IP Library Granted Patent US 12,509,736
Granted Patent B2
US 12,509,736 · App. 18/046,021 · Granted Dec 30, 2025

Genetic loci associated with disease resistance in soybeans

Inventors: Robert Arthur Dietrich (Durham, NC); Thomas Joseph Curley (Durham, NC); Becky Welsh Breitinger (Durham, NC); John Luther Dawson (Durham, NC); John Daniel Hipskind (Durham, NC); Qingli Liu (Durham, NC)
Assignee: Syngenta Crop Protection AG
C12Q1/6895A01H1/045A01H5/10A01H6/542C12N15/8282
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,509,736
App. No.
18/046,021
Granted
Dec 30, 2025
Kind
B2
Abstract

The present invention relates to methods and compositions for identifying, selecting and/or producing a Disease resistant soybean plant or germplasm using markers, genes and chromosomal intervals derived from Glycine tomentella PI441001, PI441008, PI446958, PI509501, PI583970, or PI483224. A soybean plant or germplasm that has been identified, selected and/or produced by any of the methods of the present invention is also provided. Disease resistant soybean seeds, plants and germplasms are also provided.

Claims (18)

1 . A method of producing a soybean plant having increased resistance to Asian soybean rust (ASR), the method comprising the steps of:

a) providing a first soybean plant comprising in its genome a chromosomal interval comprising SEQ ID NO: 2, wherein said first soybean plant has resistance to ASR;

b) crossing the first soybean plant with a second soybean plant not comprising said chromosomal interval to produce a progeny soybean plant;

c) selecting the progeny soybean plant by isolating a nucleic acid from said progeny plant and detecting within said nucleic acid the presence of an allele that associates with ASR resistance, wherein said allele is an A at a position corresponding to position 1535471 of SEQ ID NO: 2, a G at position 1525812 of SEQ ID NO: 2, a G at position 1538522 of SEQ ID NO: 2, or a favorable allele positioned between the G at position 1525812 and the G at position 1538522 of SEQ ID NO: 2, thereby producing a soybean plant having resistance to ASR.

2 . A method of producing a soybean plant having increased resistance to Asian soybean rust (ASR), the method comprising the steps of:

a) wide crossing a Glycine max plant with an ASR resistant Glycine tomentella plant having in its genome a chromosomal interval comprising SEQ ID NO: 2, or a portion thereof;

b) generating soybean pods from the cross of a);

c) isolating embryos from the pods of step b) and placing said embryos onto embryo rescue medium, wherein there is no callus induction;

d) analyzing genomic nucleic acid isolated from the embryo of step c) for the presence of an allele that associates with ASR resistance and is located within the chromosomal interval comprising SEQ ID NO: 2, wherein the allele is an A at a position corresponding to position 1535471 of SEQ ID NO: 2, a G at position 1525812 of SEQ ID NO: 2, a G at position 151538522 of SEQ ID NO: 2, or a favorable allele positioned between the G at position 1525812 and the G at position 1538522 of SEQ ID NO: 2;

e) transferring the embryos of step d) onto germination medium or elongation medium and collecting shoots from said embryos;

f) growing the collected shoots of step e) on germination or elongation medium; and

g) transferring established shoots of step f) to soil, thereby producing a soybean plant having resistance to ASR.

3 . The method of claim 2 , wherein the embryos or shoots are treated with a chromosome doubling agent in any one of steps e)-g) to create amphidiploid plants, wherein the chromosome doubling agent is either colchicine or trifluralin.

4 . A method of selecting a soybean plant having ASR resistance, the method comprising the steps of:

a. isolating a nucleic acid from a soybean plant;

b. detecting in the nucleic acid the presence of an allele that associates with ASR resistance, wherein the allele is an A at a position corresponding to position 1535471 of SEQ ID NO: 2, a G at position 1525812 of SEQ ID NO: 2, a G at position 1538522 of SEQ ID NO: 2, or a favorable allele positioned between the G at position 1525812 and the G at position 1538522 of SEQ ID NO: 2;

c. selecting a soybean plant having ASR resistance on the basis of the allele detected in step b); and

d. crossing the selected soybean plant with another soybean plant lacking an ASR resistance allele.

Assignments (3)
MERGER Recorded Jul 31, 2024
From: SYNGENTA PARTICIPATIONS AG
To: SYNGENTA CROP PROTECTION AG
Reel/Frame 068139/0538 →
MERGER Recorded Jul 25, 2024
From: SYNGENTA PARTICIPATIONS AG
To: SYNGENTA CROP PROTECTION AG
Reel/Frame 068083/0341 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 7, 2022
From: DIETRICH, ROBERT ARTHUR; CURLEY, THOMAS JOSEPH; BREITINGER, BECKY WELSH; DAWSON, JOHN LUTHER; HIPSKIND, JOHN DANIEL; LIU, QINGLI
To: SYNGENTA PARTICIPATIONS AG
Reel/Frame 062012/0489 →
Continuity (3)
Division 16095032
Provisional Application 62347945 · Jun 9, 2016
Related Publication 20230147114A1 · May 11, 2023
References Cited (17)
US 7842850B2 · Singh · 2010 [cited by applicant]
US 8759607B2 · Harada · 2014 [cited by examiner]
US 20070261139A1 · Singh · 2007 [cited by applicant]
US 20100263094A1 · Singh · 2010 [cited by applicant]
US 20110083234A1 · Nguyen · 2011 [cited by applicant]
US 20140255932A1 · Harada et al. · 2014 [cited by applicant]
US 20150135359A1 · Baley et al. · 2015 [cited by applicant]
US 20160073598A1 · Yu et al. · 2016 [cited by applicant]
Akpertey, A., Genetic introgression from Glycine Tomentella to soybean to increase seed yield., Dissertation submitted in the Graduate College of the University of Illinois at Urbana-Champaign, 2015. [cited by applicant]
International Search Report for International Patent Application No. PCT/US2017/036712 mailed Dec. 27, 2017. [cited by applicant]
Extended ESR for EP17815926.5, mailed on Oct. 25, 2019. [cited by applicant]
Singh, R.J. et al: “Intersubgeneric hybridization between Glycine maxandG. tomentella: production of FI, amphidiploid, BCI, BC2, BC3, and fertile soybean plants”, in: Theoretical and Applied Genetics; International Jour… [cited by applicant]
Langenbach, Caspar et al: “Fighting Asian Soybean Rust”, in: Frontiers in Plant Science, vol. 7. No. 797. Jun. 7, 2016, pp. 1-13. XP055287670. DOI: 10.3389/fpls.2016.0079. [cited by applicant]
Soria-Guerra, Ruth Elena et al: “Transcriptome analysis of resistant and susceptible genotypes of Glycine tomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes”, in: Theoretical and Appli… [cited by applicant]
Patzoldt, M.E. et al: “Soybean rust resistance derived from Glycine tomentella in amphiploid hybrid lines”, in: Crop Science. Crop Science Society of America. US. vol 47. No. 1. Jan. 1, 2007, pp. 158-161. XP009102209. I… [cited by applicant]
Varala et al., “Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing,” Department of Crop Sciences, University of Illinois, (PLoS ONE) Sep. 2011, vol. 6, Issue 9, e24811. [cited by applicant]
Derek Shih-Shun Shiao: “Characterizing soybean rust resistance within populatins of glycine tomentella and the inheritance and characterization of soybean aphid resistance in PI 587663, PI 587677, PI 587685, and PI 5945… [cited by applicant]