Opinion for International Application No. PCT/US2022/026887, European Patent Office, Netherlands, mailed on Jul. 21, 2022, 12 pages. [cited by applicant]
Mukashyaka, M., et al., “Pharmacokinetic/Pharmacodynamic Modeling of a Cell-Penetrating Peptide Phosphorodiamidate Morpholino Oligomer in mdx Mice,” Pharm Res 38(10:1731-1745, Springer New York, United States (Oct. 2021… [cited by applicant]
Shabashvili, A., “Sarepta and Solid: the future of DMD therapy—Life Sciences Finance,” lifescifin.com, accessed at https://lifescifin.com/2021/05/20/sarepta-and-solid-the-future-of-dmd-therapy/, 11 pages. [cited by applicant]
Sarepta Therapeutics, Inc.: “Sarepta Therapeutics Reports Positive Clinical Results from Phase 2 Momentum Study of SRP-5051 in Patients with Duchenne Muscular Dystrophy Amenable to Skipping Exon 51,” accessed at https:/… [cited by applicant]
Amantana, A., et al., “Pharmacokinetics, biodistribution, stability and toxicity of a cell-penetrating peptide-morpholino oligomer conjugate,” Bioconjug Chem 18(4):1325-1331. American Chemical Society, United States (Au… [cited by applicant]
Greene, T.W., et al., Protective Groups in Organic Synthesis, Second Edition, John Wiley and Sons, United States (1991). [cited by applicant]
Dellorusso, C., et al., “Functional correction of adult mdx mouse muscle using gutted adenoviral vectors expressing full-length dystrophin,” Proc Natl Acad Sci USA 99(20):12979-12984, National Academy of Sciences, Unite… [cited by applicant]
Akhtar, S., Delivery Strategies for Antisense Oligonucleotide Therapeutics, First Edition, CRC Press, Boca Raton, Florida, United States (1995). [cited by applicant]
Emerich, D.F., et al., “Biocompatibility of poly (DL-lactide-co-glycolide) microspheres implanted into the brain,” Cell Transplant 8(1):47-58, Sage Publications, Inc., United States (Feb. 1999). [cited by applicant]