IP Library Granted Patent US 12,703,747
Granted Patent B2
US 12,703,747 · App. 18/058,364 · Granted Aug 11, 2026

Fusion constructs and methods of using thereof

Inventors: Helen Sabzevari (Germantown, MD); Simon Metenou (Germantown, MD); ChangHung Chen (Germantown, MD); Rutul R. Shah (Germantown, MD)
Assignee: PRECIGEN, INC.
C07K16/2818A61K40/11A61K40/31A61K40/36A61K40/4202A61K40/421A61K40/4211A61K40/4214A61K40/4229A61K40/4276A61P35/00C07K14/71C07K16/22A61K2039/505A61K2239/50A61K2239/59C07K2317/56C07K2317/92C07K2319/00
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Quick Facts
Patent No.
US 12,703,747
App. No.
18/058,364
Filed
Nov 23, 2022
Granted
Aug 11, 2026
Kind
B2
Art Unit
1674
USPC
424/134.1
Abstract

Provided herein is a composition comprising a fusion protein or a fragment or a variant thereof comprising an anti-PD1 antibody or a fragment/variant thereof and a TGF-β trap. Provided herein is a composition comprising a fusion protein or a fragment thereof or a variant thereof comprising an anti-PD1 antibody or a fragment/variant thereof and a ADA2 polypeptide. Also provided herein are methods of using the composition in treating cancer.

Claims (28)

1 . A method of treating cancer in a subject in need thereof, the method comprising administering to the subject a therapeutically effective amount of a fusion protein comprising:

(a) an antibody, or an antigen-binding fragment or variant thereof, that specifically binds to programmed cell death protein-1 (PD-1) and comprises either:

(1) a VH region having the sequence of SEQ ID NO: 6 and a VL region having the sequence of SEQ ID NO: 12; or

(ii) a VH region having the sequence of SEQ ID NO: 7 and a VL region having the sequence of SEQ ID NO: 13;

and

(b) a transforming growth factor beta (TGF-β) cytokine trap having the sequence of SEQ ID NO: 14;

wherein the components of (a) and (b) are connected by a peptide linker and the cancer is colorectal cancer, head and neck cancer, or ovarian cancer.

2 . The method of claim 1 , wherein the peptide linker comprises the sequence of any one of SEQ ID NOs: 17-34.

3 . The method of claim 1 , wherein the antibody is an immunoglobulin G (IgG) antibody.

4 . The method of claim 3 , wherein the IgG antibody comprises a mutation at position 108 of SEQ ID NO: 146 or 292.

5 . The method of claim 4 , wherein the mutation is S108P mutation.

6 . The method of claim 1 , wherein the peptide linker connects the VH region with the TGF-β cytokine trap.

7 . The method of claim 1 , wherein the antibody, or antigen-binding fragment or variant thereof, comprises

a VH region having the sequence of SEQ ID NO: 6 and a VL region having the sequence of SEQ ID NO: 12.

8 . The method of claim 1 , wherein the antibody, or antigen-binding fragment or variant thereof, comprises

a VH region having the sequence of SEQ ID NO: 7 and a VL region having the sequence of SEQ ID NO: 13.

9 . The method of claim 1 , wherein the subject is a human.

10 . The method of claim 1 , further comprising administering to the subject an effective amount of T cells engineered to express an exogenous receptor.

11 . The method of claim 10 , wherein the exogenous receptor is a chimeric antigen receptor comprising an antigen-binding domain that binds to an epitope on CD19, BCMA, CD44, α-Folate receptor, CAIX, CD30, ROR1, CEA, EGP-2, EGP-40, HER2, HER3, Folate-binding Protein, GD2, GD3, IL-13R-a2, KDR, EDB-F, mesothelin, CD22, EGFR, Folate receptor α, MUC-1, MUC-4, MUC-16, MAGE-A1, h5T4, PSMA, TAG-72, EGFR, CD20, EGFRVIII, CD123, or VEGF-R2.

12 . The method of claim 10 , wherein the exogenous receptor is a chimeric antigen receptor and the engineered T cells further express a fusion protein comprising IL-15 and IL-15Rα.

13 . The method of claim 1 , wherein the fusion protein comprises either:

(a) the amino acid sequences of SEQ ID NO: 15 and SEQ ID NO: 294; or

(b) the amino acid sequences of SEQ ID NO: 296 and SEQ ID NO: 144.

14 . The method of claim 1 , wherein the cancer is colorectal cancer.

15 . The method of claim 11 , wherein the chimeric antigen receptor comprises an antigen-binding domain that binds to an epitope on CD33.

16 . The method of claim 1 , wherein the fusion protein comprises either:

(a) (i) the amino acid sequence of SEQ ID NO: 15, and (ii) the sequence of SEQ ID NO: 16, 143, or 294; or (b) (i) the amino acid sequence of SEQ ID NO: 296, and (ii) the amino acid sequence of SEQ ID NO: 144, 145, or 295.

17 . The method of claim 1 , wherein the fusion protein comprises the amino acid sequence of SEQ ID NO: 296 and the amino acid sequence of SEQ ID NO: 144.

Assignments (1)
PATENT SECURITY AGREEMENT Recorded Sep 3, 2025
From: PRECIGEN, INC.; GENVEC LLC; PRECIGEN ACTOBIO, INC.; EXEMPLAR GENETICS, LLC
To: BIOPHARMA CREDIT PLC, AS COLLATERAL AGENT
Reel/Frame 072828/0564 →
Continuity (7)
Division 16506981 · Jul 9, 2019
Provisional Application 62866420 · Jun 25, 2019
Provisional Application 62864367 · Jun 20, 2019
Provisional Application 62863710 · Jun 19, 2019
Provisional Application 62695623 · Jul 9, 2018
Provisional Application 62695627 · Jul 9, 2018
Related Publication 20240141045A1 · May 2, 2024
References Cited (82)
US 5595756A · Bally · 1997 [cited by examiner]
US 5968780A · Fan et al. · 1999 [cited by applicant]
US 7595048B2 · Honjo et al. · 2009 [cited by applicant]
US 8354509B2 · Carven et al. · 2013 [cited by applicant]
US 9180185B2 · Bauss et al. · 2015 [cited by applicant]
US 9629877B2 · Cooper et al. · 2017 [cited by applicant]
US 9676863B2 · Lo · 2017 [cited by applicant]
US 9758582B2 · Govindappa et al. · 2017 [cited by applicant]
US 9809637B2 · Kumar et al. · 2017 [cited by applicant]
US 9850306B2 · Bedi et al. · 2017 [cited by applicant]
US 9987500B2 · Parapdopoulos et al. · 2018 [cited by applicant]
US 12194094B2 · Sabzevari et al. · 2025 [cited by applicant]
US 20050203022A1 · Gotwals et al. · 2005 [cited by applicant]
US 20090217401A1 · Korman et al. · 2009 [cited by applicant]
US 20110245174A1 · Artymiuk et al. · 2011 [cited by applicant]
US 20150086584A1 · Gilboa et al. · 2015 [cited by applicant]
US 20160193334A1 · Strack et al. · 2016 [cited by applicant]
US 20160272960A1 · Thanos et al. · 2016 [cited by applicant]
US 20160340430A1 · Bedi · 2016 [cited by examiner]
US 20170233747A1 · Govindappa et al. · 2017 [cited by applicant]
US 20180118832A1 · Lo et al. · 2018 [cited by applicant]
US 20180134766A1 · Larson et al. · 2018 [cited by applicant]
US 20180140686A1 · Varadarajan et al. · 2018 [cited by applicant]
US 20180179261A1 · Kumar et al. · 2018 [cited by applicant]
US 20180327477A1 · Kumar et al. · 2018 [cited by applicant]
US 20190048085A1 · Dotti et al. · 2019 [cited by applicant]
US 20190390186A1 · Rosbash et al. · 2019 [cited by applicant]
US 20200048351A1 · Sabzevari et al. · 2020 [cited by applicant]
CN 109913425A · 2019 [cited by applicant]
EP 2542590B1 · 2017 [cited by applicant]
WO 2011109789A2 · 2011 [cited by applicant]
WO WO2013169693A1 · 2013 [cited by examiner]
WO WO2015118175A2 · 2015 [cited by examiner]
WO 2015164594A1 · 2015 [cited by applicant]
WO 2016061286A2 · 2016 [cited by applicant]
WO 2018129331A1 · 2018 [cited by applicant]
WO 2018208720A1 · 2018 [cited by applicant]
WO 2018205985A1 · 2018 [cited by applicant]
WO 2019211489A1 · 2019 [cited by applicant]
WO 2020118094A9 · 2020 [cited by applicant]
WO 2020263796A1 · 2020 [cited by applicant]
Greenspan et al. 1999. Defining epitopes: It's not as easy as it seems; Nature Biotechnology, 17:936-937 (Year: 1999). [cited by examiner]
Topalian et al. Safety, Activity, and Immune Correlates of Anti-PD-1 Antibody in Cancer. New England Journal of Medicine. 2012; 366(26): 2443-2454 (Year: 2012). [cited by examiner]
Metropulos et al. The difficulty in translating the preclinical success of combined TGFβ and immune checkpoint inhibition to clinical trial. eBioMedicine. Nov. 28, 2022;86:104380 (Year: 2022). [cited by examiner]
Heppner et al. Tumor heterogeneity: biological implications and therapeutic consequences. Cancer Metastasis Review 2:5-23; 1983 (Year: 1983). [cited by examiner]
Sporn et al. Chemoprevention of Cancer. Carcinogenesis, vol. 21 (2000), 525-530 (Year: 2000). [cited by examiner]
Auerbach et al. Angiogenesis assays: problems and pitfalls. Cancer and Metastasis Reviews, 2000, 19: 167-172 (Year: 2000). [cited by examiner]
Gura T. Systems for Identifying New Drugs Are Often Faulty. Science, 1997, 278(5340): 1041-1042 (Year: 1997). [cited by examiner]
Jain RK. Barriers to Drug Delivery in Solid Tumors. Scientific American, Jul. 1994,58-65 (Year: 1994). [cited by examiner]
Hait. Anticancer drug development: the grand challenges. Nature Reviews/Drug Discovery, 2010, 9, pp. 253-254 (Year: 2010). [cited by examiner]
Gravanis et al. The changing world of cancer drug development: the regulatory bodies' perspective. Chin Clin Oncol, 2014, 3, pp. 1-5 (Year: 2014). [cited by examiner]
Beans. Targeting metastasis to halt cancer's spread. PNAS 2018; 115(50): 12539-12543 (Year: 2018). [cited by examiner]
Bowie et al. Deciphering the Message in Protein Sequences: Tolerance to Amino Acid Substitutions. Science, 1990, 247:1306-1310 (Year: 1990). [cited by examiner]
Burgess et al. Possible Dissociation of the Heparin-binding and Mitogenic Activities of Heparin-binding (Acidic Fibroblast) Growth Factor-1 from Its Receptor-binding Activities by Site-directed Mutagenesis of a Single L… [cited by examiner]
Lazar et al. Transforming Growth Factor ox: Mutation of Aspartic Acid 47 and Leucine 48 Results in Different Biological Activities. Mol. Cell. Biol., 8:1247-1252, 1988 (Year: 1988). [cited by examiner]
Bork. Powers and Pitfalls in Sequence Analysis The 70% Hurdle. Genome Research, 2000, 10:398-400 (Year: 2000). [cited by examiner]
David, Justin M., et al., A novel bifunctional anti-PD-L 1/TGF-13 Trap fusion protein (M7824) efficiently reverts mesenchymalization of human lung cancer cells, Oncoimmunology, 2017, vol. 6, No. 10, e1349589, pp. 1-15. [cited by applicant]
Lan, Yan et al., Enhanced preclinical antitumor activity of M7824, a bifunctional fusion protein simultaneously targeting PD-L 1 and TGF-!3., Sci. Transl. Med. 10, eaan5488 (2018), pp. 1-15. [cited by applicant]
Qian et al., Binding Affinity of Transforming Growth Factor-b for it's Type II Receptor is Determined by the C-Terminal Region of the Molecule, J Biol Chem, Nov. 29, 1996, vol. 271, No. 48, pp. 30656-30662. [cited by applicant]
Ravi, Rajani et al., Bifunctional immune checkpoint-targeted antibody-ligand traps that simultaneously disable TGFI3 enhance the efficacy of cancer immunotherapy, Nature Communications I (2018), 9:741, pp. 1-14. [cited by applicant]
Lazar et al. Transforming Growth Factor alpha: Mutation of Aspartic Acid 47 and Leucine 48 Results in Different Biological Activities. Mol. Cell. Biol., 8:1247-1252, 1988 (Year: 1988). [cited by applicant]
Strauss et al., Clinical Cancer Research, 24:1287-1295 (2018). [cited by applicant]
Shuguang Tan et al., An Unexpected N-Terminal Loop in PD-1 Dominates Binding by Nivolumab, 8 Nat. Commc'ns, No. 1, art. 14369 (2017). [cited by applicant]
Shoichiro Horita et al., High-Resolution Crystal Structure of the Therapeutic Antibody Pembrolizumab Bound to Human PD-1, 6 Sci. Rep., art. 35297 (2016). [cited by applicant]
Jianzhi Zhang, Rates of Conservative and Radical Nonsynonymous Nucleotide Substitutions in Mammalian Nuclear Genes, 50 J. Mol. Evol. 56 (2000). [cited by applicant]
Pauline C. Ng & Steven Henikoff, Predicting Deleterious Amino Acid Substitutions, 11 Genome Res. 863 (2001). [cited by applicant]
Jason Baardsnes et al., TβR-II Discriminates the High- and Low-Affinity TGF-β Isoforms via Two Hydrogen-Bonded Ion Pairs, 48 Biochemistry 2146 (2009) (Author Manuscript). [cited by applicant]
Mary E. Keir et al., PD-1 and Its Ligands in Tolerance and Immunity, 26 Ann. Rev. Immunol. 677 (2008). [cited by applicant]
D.T. Jones, Critically Assessing the State-of-the-Art in Protein Structure Prediction, 1 Nat. Rev. Mol. Cell Biol. 116 (2000). [cited by applicant]
S.C.E. Tosatto & S. Toppo, Large-Scale Prediction of Protein Structure and Function from Sequence, 12 Curr. Pharm. Des. 2067 (2006). [cited by applicant]
Joan Massagué, TGFβ Signalling in Context, 13 Nat. Rev. Mol. Cell Biol. 616 (2012). [cited by applicant]
Michael Pickup et al., The Roles of TGFβ in the Tumour Microenvironment, 13 Nat. Rev. Cancer 788 (2013). [cited by applicant]
Philipp Holliger & Peter J. Hudson, Engineered Antibody Fragments and the Rise of Single Domains, 23 Nat. Biotechnol. 1126 (2005). [cited by applicant]
Megha Garg et al., Rilonacept Maintains Long-Term Inflammatory Remission in Patients with Deficiency of the IL-1 Receptor Antagonist, 2 JCI Insight, e94838 (2017). [cited by applicant]
Weiping Zou, Immunosuppressive Networks in the Tumour Environment and Their Therapeutic Relevance, 5 Nat. Rev. Cancer 263 (2005). [cited by applicant]
Sanjeev Mariathasan et al., TGFβ Attenuates Tumour Response to PD-L1 Blockade by Contributing to Exclusion of T Cells, 554 Nature 544 (2018). [cited by applicant]
M. Brown et al., Tolerance of Single, but Not Multiple, Amino Acid Replacements in Antibody VH CDR2: A Means of Minimizing B Cell Wastage from Somatic Hypermutation?, 156 J. Immunol. 3285 (1996). [cited by applicant]
C. Lloyd et al., Modelling the Human Immune Response: Performance of a 1011 Human Antibody Repertoire Against a Broad Panel of Therapeutically Relevant Antigens, 22 Protein Eng'g, Des. & Selection 159 (2009). [cited by applicant]
Bryan M. Edwards et al., The Remarkable Flexibility of the Human Antibody Repertoire: Isolation of Over One Thousand Different Antibodies to a Single Protein, BLyS, 334 J. Mol. Biol. 103 (2003). [cited by applicant]
Detlef Gossow & Gerhard Seemann, Humanization of Monoclonal Antibodies, in 203 Methods Enzymology 99 (1991). [cited by applicant]
Karsten Winkler et al., Changing the Antigen Binding Specificity by Single Point Mutations of an Anti-p24 (HIV-1) Antibody, 165 J. Immunol. 4505 (2000). [cited by applicant]
Jeffrey Skolnick & Jacquelyn S. Fetrow, From Genes to Protein Structure and Function: Novel Applications of Computational Approaches in the Genomic Era, 18 Trends Biotechnol. 34 (2000). [cited by applicant]