IP Library Granted Patent US 12,497,613
Granted Patent B2
US 12,497,613 · App. 17/767,190 · Granted Dec 16, 2025

Modified oligonucleotides

Inventors: Muthiah Manoharan (Cambridge, MA); Pawan Kumar (Cambridge, MA); Dhrubajyoti Datta (Cambridge, MA)
Assignee: Alnylam Pharmaceuticals, Inc.
C12N15/111A61K31/713C12N15/113
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Quick Facts
Patent No.
US 12,497,613
App. No.
17/767,190
Granted
Dec 16, 2025
Kind
B2
Abstract

One aspect of the present invention relates to double-stranded RNA (dsRNA) agent capable of inhibiting the expression of a target gene. Other aspects of the invention relate to pharmaceutical compositions comprising these dsRNA molecules suitable for therapeutic use, and methods of inhibiting the expression of a target gene by administering these dsRNA molecules, e.g., for the treatment of various disease conditions.

Claims (22)

1 . A double-stranded RNA (dsRNA) molecule capable of inhibiting the expression of a target gene, comprising a sense strand and an antisense strand, each strand having 14 to 40 nucleotides, wherein the antisense strand has sufficient complementarity to the target sequence to mediate RNA interference, wherein the dsRNA molecule comprises only one hexopyranose nucleotide and

wherein said hexopyranose nucleotide is in the antisense strand at one of positions 6, 7, 9, 12, 16, 20 and 21, counting from the 5′-end of the antisense strand or said hexopyranose nucleotide is in the sense strand at one of positions 3, 12, and 21, counting from the 5′-end,

wherein the dsRNA comprises a 2′-fluoro or 2′-OMe nucleotide in position complimentary to the hexopyranose nucleotide, and

wherein the hexopyranose nucleotide is selected from the group consisting of altriol nucleotide, glucopyranose nucleotide, mannopyranose nucleotide, allopyranose nucleotide, and galactopyranose nucleotide.

2 . The double-stranded RNA molecule of claim 1 , wherein the antisense strand comprises the hexopyranose nucleotide.

3 . The double-stranded RNA molecule of claim 1 , wherein the antisense strand comprises a hexopyranose nucleotide at one of positions 6, 7 and 16.

4 . The double-stranded RNA molecule of claim 3 , wherein the antisense strand comprises a hexopyranose nucleotide at one of positions 6 and 7.

5 . The double-stranded RNA molecule of claim 4 , wherein the antisense strand comprises a hexopyranose nucleoside at position 7.

6 . The double-stranded RNA molecule of claim 1 , wherein the sense strand comprises the hexopyranose nucleotide.

7 . The double-stranded RNA molecule of claim 1 , wherein the sense strand comprises the hexopyranose nucleotide at one of positions 3 and 12.

8 . The double-stranded RNA molecule of claim 1 , wherein the sense strand comprises the hexopyranose nucleotide at position 3.

9 . The double-stranded RNA molecule of claim 1 , wherein sense strand comprises a 5′-vinylphosphonate (VP) group.

10 . The double-stranded RNA molecule of claim 1 , wherein the hexopyranose nucleotide is selected from the group consisting of altriol nucleotide, glucopyranose nucleotide, and mannopyranose nucleotide.

11 . The double-stranded RNA molecule of claim 10 , wherein the hexopyranose nucleotide is selected an altriol nucleotide.

12 . A pharmaceutical composition comprising the dsRNA agent according to claim 1 alone or in combination with a pharmaceutically acceptable carrier or excipient.

13 . A gene silencing kit containing the dsRNA molecule of claim 1 .

14 . A method for silencing a target gene in a cell, the method comprising a step of introducing the dsRNA molecule of claim 1 into the cell.

15 . The dsRNA molecule of claim 1 , wherein the dsRNA comprises a ligand.

16 . The dsRNA molecule of claim 1 , wherein the dsRNA molecule does not comprise nucleotides other than hexopyranose, 2′-fluoro and 2-OMe nucleotides.

17 . The dsRNA molecule of claim 1 , wherein the sense and antisense strands are independently 19-25 nucleotides in length.

18 . The double-stranded RNA molecule of claim 15 , wherein the ligand is an ASGPR ligand.

19 . The double-stranded RNA molecule of claim 18 , wherein the ASGPR ligand is:

Assignments (2)
SECURITY INTEREST Recorded Oct 1, 2025
From: ALNYLAM PHARMACEUTICALS, INC.; SIRNA THERAPEUTICS, INC.
To: BANK OF AMERICA, N.A.
Reel/Frame 072996/0337 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 21, 2024
From: MANOHARAN, MUTHIAH; KUMAR, PAWAN; DATTA, DHRUBAJYOTI
To: ALNYLAM PHARMACEUTICALS, INC.
Reel/Frame 068356/0803 →
Continuity (2)
Provisional Application 62914010 · Oct 11, 2019
Related Publication 20220389419A1 · Dec 8, 2022
References Cited (18)
US 20080261905A1 · Herdewijn et al. · 2008 [cited by applicant]
US 20190136234A1 · Prakash · 2019 [cited by examiner]
JP 2009215241 · 2009 [cited by examiner]
JP 2009215241A · 2009 [cited by examiner]
WO 2003008576A2 · 2003 [cited by applicant]
WO WO2008025160A1 · 2008 [cited by examiner]
Elbashir et al. (The EMBO Journal, vol. 20, No. 23, pp. 6877-6888, 2001). [cited by examiner]
Matsuda et al. (ACS Chem. Biol. 2015, 10, 1181-1187). [cited by examiner]
Herdewijn (Chemistry & Biodiversity, 7, 2010, 1-59). [cited by examiner]
Prakash et al. (Bioorg. Med. Chem. Lett. 26 (2016) 2817-2820). [cited by examiner]
Fisher et al. (Nucleic Acids Research, 2007, vol. 35, No. 4, 1064-1074). [cited by examiner]
Bramsen et al., “A large-scale chemical modification screen identifies design rules to generate siRNAs with high activity, high stability and low toxicity.” Nucleic Acid Research 37(9): 2867-2881 (2009). [cited by applicant]
Hean et al., “Inhibition of hepatitis B virus replication in vivo using lipoplexes containing altritol-modified antiviral siRNAs.” Artificial DNA, PNA, & XNA 1(1): 17-26 (2010). [cited by applicant]
Kumar et al., “Chimeric siRNAs with chemically modified pentofuranose and hexopyranose nucleotides: altritol-nucleotide (ANA) containing GaINAc-siRNA conjugates: in vitro and in vivo RNAi activity and resistance to 5′—e… [cited by applicant]
ISR; PCT No. PCT/US2020/055301; Issued Apr. 15, 2021: pp. 4. [cited by applicant]
Bramsen et al. “A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects.” Nucleic acids research 38.17: 5761-5773 (2010). [cited by applicant]
Fisher, et al. “Inhibition of MDR1 expression with altritol-modified siRNAs.” Nucleic acids research 35.4: 1064-1074 (2007). [cited by applicant]
Springer et al. “GaINAc-siRNA conjugates: leading the way for delivery of RNAi therapeutics.” Nucleic acid therapeutics 28.3: 109-118 (2018). [cited by applicant]