IP Library Granted Patent US 12,540,944
Granted Patent B2
US 12,540,944 · App. 18/953,525 · Granted Feb 3, 2026

Recombinant amebocyte clotting factors and uses thereof

Inventors: Masakazu Tsuchiya (Mount Pleasant, SC); Norman R. Wainwright (Skaneateles, NY)
Assignee: Charles River Laboratories, Inc.
G01N33/579B01L3/502715C12Q1/34G01N33/92B01L2200/16B01L2300/0654G01N2333/195G01N2333/942G01N2400/50
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,540,944
App. No.
18/953,525
Granted
Feb 3, 2026
Kind
B2
Abstract

Provided are recombinant amebocyte clotting factors, their formulation and use in determining the presence and/or amount of a microbial endotoxin in a sample. Also provided is a cartridge containing the recombinant amebocyte clotting factors for determining the presence and/or amount of a microbial endotoxin in a sample.

Claims (44)

1 . A cartridge for bacterial endotoxin testing comprising:

(a) a housing defining a fluid inlet port, an optical cell, and a conduit having a fluid contacting surface providing fluid flow communication between the fluid inlet port and the optical cell;

(b) a first composition dried on a first region of the fluid contacting surface of the conduit; and

(c) a second composition dried on a second region of the fluid contacting surface of the conduit;

wherein the first region is spaced apart from the second region, such that, when a liquid sample is applied to the fluid inlet port, the sample traverses the first region and solubilizes the first composition, and then traverses the second region and solubilizes the second composition during transport to the optical cell; and

wherein, the first and second compositions are selected from the group consisting of recombinant Factor B and recombinant Factor C, provided that the first composition is not the same as the second composition.

2 . The cartridge of claim 1 , wherein the Factor C, the Factor B, or the Factor B and Factor C remain substantially inactive until contacted with microbial endotoxin in a liquid sample introduced into the cartridge via the fluid inlet port.

3 . The cartridge of claim 1 , wherein the first or second composition further includes recombinant pro-clotting enzyme.

4 . The cartridge of claim 3 , wherein (i) the recombinant pro-clotting enzyme is a recombinant Limulus polyphemus pro-clotting enzyme; (ii) the recombinant pro-clotting enzyme comprises the amino acid sequence of SEQ ID NO:5; or (iii) the recombinant pro-clotting enzyme is a combination of elements (i) and (ii).

5 . The cartridge of claim 1 , further comprising a third composition comprising recombinant pro-clotting enzyme dried on a third region of the fluid contacting surface of the conduit spaced apart from the first and second regions, wherein the third region is in fluid communication with the first region, the second region, or the first and second regions.

6 . The cartridge of claim 5 , further comprising a fourth composition comprising a chromogenic substrate dried on a fourth region of the fluid contacting surface of the conduit spaced apart from the first, second, and third regions, and wherein the fourth region is in fluid flow communication with one or more of the first region, the second region, or the third region.

7 . The cartridge of claim 6 , wherein the chromogenic substrate is selected from Ac-Ile-Glu-Gly-Arg-pNA (SEQ ID NO:13), wherein Ac is an acetyl group and pNA is a para-nitroaniline group, or Ac-Ile-Glu-Gly-Lys-pNA (SEQ ID NO:14), wherein Ac is an acetyl group and pNA is a para-nitroaniline group.

8 . The cartridge of claim 1 , further comprising a third composition comprising a chromogenic substrate dried on a third region of the fluid contacting surface of the conduit spaced apart from the first and second regions and wherein the third region is in fluid flow communication with the first region, the second region, or the first and second regions.

9 . The cartridge of claim 8 , further comprising a fourth composition comprising a recombinant pro-clotting enzyme dried on a fourth region of the fluid contacting surface of the conduit spaced apart from the first, second, and third regions, and wherein the fourth region is in fluid flow communication with one or more of the first region, the second region, or the third region.

10 . The cartridge of claim 8 , wherein the third region of the fluid contacting surface is positioned between the fluid inlet port and the first region, and the second region of the fluid contacting surface is positioned between the first region and the optical cell.

11 . The cartridge of claim 10 , wherein the first composition on the first region comprises recombinant Factor B and not recombinant Factor C; and the second composition on the second region comprises recombinant Factor C and not recombinant Factor B, and a recombinant pro-clotting enzyme.

12 . The cartridge of claim 11 , wherein (i) the recombinant factor B is a recombinant Limulus polyphemus factor B, (i) the recombinant factor C is a recombinant Limulus polyphemus factor C, and (iii) the recombinant pro-clotting enzyme is a recombinant Limulus polyphemus pro-clotting enzyme; or the cartridge comprises one or more of elements (i), (ii), and (iii).

13 . The cartridge of claim 11 , wherein (i) the recombinant factor B comprises the amino acid sequence of SEQ ID NO:3, (ii) the recombinant factor C comprises the amino acid sequence of SEQ ID NO:1, and (iii) the recombinant pro-clotting enzyme comprises the amino acid sequence of SEQ ID NO:5; or the cartridge comprises one or more of elements (i), (ii) and (iii).

14 . The cartridge of claim 11 , wherein the chromogenic substrate is selected from Ac-Ile-Glu-Gly-Arg-pNA (SEQ ID NO:13), wherein Ac is an acetyl group and pNA is a para-nitroaniline group, or Ac-Ile-Glu-Gly-Lys-pNA (SEQ ID NO:14), wherein Ac is an acetyl group and pNA is a para-nitroaniline group.

15 . The cartridge of claim 8 , wherein the chromogenic substrate is selected from Ac-Ile-Glu-Gly-Arg-pNA (SEQ ID NO:13), wherein Ac is an acetyl group and pNA is a para-nitroaniline group, or Ac-Ile-Glu-Gly-Lys-pNA (SEQ ID NO:14), wherein Ac is an acetyl group and pNA is a para-nitroaniline group.

16 . The cartridge of claim 1 , wherein the first composition on the first region comprises recombinant Factor C and not recombinant Factor B and the second composition on the second region comprises recombinant Factor B and not recombinant Factor C.

17 . The cartridge of claim 1 , wherein the first composition on the first region comprises recombinant Factor B and not recombinant Factor C and the second composition on the second region comprises recombinant Factor C and not recombinant Factor B.

18 . The cartridge of claim 1 , wherein the recombinant factor C:

(i) lacks an (α-2,3)-linked terminal sialic acid;

(ii) is expressed in a GnTI − HEK cell line;

(iii) is recombinant Limulus polyphemus factor C;

(iv) comprises the amino acid sequence of SEQ ID NO:1; or

(v) is a combination of any of elements (i)-(iv).

19 . The cartridge of claim 1 , wherein:

(i) the recombinant factor B is recombinant Limulus polyphemus factor B;

(ii) the recombinant factor B comprises the amino acid sequence of SEQ ID NO:3; or

(iii) the recombinant factor B comprises a combination of elements (i) and (ii).

20 . A cartridge for bacterial endotoxin testing comprising:

(a) a housing defining a fluid inlet port, an optical cell, and a conduit having a fluid contacting surface providing fluid flow communication between the fluid inlet port and the optical cell;

(b) (i) a first composition dried on a first region of the fluid contacting surface of the conduit, the first composition comprising recombinant Factor B, but not recombinant Factor C; and a second composition dried on a second region of the fluid contacting surface of the conduit, the second composition comprising recombinant Factor C and recombinant pro-clotting enzyme, but not recombinant Factor B; or

(ii) a first composition dried on a first region of the fluid contacting surface of the conduit, the first composition comprising recombinant Factor C, but not recombinant Factor B; and a second composition dried on a second region of the fluid contacting surface of the conduit, the second composition comprising recombinant Factor B and recombinant pro-clotting enzyme, but not recombinant Factor C; and

(c) a third composition dried on a third region of the fluid contacting surface of the conduit, the third composition comprising a chromogenic substrate;

wherein the first region is spaced apart from the second region, such that, when a liquid sample is applied to the fluid inlet port, the sample traverses the first region and solubilizes the first composition, and then traverses the second region and solubilizes the second composition during transport to the optical cell;

wherein the third region of the fluid contacting surface is positioned between the fluid inlet port and first region, and the second region is positioned on the cartridge or fluid contacting surface between the first region and the optical cell;

wherein the recombinant factor B is a recombinant Limulus polyphemus factor B, the recombinant factor C is a recombinant Limulus polyphemus factor C, and the recombinant pro-clotting enzyme is a recombinant Limulus polyphemus pro-clotting enzyme.

21 . The cartridge of claim 20 , wherein the first composition dried on the first region of the fluid contacting surface of the conduit comprises recombinant Factor B, but not recombinant Factor C, and the second composition dried on the second region of the fluid contacting surface of the conduit comprises recombinant Factor C and recombinant pro-clotting enzyme, but not recombinant Factor B.

22 . The cartridge of claim 21 , wherein the chromogenic substrate is selected from Ac-Ile-Glu-Gly-Arg-pNA (SEQ ID NO:13), wherein Ac is an acetyl group and pNA is a para-nitroaniline group; or Ac-Ile-Glu-Gly-Lys-pNA (SEQ ID NO:14), wherein Ac is an acetyl group and pNA is a para-nitroaniline group.

23 . The cartridge of claim 20 , wherein the first composition dried on the first region of the fluid contacting surface of the conduit comprises recombinant Factor C, but not recombinant Factor B, and the second composition dried on the second region of the fluid contacting surface of the conduit comprises recombinant Factor B and recombinant pro-clotting enzyme, but not recombinant Factor C.

24 . The cartridge of claim 23 , wherein the chromogenic substrate is selected from Ac-Ile-Glu-Gly-Arg-pNA (SEQ ID NO:13), wherein Ac is an acetyl group and pNA is a para-nitroaniline group; or Ac-Ile-Glu-Gly-Lys-pNA (SEQ ID NO:14), wherein Ac is an acetyl group and pNA is a para-nitroaniline group.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 31, 2024
From: TSUCHIYA, MASAKAZU; WAINWRIGHT, NORMAN R.
To: CHARLES RIVER LABORATORIES, INC.
Reel/Frame 069706/0432 →
Continuity (3)
Continuation PCTUS2024032663 · Jun 5, 2024
Provisional Application 63506271 · Jun 5, 2023
Related Publication 20250085289A1 · Mar 13, 2025
References Cited (103)
US 4322217A · Dikeman · 1982 [cited by applicant]
US 5155032A · Tanaka et al. · 1992 [cited by applicant]
US 5179006A · Matuura et al. · 1993 [cited by applicant]
US 5310657A · Berzofsky · 1994 [cited by applicant]
US 5318893A · Matuura et al. · 1994 [cited by applicant]
US 5474984A · Tanaka et al. · 1995 [cited by applicant]
US 5605806A · Tanaka et al. · 1997 [cited by applicant]
US 5641643A · Tanaka et al. · 1997 [cited by applicant]
US 5712144A · Ding et al. · 1998 [cited by applicant]
US D390661S · Foggia · 1998 [cited by applicant]
US 5716834A · Ding et al. · 1998 [cited by applicant]
US 5858706A · Ding et al. · 1999 [cited by applicant]
US 5985590A · Ding et al. · 1999 [cited by applicant]
US 6077946A · Iwanaga et al. · 2000 [cited by applicant]
US 6270982B1 · Jordan et al. · 2001 [cited by applicant]
US 6391570B1 · Jordan et al. · 2002 [cited by applicant]
US D472324S · Rumore et al. · 2003 [cited by applicant]
US 6645724B1 · Ding et al. · 2003 [cited by applicant]
US 7329538B2 · Wainwright et al. · 2008 [cited by applicant]
US 7479375B2 · Wainwright et al. · 2009 [cited by applicant]
US 7673704B2 · Phan et al. · 2010 [cited by applicant]
US 7901899B1 · Wainwright et al. · 2011 [cited by applicant]
US 7939291B2 · Wainwright et al. · 2011 [cited by applicant]
US 7968280B2 · Wainwright et al. · 2011 [cited by applicant]
US 8440394B2 · Wainwright et al. · 2013 [cited by applicant]
US 10119969B2 · Wainwright et al. · 2018 [cited by applicant]
US 10473663B2 · Tsuchiya · 2019 [cited by applicant]
US 10473664B2 · Tsuchiya · 2019 [cited by applicant]
US 11221335B2 · Tsuchiya · 2022 [cited by applicant]
US 11236318B2 · Mizumura et al. · 2022 [cited by applicant]
US 11499177B2 · Kobayashi et al. · 2022 [cited by applicant]
US 12158471B2 · Wainwright et al. · 2024 [cited by applicant]
US 20090286692A1 · Wainwright et al. · 2009 [cited by applicant]
US 20180264463A1 · Biesbrouck · 2018 [cited by examiner]
US 20190241629A1 · Mizumura et al. · 2019 [cited by applicant]
US 20190270977A1 · Mizumura et al. · 2019 [cited by applicant]
US 20210215695A1 · Ogura et al. · 2021 [cited by applicant]
US 20210363564A1 · Kobayashi et al. · 2021 [cited by applicant]
US 20240125789A1 · Wainwright et al. · 2024 [cited by applicant]
EP 2930241A1 · 2015 [cited by applicant]
EP 3591049A1 · 2020 [cited by applicant]
EP 3441466B1 · 2020 [cited by applicant]
JP 2019004705A · 2019 [cited by applicant]
WO 2566804 · 2005 [cited by examiner]
WO WO2012118226 · 2012 [cited by examiner]
WO WO2018074498A1 · 2018 [cited by applicant]
WO WO2018074498 · 2018 [cited by examiner]
WO WO2018159771A1 · 2018 [cited by applicant]
WO WO2020071229A1 · 2020 [cited by applicant]
WO 3145414 · 2021 [cited by examiner]
WO WO2022174082A1 · 2022 [cited by applicant]
Andersen, Dana C, and Lynne Krummen. “Recombinant protein expression for therapeutic applications.” Current opinion in biotechnology vol. 13,2 (2002): 117-23. [cited by applicant]
Breitbach, K. and Jarvis, D. L., “Improved glycosylation of a foreign protein by Tn-5B1-4 cells engineered to express mammalian glycosyltransferases,” Biotechnol Bioeng. Aug. 5, 2001;74(3):230-9. [cited by applicant]
Carlesso, E. et al., “The rule regulating pH changes during crystalloid infusion”, Intensive Care Med., 2011, 37(3): 461-468. [cited by applicant]
Chen, S., et al., “Production of Recombinant Proteins in Mammalian Cells”, Current Protocols in Protein Science, 1998, 5.10.1-5.10.41. [cited by applicant]
Choo, K.H., et al., “A comprehensive assessment of N-terminal signal peptides prediction methods”, BMC Bioinformatics, 2009, 1 0(Suppl 15):S2. [cited by applicant]
Croset et al. “Differences in the glycosylation of recombinant proteins expressed in HEK and CHO cells.” Journal of biotechnology vol. 161,3 (2012): 336-48. [cited by applicant]
Demain and Vaishnav, “Production of recombinant proteins by microbes and higher organisms.” Biotechnology advances vol. 27,3 (2009): 297-306. [cited by applicant]
Ding, J.L. and Navas, M.A.A, “Molecular cloning and sequence analysis of Factor C cDNA from the Singapore horseshoe crab, [cited by applicant]
Ding, Jeak L. and Ho, Bow, “A new era in pyrogen testing”, Trends in Biotech., 2001, 19(8): 277-281. [cited by applicant]
Dubczak et al, “Evaluation of limulus amebocyte lysate and recombinant endotoxin alternative assays for an assessment of endotoxin detection specificity.” European journal of pharmaceutical sciences : official journal o… [cited by applicant]
Dwarakanath et al., “Recombinant COS-1 Cells express Carcinoscorpius rotundicauda Factor C,” Biotechnology Letters, 19(4): 357-361, 1997. [cited by applicant]
Dwarakanath et al., “The Cys-rich and EGF-like domains of Carcinoscorpius rotundicauda Factor C yields soluble fusion with GFP,” Biotechnology Letters, 19(1): 1147-1150, 1997. [cited by applicant]
Gerngross, Tillman U. “Advances in the production of human therapeutic proteins in yeasts and filamentous fungi.” Nature biotechnology vol. 22,11 (2004): 1409-14. [cited by applicant]
Grallert et al. “EndoLISA®: A novel and reliable method for endotoxin detection” Nature Methods, 8:884, 2011. [cited by applicant]
Gray, David, “Overview of Protein Expression by Mammalian Cells”, Current Protocols in Protein Science, 1997, 5.9.1-5.9.18. [cited by applicant]
Harada-Suzuki, T. et al., “Further Studies on the Chromogenic Substrate Assay Method for Bacterial Endotoxins Using Horseshoe Crab ( [cited by applicant]
Hashiguchi et al., “Expression of Recombinant Protein Using Cultured Human Cells—Standard Protocol by 293-type cells”—, PSSJ Archives, 1, e017 (2008); with English Translation. [cited by applicant]
Hollister, J. R. and Jarvis, D. L., “Engineering lepidopteran insect cells for sialoglycoprotein production by genetic transformation with mammalian beta 1,4-galactosyltransferase and alpha 2,6-sialyltransferase genes,”… [cited by applicant]
Hooker, A. D. et al, “Constraints on the transport and glycosylation of recombinant IFN-gamma in Chinese hamster ovary and insect cells,” Biotechnol Bioeng. Jun. 5, 1999;63(5):559-572. [cited by applicant]
Hossler, Patrick et al. “Optimal and consistent protein glycosylation in mammalian cell culture.” Glycobiology vol. 19,9 (2009): 936-49. [cited by applicant]
Inamori et al., “A horseshoe crab receptor structurally related to [cited by applicant]
International Search Report for International Application No. PCT/US2024/032663 mailed Jul. 22, 2024 (6 pages). [cited by applicant]
Iwanaga et al., “Biochemical principle of Limulus test for detecting bacterial endotoxins,” Proc. Jpn. Acd., Ser. B., 83:110-119, 2007. [cited by applicant]
Kawabata et al., “The lipopolysaccharide-activated innate immune response network of the horseshoe crab,” Invertebrate Survival Journal, 6:59-77, 2009. [cited by applicant]
Kingston et al., “Amplification Using CHO Cell Expression Vectors,” Unit 16.23 in Current Protocols in Molecular Biology, John Wiley and Sons (1993), pp. 16.23.1-16.23.13. [cited by applicant]
Kobayashi et al., “Factor B Is the Second Lipopolysaccharide-binding Protease Zymogen in the Horseshoe Crab Coagulation Cascade.” The Journal of biological chemistry vol. 290,31 (2015): 19379-86. [cited by applicant]
Kobayashi et al., “The N-terminal Arg residue is essential for autocatalytic activation of a lipopolysaccharide-responsive protease zymogen.” The Journal of biological chemistry vol. 289,37 (2014): 25987-95. [cited by applicant]
Koshiba et al. “A structural perspective on the interaction between lipopolysaccharide and factor C, a receptor involved in recognition of Gram-negative bacteria.” The Journal of biological chemistry vol. 282,6 (2007): … [cited by applicant]
Levin et al. (1968), “Clottable Protein in Limulus: Its Localization and Kinetics of Its Coagulation by Endotoxin,” Thromb. Diath. Haemorrh. 19: 186. [cited by applicant]
Lis et al. (1993), “Protein Glycosylation: Structural and functional aspects,” Eur. J. Biochem. 218:1-27. [cited by applicant]
Loverock et al., “A Recombinant Factor C Procedure for the Detection of Gram-negative Bacterial Endotoxin,” Pharmacopeial Forum, 35(6):1613-1621. [cited by applicant]
Mizumura, Hikaru et al. “Genetic engineering approach to develop next-generation reagents for endotoxin quantification.” Innate immunity vol. 23,2 (2017): 136-146. [cited by applicant]
Muroi et al., “Application of a Recombinant Three-Factor Chromogenic Reagent, PyroSmart, for Bacterial Endotoxins Test Filed in the Pharmacopeias,” Biol. Pharm. Bull, 42, 2024-2037, 2019. [cited by applicant]
Muta et al., “Limulus Factor C,” J. Biol. Chem., 266(10): 6554-6561, 1991. [cited by applicant]
Nakamura et al. “Intracellular proclotting enzyme in limulus (Tachypleus tridentatus) hemocytes: its purification and properties.” Journal of biochemistry vol. 97,6 (1985): 1561-74. [cited by applicant]
Nakamura et al. “Purification and properties of intracellular clotting factor, factor B, from horseshoe crab ( [cited by applicant]
Nakamura et al. “Lipopolysaccharide-sensitive serine-protease zymogen (factor C) found in Limulus hemocytes. Isolation and characterization.” European journal of biochemistry vol. 154,3 (1986): 511-521. [cited by applicant]
Navas et al., “Inactivation of Factor C by Dimethyl Sulfoxide Inhibits Coagulation of the Carcinscorpius Amoebocyte Lysate,” Biochemistry International, 21 (5): 805-813; 1990. [cited by applicant]
Nettleship, Joanne E., “Structural Biology of Glycoproteins”, Glycosylation, 2012, p. 41-62. Available from: https://www.intechopen.com/books/glycosylation/structural-biologyof- glycoproteins. [cited by applicant]
Nielson, H., et al., “Identification of prorkaryotic and eukaryotic signal peptides and prediction of their cleavage sites”, Protein EnQineerinQ, 1997, 10(1 ): 1-6. [cited by applicant]
Parodi, A J. “Protein glucosylation and its role in protein folding.” Annual review of biochemistry vol. 69 (2000): 69-93.Viswanathan et al. (2005) Biochem. 44:7526-7534. [cited by applicant]
Prior, 1990 “Clinical Applications of the Limulus Amebocyte Lysate Test” CRC Press 28-36 and 159-166. [cited by applicant]
Rietschel et al., “Bacterial endotoxin: Molecular relationship of structure to activity and function,” FASEB J., 8:217-225, 1994. [cited by applicant]
Thomas, Philip, and Trevor G Smart. “HEK293 cell line: a vehicle for the expression of recombinant proteins.” Journal of pharmacological and toxicological methods vol. 51,3 (2005):187-200. [cited by applicant]
Tokunaga et al., “Further Studies on Lipopolysaccharide-Sensitive Serine Protease Zymogen (Factor C): Its Isolation from Limulus polyphemus Hemocytes and Identification as an Intracellular Zymogen Activated by a-Chymotr… [cited by applicant]
Tomiya et al. “Comparing N-glycan processing in mammalian cell lines to native and engineered lepidopteran insect cell lines.” Glycoconjugate journal vol. 21,6 (2004): 343-60. [cited by applicant]
Tomiya et al. “Humanization of lepidopteran insect-cell-produced glycoproteins.” Accounts of chemical research vol. 36,8 (2003): 613-20. [cited by applicant]
Viswanathan, et al., “Engineering intracellular CMP-sialic acid metabolism into insect cells and methods to enhance its generation,” Biochemistry, May 24, 2005;44(20):7526-34. [cited by applicant]
Wang et al., “Functional expression of full length Limulus Factor C in stably transformed Sf9 cells,” Biotechnology Letters, 23:71-76, 2001. [cited by applicant]
Wang et al., “Modular arrangement and secretion of a multidomain Serine Protease,” J. Biol. Chem., 277(39):36363-36372, 2002. [cited by applicant]
Written Opinion for International Application No. PCT/US2024/032663 mailed Jul. 22, 2024 (4 pages). [cited by applicant]
Piehler et al., “Comparison of LAL and rFC Assays—Participation in a Proficiency Test Program between 2014 and 2019,” Microorganisms, Mar. 16, 2020;8(3):418. [cited by applicant]