IP Library Patent Application 18854132
Patent Application
App. No. 18/854,132

METHODS FOR TREATING LYSOSOMAL STORAGE DISEASES

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Patent No.
US None
App. No.
18/854,132
Abstract

This disclosure provides novel animal models for use in studying lysosomal storage diseases and methods of treating lysosomal storage diseases by increasing a level or activity of TPP1.

Claims (45)

1 . A method of treating a subject having a disease or disorder characterized by accumulation of SCMAS in the lysosomes of affected cells, comprising administering to the subject a therapeutically effective amount of an agent that increases a level or activity of TPP1, to reduce or eliminate symptoms caused by the disease or disorder.

2 . The method of claim 1 , wherein the disease or disorder is selected from Juvenile neuronal ceroid lipofuscinosis (CLN3) disease, Variant late infantile neuronal ceroid lipofuscinosis type 5 (CLN5) disease, Variant late infantile neuronal ceroid lipofuscinosis type 6 (CLN6) disease, Neuronal ceroid lipofuscinosis type 7 (CLN7) disease, Northern epilepsy neuronal ceroid lipofuscinosis type 8 (CLN8) disease, Congenital neuronal ceroid lipofuscinosis type 10 (CLN10) disease, Late-onset Neuronal ceroid lipofuscinosis (CLN12) and Kufor-Rakeb syndrome, Sanfilippo D syndrome (mucopolysaccharidosis type HID), and Osteopetrosis autosomal recessive 4 (OPTB4).

3 . The method of any one of the preceding claims , wherein the disease or disorder is characterized by a deficiency in a function of a CLN3 protein.

4 . The method of any one of the preceding claims , wherein the agent reduces the level of accumulation of the SCMAS in the lysosomes of the affected cells.

5 . The method of any one of the preceding claims , wherein the affected cells are neuronal cells.

6 . The method of any one of the preceding claims , wherein the agent comprises a recombinant human TPP1 protein or a nucleic acid molecule comprising a nucleotide sequence encoding TPP1 or a variant thereof.

7 . The method of claim 6 , wherein the TPP1 protein is an inactive proenzyme.

8 . The method of any one of claims 6 to 7 , wherein the TPP1 protein is mannose-6-phosphorylated.

9 . The method of any one of claims 6 to 8 , wherein the therapeutically effective amount of the TPP1 protein is such that the affected cells receive from about 1.0 to about 100 nM of recombinant human TPP1 protein.

10 . The method of any one of claims 6 to 9 , wherein the agent is administered by injection.

11 . The method of any one of claim 10 , wherein the injection is intracranial.

12 . The method of any one of the preceding claims , wherein the agent is administered in a controlled release system.

13 . The method of any one of the preceding claims , wherein the agent is delivered to lysosomes of the affected cells.

14 . The method of any one of the preceding claims , wherein the subject is a human.

15 . An animal model for studying a disease or disorder, comprising: (i) a tripeptidyl peptidase 1 (Tpp1) gene heterozygous knockout (Tpp1 +/− ); and (ii) a Cln3 gene homozygous knockout (Cln3 −/− ), wherein the mouse model has a shortened lifespan compared to a wild type animal.

16 . The animal model of claim 15 , wherein the animal is a mouse.

17 . The animal model of any one of claims 15 to 16 , wherein the disease or disorder is selected from Late-infantile neuronal ceroid lipofuscinosis (CLN2) disease, Juvenile neuronal ceroid lipofuscinosis (CLN3) disease, Variant late infantile neuronal ceroid lipofuscinosis type 5 (CLN5) disease, Variant late infantile neuronal ceroid lipofuscinosis type 6 (CLN6) disease, Neuronal ceroid lipofuscinosis type 7 (CLN7) disease, Northern epilepsy neuronal ceroid lipofuscinosis type 8 (CLN8) disease, Congenital neuronal ceroid lipofuscinosis type 10 (CLN10) disease, Late-onset Neuronal ceroid lipofuscinosis (CLN12) and Kufor-Rakeb syndrome, Sanfilippo D syndrome (mucopolysaccharidosis type HID), and Osteopetrosis autosomal recessive 4 (OPTB4).

18 . The animal model of any one of claims 15 to 17 , wherein the animal has at least 25% reduction in lifespan compared to the wild type animal.

19 . The animal model of any one of claims 15 to 18 , wherein the Tpp1 gene or the Cln3 gene comprises at least one mutation selected from a deletion, an insertion, a frame-shift mutation, re-arrangement or a substitution.

20 . The animal model of claim 19 , wherein the mutation is constitutive.

21 . The animal model of claim 19 , wherein the mutation is conditional.

22 . The animal model of any one of the preceding claims , wherein the Tpp1 gene comprises a deletion of at least a portion of an exon within the Tpp1 gene.

23 . The animal model of any one of claims 15 to 22 , wherein the Tpp1 gene comprises an insertion of neo into intron 11 and an Arg446His missense mutation into exon 11 immediately upstream of the neo insertion.

24 . The animal model of any one of claims 15 to 23 , wherein the Tpp1 gene is located at Chr 7 E3; 7 55.97 cM.

25 . The animal model of any one of claims 15 to 24 , wherein the Cln3 gene comprises a deletion of at least a portion of an exon within the Cln3 gene.

26 . The animal model of any one of claims 15 to 25 , wherein the Cln3 gene comprises a deletion of all or part of exons 1-6 within the Cln3 gene.

27 . The animal model of any one of claims 15 to 26 , wherein the Cln3 gene is located at Chr 7 F3; 7 69.16 cM.

28 . The animal model of any one of claims 15 to 27 , wherein the animal model has an increased level of lysosomal accumulation of subunit c of mitochondrial ATP synthase (SCMAS).

29 . The animal model of claim 28 , wherein the animal model has at least 50% increase in the level of lysosomal accumulation of SCMAS.

30 . The animal model of any one of claims 15 to 29 , wherein the animal model has an increased expression level of Niemann-Pick disease type C1 (NPC1) and/or Cathepsin F (CTSF) or reduced expression of SMPD1.

31 . The animal model of claim 30 , wherein the animal model has at least 40% increase in the expression level of NPC1 and/or CTSF or 40% decrease in the expression level of acid sphingomyelinase (SMPD1).

32 . The animal model of any one of claims 15 to 31 , wherein the animal model is characterized by a deficit in a locomotor activity.

33 . A progeny of the animal model of any one of claims 15 to 32 .

34 . A cell, tissue, or cell line derived from the animal model of any one of claims 15 to 32 or the progeny of claim 33 .

35 . A method of obtaining the animal model of any one of claims 15 to 32 , comprising: (a) cross-breeding an animal with a Tpp1 knockout with a second animal with a Cln3 knockout to obtain an animal with double heterozygotes (Tpp1 +/− ; Cln3 +/− ); and (b) cross-breeding the animal with double heterozygotes by mating Tpp1 −/− ; Cln3 −/− ×Tpp1 −/− ; Cln3 −/− or Tpp1 −/− ; Cln3 −/+ ×Tpp1 +/− ; Cln3 −/− .

36 . A method of identifying an agent for use in treatment of a disease or disorder in a subject, comprising:

(i) administering a candidate agent to the animal model of any one of claims 15 to 32 or the progeny of claim 33 , and assessing an effect of the candidate agent on a phenotype of the animal model; or

(ii) contacting the cell, tissue, or cell line of claim 34 with a candidate agent, and assessing an effect of the candidate agent on the cell, tissue, or cell line.

37 . The method of claim 36 , wherein the disease or disorder is characterized by accumulation of SCMAS in the lysosomes of affected cells of the animal model.

38 . The method of any one of claims 36 to 37 , wherein the disease or disorder is selected from Late-infantile neuronal ceroid lipofuscinosis (CLN2) disease, Juvenile neuronal ceroid lipofuscinosis (CLN3) disease, Variant late infantile neuronal ceroid lipofuscinosis type 5 (CLN5) disease, Variant late infantile neuronal ceroid lipofuscinosis type 6 (CLN6) disease, Neuronal ceroid lipofuscinosis type 7 (CLN7) disease, Northern epilepsy neuronal ceroid lipofuscinosis type 8 (CLN8) disease, Congenital neuronal ceroid lipofuscinosis type 10 (CLN10) disease, Late-onset Neuronal ceroid lipofuscinosis (CLN12) and Kufor-Rakeb syndrome, Sanfilippo D syndrome (mucopolysaccharidosis type HID), and Osteopetrosis autosomal recessive 4 (OPTB4).

39 . The method of claims 36 to 38 , wherein the phenotype is a lifespan of the animal model.

40 . The method of any one of claims 36 to 39 , wherein the effect is characterized by an increase in the lifespan of the animal model.

41 . The method of any one of claims 36 to 40 , wherein the effect is characterized by a decrease in the level of lysosomal accumulation of SCMAS.

42 . The method of any one of claims 36 to 41 , wherein the effect is characterized by a decrease in the expression level of NPC1 and/or CTSF.

43 . The method of any one of claims 36 to 42 , wherein the candidate agent comprises a protein, a peptide, a peptidomimetic, a nucleic acid, or a small molecule.

Assignments (2)
SECURITY INTEREST Recorded Apr 27, 2026
From: BIOMARIN PHARMACEUTICAL INC.; AMICUS THERAPEUTICS, INC.
To: CITIBANK, N.A., AS COLLATERAL AGENT
Reel/Frame 075493/0968 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 14, 2024
From: SLEAT, DAVID; LOBEL, PETER
To: RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY
Reel/Frame 069258/0921 →