BETA-CATENIN (CTNNB1) iRNA COMPOSITIONS AND METHODS OF USE THEREOF
The present invention relates to RNAi agents, e.g., double stranded RNA (dsRNA) agents, targeting the beta-catenin (CTNNB1) gene. The invention also relates to methods of using such RNAi agents to inhibit expression of a CTNNB1 gene and to methods of preventing and treating a CTNNB1-associated disorder, e.g., cancer, e.g., hepatocellular carcinoma.
1 . A double stranded RNA (dsRNA) agent for inhibiting expression of beta-catenin (CTNNB1) in a cell, or a pharmaceutically acceptable salt thereof, comprising a sense strand differing by no more than 4 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and an antisense strand differing by no more than 4 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21,
wherein a, g, c and u are 2′-O-methyl (2′-OMe) A, G, C, and U, respectively; Af, Gf, Cf, and Uf are 2′-fluoro A, G, C and U, respectively; s is a phosphorothioate linkage; VP is a vinyl phosphonate; dT is 2′-deoxythimidine-3′-phosphate; dG is 2′-deoxyguanosine-3′-phosphate; and dA is 2′-deoxyadenosine-3′-phosphate.
2 . The dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 , wherein the sense strand differs by no more than 3 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 3 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
3 . The dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 , wherein the sense strand differs by no more than 2 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 2 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
4 . The dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 , wherein the sense strand differs by no more than 1 base from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 1 base from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
5 . The dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 , wherein the sense strand comprises the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand comprises the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
6 . The dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 , wherein the sense strand consists of the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand consists of the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
7 . A double stranded RNA (dsRNA) agent for inhibiting expression of beta-catenin (CTNNB1) in a cell, or a pharmaceutically acceptable salt thereof, comprising a sense strand comprising the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and an antisense strand comprising the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21,
wherein a, g, c and u are 2′-O-methyl (2′-OMe) A, G, C, and U respectively; Af, Gf, Cf and Uf are 2′-fluoro A, G, C and U respectively; s is a phosphorothioate linkage; VP is a vinyl phosphonate; dT is 2′-deoxythimidine-3′-phosphate; dG is 2′-deoxyguanosine-3′-phosphate; and dA is 2′-deoxyadenosine-3′-phosphate.
8 . A pharmaceutical composition comprising the dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 and a pharmaceutically acceptable carrier.
9 . The pharmaceutical composition of claim 8 , wherein the dsRNA agent, or a pharmaceutically acceptable salt thereof, is in an unbuffered solution.
10 . The pharmaceutical composition of claim 9 , wherein the unbuffered solution is saline or water.
11 . The pharmaceutical composition of claim 8 , wherein the dsRNA agent, or a pharmaceutically acceptable salt thereof, is in a buffer solution.
12 . The pharmaceutical composition of claim 11 , wherein the buffer solution comprises acetate, citrate, prolamine, carbonate, or phosphate or any combination thereof.
13 . The pharmaceutical composition of claim 11 , wherein the buffer solution is phosphate buffered saline (PBS).
14 . A pharmaceutical composition comprising the dsRNA agent, or a pharmaceutically acceptable salt thereof, of claim 1 and a lipid.
15 . The pharmaceutical composition of claim 14 , wherein the lipid is a cationic lipid.
16 . The pharmaceutical composition of claim 15 , wherein the cationic lipid comprises one or more biodegradable groups.
17 . The pharmaceutical composition of claim 16 , wherein the lipid comprises the structure
18 . The pharmaceutical composition of claim 17 , comprising
(a)
(b) cholesterol;
(c) distearoylphosphatidylcholine (DSPC); and
(d) 1,2-Dimyristoyl-rac-glycero-3-methoxypolyethylene glycol (PEG-DMG).
19 . The pharmaceutical composition of claim 18 , wherein the
DSPC, cholesterol, and PEG-DMG are present in a molar ratio of 50:12:36:2, respectively.
20 . A pharmaceutical composition comprising a dsRNA agent for inhibiting expression of a gene encoding beta-catenin (CTNNB1), or a pharmaceutically acceptable salt thereof,
wherein the dsRNA agent, or a pharmaceutically acceptable salt thereof, comprises a sense strand differing by no more than 4 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and an antisense strand differing by no more than 4 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21,
wherein a, g, c and u are 2′-O-methyl (2′-OMe) A, G, C, and U respectively; Af, Gf, Cf and Uf are 2′-fluoro A, G, C and U respectively; s is a phosphorothioate linkage; VP is a vinyl phosphonate; dT is 2′-deoxythimidine-3′-phosphate; dG is 2′-deoxyguanosine-3′-phosphate; and dA is 2′-deoxyadenosine-3′-phosphate; and
a lipid.
21 . The pharmaceutical composition of claim 20 , wherein the sense strand differs by no more than 3 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 3 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
22 . The pharmaceutical composition of claim 20 , wherein the sense strand differs by no more than 2 bases from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 2 bases from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
23 . The pharmaceutical composition of claim 20 , wherein the sense strand differs by no more than 1 base from the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand differs by no more than 1 base from the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
24 . The pharmaceutical composition of claim 20 , wherein the sense strand comprises the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20 and the antisense strand comprises the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21.
25 . The pharmaceutical composition of claim 20 , wherein the lipid is a cationic lipid.
26 . The pharmaceutical composition of claim 25 , wherein the cationic lipid comprises one or more biodegradable groups.
27 . The pharmaceutical composition of claim 26 , wherein the lipid comprises the structure
28 . The pharmaceutical composition of claim 27 , comprising
(a)
(b) cholesterol;
(c) distearoylphosphatidylcholine (DSPC); and
(d) 1,2-Dimyristoyl-rac-glycero-3-methoxypolyethylene glycol (PEG-DMG).
29 . The pharmaceutical composition of claim 28 , wherein the
DSPC, cholesterol, and PEG-DMG are present in a molar ratio of 50:12:36:2 respectively.
30 . A pharmaceutical composition comprising
(a) a dsRNA agent for inhibiting expression of a gene encoding beta-catenin (CTNNB1), or a pharmaceutically acceptable salt thereof,
wherein the dsRNA agent consists of a sense strand consisting of the nucleotide sequence 5′-usascuguugGfAfUfugauucgasasa-3′ of SEQ ID NO: 20) and an antisense strand consisting of the nucleotide sequence 5′-VPudTucdGadAucaadTcCfaacaguasgsc-3′ of SEQ ID NO: 21,
wherein a, g, c and u are 2′-O-methyl (2′-OMe) A, G, C, and U respectively; Af, Gf, Cf and Uf are 2′-fluoro A, G, C and U respectively; s is a phosphorothioate linkage; VP is a vinyl phosphonate; dT is 2′-deoxythimidine-3′-phosphate; dG is 2-deoxyguanosine-3′-phosphate; and dA is 2-deoxyadenosine-3′-phosphate;
(b) a lipid comprising the structure
(c) cholesterol;
(d) distearoylphosphatidylcholine (DSPC); and
(e) 1,2-Dimyristoyl-rac-glycero-3-methoxypolyethylene glycol (PEG-DMG), wherein the
DSPC, cholesterol, and PEG-DMG are present in a molar ratio of 50:12:36:2 respectively.