METHODS FOR DETECTION OF FOLATE RECEPTOR 1 IN A PATIENT SAMPLE
The invention generally relates to methods and kits for the detection of human folate receptor 1 in a sample. Peptides of human folate receptor 1 are further provided.
1 . A method of detecting human folate receptor 1 (FOLR1) in a sample comprising:
(a) capturing said folate receptor 1 (FOLR1) with an immunocapture reagent bound to a solid support;
(b) eluting FOLR1 from the solid support;
(c) digesting the eluted FOLR1; and
(d) performing liquid chromatography-mass spectrometry (LC/MS) analysis on the digested FOLR1, wherein said FOLR1 is detected by monitoring the chromatographic separation and mass spectrometric response of at least one signature FOLR1 peptide.
2 . The method of claim 1 , wherein the level of FOLR1 in the sample is quantitated by said LC/MS analysis.
3 . (canceled)
4 . The method of claim 1 , wherein the immunocapture reagent comprises an antibody or antigen-binding fragment which binds to FOLR1.
5 .- 9 . (canceled)
10 . The method of claim 4 , wherein binding of the antibody or antigen-binding fragment to FOLR1 is not inhibited by binding of folic acid to FOLR1.
11 .- 12 . (canceled)
13 . The method of claim 4 , wherein the antibody or antigen-binding fragment comprises:
(a) a variable heavy chain (VH) complementarity determining region (CDR)-1 of SEQ ID NO: 1; a VH CDR-2 of SEQ ID NO: 2; a VH CDR-3 of SEQ ID NO: 3; a variable light chain (VL) complementarity determining region (CDR)-1 of SEQ ID NO: 13; a VL CDR-2 of SEQ ID NO: 14, and a VL CDR-3 of SEQ ID NO: 15; or
(b) a variable heavy chain (VH) complementarity determining region (CDR)-1 of SEQ ID NO: 4; a VH CDR-2 of SEQ ID NO: 5; a VH CDR-3 of SEQ ID NO: 6; a variable light chain (VL) complementarity determining region (CDR)-1 of SEQ ID NO: 16; a VL CDR-2 of SEQ ID NO: 17, and a VL CDR-3 of SEQ ID NO: 18.
14 .- 18 . (canceled)
19 . The method of claim 4 , wherein the antibody or antigen-binding fragment comprises:
(a) a variable heavy chain (VH) having the sequence of SEQ ID NO: 25 and a variable light chain (VL) having the sequence of SEQ ID NO: 29; or
(b) a variable heavy chain (VH) having the sequence of SEQ ID NO: 26 and a variable light chain (VL) having the sequence of SEQ ID NO: 30.
20 . (canceled)
21 . The method of claim 4 , wherein the antibody or antigen-binding fragment comprises:
(a) a heavy chain having the sequence of SEQ ID NO: 33 and a light chain having the sequence of SEQ ID NO: 37; or
(b) comprises a heavy chain having the sequence of SEQ ID NO: 34 and a light chain having the sequence of SEQ ID NO: 38.
22 .- 24 . (canceled)
25 . The method of claim 1 , wherein the solid support comprises a mass spectrometric immunoassay (MSIA) microcolumn.
26 . The method of claim 1 , wherein the solid support comprises magnetic beads.
27 .- 31 . (canceled)
32 . The method of claim 1 , wherein FOLR1 is digested with Trypsin/Lys-C.
33 . The method of claim 1 , wherein digesting the FOLR1 produces a peptide comprising the sequence of:
SEQ ID NO: 42,
SEQ ID NO: 43;
SEQ ID NO: 44; and/or
SEQ ID NO: 45.
34 .- 39 . (canceled)
40 . The method of claim 1 , wherein the at least one signature peptide comprises:
(a) a peptide comprising the sequence of SEQ ID NO: 42;
(b) a peptide comprising the sequence of SEQ ID NO: 43;
(c) a peptide comprising the sequence of SEQ ID NO: 44; and
(d) a peptide comprising the sequence of SEQ ID NO: 45.
41 . The method of claim 1 , wherein said sample comprises a bodily fluid selected from the group consisting of: plasma, serum, ascites fluid, and a peripheral blood sample.
42 .- 45 . (canceled)
46 . The method of claim 1 , wherein the sample is obtained from a patient having cancer.
47 .- 50 . (canceled)
51 . The method of claim 1 , wherein detecting FOLR1 is not inhibited by an antibody or antigen-binding fragment present in the sample, wherein said antibody or antigen-binding fragment comprises: a variable light chain (VL) complementarity determining region (CDR)-1 of SEQ ID NO: 59; a VL CDR-2 of SEQ ID NO: 60; a VL CDR-3 of SEQ ID NO: 61; a variable heavy chain (VH) CDR-1 of SEQ ID NO: 62; a VH CDR-2 of SEQ ID NO: 64; and a VH CDR-3 of SEQ ID NO: 65.
52 .- 54 . (canceled)
55 . The method of claim 1 , which can detect at least 0.5 ng/mL FOLR1 in a sample.
56 .- 57 . (canceled)
58 . The method of claim 1 , wherein the signal-to-noise ratio is at least 5.
59 . (canceled)
60 . The method of claim 1 , wherein the FOLR1 is shed FOLR1.
61 . A peptide consisting of the sequence of:
(a) SEQ ID NO: 42
(b) SEQ ID NO: 43;
(c) SEQ ID NO: 44; or
(d) SEQ ID NO: 45.
62 .- 65 . (canceled)
65 . A kit comprising: an immunocapture reagent which binds to FOLR1, a digestion reagent, and at least one peptide selected from the group consisting of:
(a) a peptide comprising the sequence of SEQ ID NO: 42;
(b) a peptide comprising the sequence of SEQ ID NO: 43;
(c) a peptide comprising the sequence of SEQ ID NO: 44; and
(d) a peptide comprising the sequence of SEQ ID NO: 45.
66 .- 80 . (canceled)