Bispecific T cell engagers
Provided are bispecific T Cell Engagers. More specifically, the invention is directed to bispecific molecules that bind to DLL3, MUC17 or CLD18 and activate CD (cluster of differentiation) molecules (e.g. CD3, CD28 and CD137). Also provided are methods of treating an ailment such as cancer using an antibody (or fragment) against DLL3, MUC17 or CLD18 paired with an antibody (or fragment) of an agonist antibody that activates CD3, CD28 and/or CD137.
1 . A monoclonal antibody that binds to human Delta-like ligand 3 (DLL3), comprising an antigen binding fragment comprising a combination of CDRs selected from the group consisting of:
(1) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(2) an HCDR1 sequence of SEQ ID NO:7, an HCDR2 sequence of SEQ ID NO:14, an HCDR3 sequence of SEQ ID NO:27, an LCDR1 sequence of SEQ ID NO:31, an LCDR2 sequence of SEQ ID NO:40, and an LCDR3 sequence of SEQ ID NO:47,
(3) an HCDR1 sequence of SEQ ID NO:1, an HCDR2 sequence of SEQ ID NO:11, an HCDR3 sequence of SEQ ID NO:22, an LCDR1 sequence of SEQ ID NO:32, an LCDR2 sequence of SEQ ID NO:39, and an LCDR3 sequence of SEQ ID NO:54,
(4) an HCDR1 sequence of SEQ ID NO:5, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(5) an HCDR1 sequence of SEQ ID NO:2, an HCDR2 sequence of SEQ ID NO:10, an HCDR3 sequence of SEQ ID NO:22, an LCDR1 sequence of SEQ ID NO:32, an LCDR2 sequence of SEQ ID NO:46, and an LCDR3 sequence of SEQ ID NO:55,
(6) an HCDR1 sequence of SEQ ID NO:1, an HCDR2 sequence of SEQ ID NO:11, an HCDR3 sequence of SEQ ID NO:22, an LCDR1 sequence of SEQ ID NO:32, an LCDR2 sequence of SEQ ID NO:46, and an LCDR3 sequence of SEQ ID NO:55,
(7) an HCDR1 sequence of SEQ ID NO:4, an HCDR2 sequence of SEQ ID NO:12, an HCDR3 sequence of SEQ ID NO:23, an LCDR1 sequence of SEQ ID NO:36, an LCDR2 sequence of SEQ ID NO:44, and an LCDR3 sequence of SEQ ID NO:48,
(8) an HCDR1 sequence of SEQ ID NO:3, an HCDR2 sequence of SEQ ID NO:13, an HCDR3 sequence of SEQ ID NO:28, an LCDR1 sequence of SEQ ID NO:32, an LCDR2 sequence of SEQ ID NO:46, and an LCDR3 sequence of SEQ ID NO:54,
(9) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:15, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:51,
(10) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:51,
(11) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:18, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:51,
(12) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:15, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:34, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(13) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:34, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(14) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:18, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:34, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(15) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:15, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:37, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:51,
(16) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:37, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:51,
(17) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:18, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:37, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:51,
(18) an HCDR1 sequence of SEQ ID NO:7, an HCDR2 sequence of SEQ ID NO:15, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:38, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:49,
(19) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:38, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:49,
(20) an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:18, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:38, an LCDR2 sequence of SEQ ID NO:42, and an LCDR3 sequence of SEQ ID NO:49,
(21) an HCDR1 sequence of SEQ ID NO:5, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:25, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:51,
(22) an HCDR1 sequence of SEQ ID NO:5, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:34, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49,
(23) an HCDR1 sequence of SEQ ID NO:8, an HCDR2 sequence of SEQ ID NO:19, an HCDR3 sequence of SEQ ID NO:23, an LCDR1 sequence of SEQ ID NO:35, an LCDR2 sequence of SEQ ID NO:45, and an LCDR3 sequence of SEQ ID NO:52, and
(24) an HCDR1 sequence of SEQ ID NO:9, an HCDR2 sequence of SEQ ID NO:21, an HCDR3 sequence of SEQ ID NO:29, an LCDR1 sequence of SEQ ID NO:32, an LCDR2 sequence of SEQ ID NO:39, and an LCDR3 sequence of SEQ ID NO:54,
wherein the monoclonal antibody binds to human DLL3.
2 . The monoclonal antibody of claim 1 , comprising a heavy chain variable domain (VH) sequence and light chain variable domain (VL) sequence combination selected from the group consisting of
(1) SEQ ID NOS:58 and 78;
(2) SEQ ID NOS:72 and 76;
(3) SEQ ID NOS:65 and 78;
(4) SEQ ID NOS:71 and 79;
(5) SEQ ID NOS:73 and 79;
(6) SEQ ID NOS:64 and 81;
(7) SEQ ID NOS:57 and 82;
(8) SEQ ID NOS:59 and 82;
(9) SEQ ID NOS:61 and 82;
(10) SEQ ID NOS:63 and 82;
(11) SEQ ID NOS:56 and 83;
(12) SEQ ID NOS:58 and 83;
(13) SEQ ID NOS:60 and 83;
(14) SEQ ID NOS:62 and 83;
(15) SEQ ID NOS:57 and 84;
(16) SEQ ID NOS:59 and 84;
(17) SEQ ID NOS:61 and 84;
(18) SEQ ID NOS:63 and 84;
(19) SEQ ID NOS:56 and 85;
(20) SEQ ID NOS:58 and 85;
(21) SEQ ID NOS:60 and 85;
(22) SEQ ID NOS:62 and 85;
(23) SEQ ID NOS:70 and 86;
(24) SEQ ID NOS:69 and 87; and
(25) SEQ ID NOS:74 and 89.
3 . The monoclonal antibody of claim 1 , comprising an antigen binding fragment comprising an HCDR1 sequence of SEQ ID NO:6, an HCDR2 sequence of SEQ ID NO:16, an HCDR3 sequence of SEQ ID NO:24, an LCDR1 sequence of SEQ ID NO:33, an LCDR2 sequence of SEQ ID NO:43, and an LCDR3 sequence of SEQ ID NO:49.
4 . The monoclonal antibody of claim 3 , comprising a heavy chain variable domain (VH) sequence and light chain variable domain (VL) sequence combination of SEQ ID NOS:58 and 78.
5 . The monoclonal antibody of claim 4 , comprising the amino acid sequences of SEQ ID NOS: 276 and 297.
6 . The monoclonal antibody of claim 1 , comprising an antigen binding fragment comprising an HCDR1 sequence of SEQ ID NO:7, an HCDR2 sequence of SEQ ID NO:14, an HCDR3 sequence of SEQ ID NO:27, an LCDR1 sequence of SEQ ID NO:31, an LCDR2 sequence of SEQ ID NO:40, and an LCDR3 sequence of SEQ ID NO:47.
7 . The monoclonal antibody of claim 6 , comprising a heavy chain variable domain (VH) sequence and light chain variable domain (VL) sequence combination of SEQ ID NOS:72 and 76.
8 . The monoclonal antibody of claim 7 , comprising the amino acid sequences of SEQ ID NOS:291 and 295.
9 . A polypeptide comprising two antigen binding fragments of anti-DLL3 antibodies,
wherein the polypeptide comprises:
a first polypeptide chain comprising an antigen binding fragment of a first anti-DLL3 antibody in svFc form, wherein the antigen binding fragment of the first anti-DLL3 antibody comprises a heavy chain variable region comprising heavy chain CDR1 comprising the amino acid sequence of SEQ ID NO:7, heavy chain CDR2 comprising the amino acid sequence of SEQ ID NO:14, and heavy chain CDR3 comprising the amino acid sequence of SEQ ID NO:27, and a light chain variable region comprising light chain CDR1 comprising the amino acid sequence of SEQ ID NO:31, light chain CDR2 comprising the amino acid sequence of SEQ ID NO:40, and light chain CDR3 comprising the amino acid sequence of SEQ ID NO:47;
a second polypeptide chain comprising a heavy chain of a second anti-DLL3 antibody, wherein the heavy chain of the second anti-DLL3 antibody comprises a heavy chain variable region comprising heavy chain CDR1 comprising the amino acid sequence of SEQ ID NO:6, heavy chain CDR2 comprising the amino acid sequence of SEQ ID NO:16, and heavy chain CDR3 comprising the amino acid sequence of SEQ ID NO:24; and
a third polypeptide chain comprising a light chain of the second anti-DLL3 antibody, wherein the light chain of the second anti-DLL3 antibody comprises a light chain variable region comprising light chain CDR1 comprising the amino acid sequence of SEQ ID NO:33, light chain CDR2 comprising the amino acid sequence of SEQ ID NO:43, and light chain CDR3 comprising the amino acid sequence of SEQ ID NO:49,
wherein the first anti-DLL3 antibody and the second anti-DLL3 antibody bind to different epitopes of DLL3.
10 . The polypeptide of claim 9 , wherein the two antigen binding fragments of the anti-DLL3 antibodies are humanized.
11 . The polypeptide of claim 9 , further comprising an antigen binding fragment of an anti-CD3 antibody in the first polypeptide chain, wherein the anti-CD3 antibody comprises a heavy chain variable region comprising SEQ ID NO:256 and a light chain variable region comprising SEQ ID NO:261.
12 . The polypeptide of claim 9 , wherein the first polypeptide chain comprises the amino acid sequence of SEQ ID NO:347, wherein the second polypeptide chain comprises the amino acid sequence of SEQ ID NO:276, and wherein the third polypeptide chain comprises the amino acid sequence of SEQ ID NO:297.
13 . A composition, comprising:
a) the polypeptide of claim 9 , and
b) a pharmaceutically acceptable carrier.
14 . A method of activating T-cells against DLL3 expressing cells in a subject, comprising the step of administering to the subject an effective amount of the polypeptide of claim 9 .
15 . The method of claim 14 , wherein the subject has cancer.
16 . A polypeptide comprising an antigen binding fragment of an anti-CD3 antibody and two antigen binding fragments of anti-DLL3 antibodies, wherein the polypeptide comprises:
a first polypeptide chain comprising:
(1) an antigen binding fragment of a first anti-DLL3 antibody in svFc form, wherein the antigen binding fragment of a first anti-DLL3 antibody in svFc form comprises a heavy chain variable region comprising heavy chain CDR1 comprising the amino acid sequence of SEQ ID NO:7, heavy chain CDR2 comprising the amino acid sequence of SEQ ID NO:14, and heavy chain CDR3 comprising the amino acid sequence of SEQ ID NO:27, and a light chain variable region comprising light chain CDR1 comprising the amino acid sequence of SEQ ID NO:31, light chain CDR2 comprising the amino acid sequence of SEQ ID NO:40, and light chain CDR3 comprising the amino acid sequence of SEQ ID NO:47; and
(2) an antigen binding fragment of an anti-CD3 antibody in scFv form, wherein the antigen binding fragment of an anti-CD3 antibody in scFv form comprises a heavy chain variable region comprising SEQ ID NO:256 and a light chain variable region comprising SEQ ID NO:261;
a second polypeptide chain comprising a heavy chain of a second anti-DLL3 antibody, wherein the heavy chain of the second anti-DLL3 antibody comprises a heavy chain variable region comprising heavy chain CDR1 comprising the amino acid sequence of SEQ ID NO:6, heavy chain CDR2 comprising the amino acid sequence of SEQ ID NO:16, and heavy chain CDR3 comprising the amino acid sequence of SEQ ID NO:24; and
a third polypeptide chain comprising a light chain of the second anti-DLL3 antibody, wherein the light chain of the second anti-DLL3 antibody comprises a light chain variable region comprising light chain CDR1 comprising the amino acid sequence of SEQ ID NO:33, light chain CDR2 comprising the amino acid sequence of SEQ ID NO:43, and light chain CDR3 comprising the amino acid sequence of SEQ ID NO:49,
wherein the first anti-DLL3 antibody and the second anti-DLL3 antibody bind to different epitopes of DLL3.
17 . A method of activating T-cells against DLL3 expressing cells in a subject, comprising the step of administering to the subject an effective amount of the polypeptide of claim 16 .
18 . The method of claim 17 , wherein the subject has cancer.