IP Library Granted Patent US 8,063,025
Granted Patent B2
US 8,063,025 · App. 12/313,992 · Granted Nov 22, 2011

Nucleoside prodrugs and uses thereof

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Quick Facts
Patent No.
US 8,063,025
App. No.
12/313,992
Granted
Nov 22, 2011
Kind
B2
Abstract

Compounds having the formula I or II wherein R 1 , R 2 , B, and V are as defined herein are Hepatitis C virus NS5b polymerase inhibitors. Also disclosed are compositions and methods for treating an HCV infection and inhibiting HCV replication.

Claims (79)

1. A compound of general formula I or II

wherein V is phenyl or pyridinyl said phenyl or pyridinyl optionally substituted with one to three substituents selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 alkoxy, or cyano;

B is

R 1 and R 2 are independently selected from H and or COR 4 ;

Y is O or NH;

R 3 is C 1 -C 6 alkyl or COR 4 and,

R 4 is C 1-6 alkyl, C 1-3 alkoxy-C 1-6 alkyl, C 3-6 cycloalkyl, C 3-6 cycloalkyl-C 1-3 alkyl, C 1-6 alkoxy or heteroaryl wherein the heteroaryl is a five-membered ring containing one or two heteroatoms selected from nitrogen, oxygen or sulfur or pyridine or a six-membered ring with one or two nitrogen atoms; or,

a pharmaceutically acceptable salt thereof.

2. A compound according to formula I of claim 1 wherein B is B-1.

3. A compound according to claim 2 wherein V is optionally substituted phenyl, R 1 and R 2 are independently hydrogen or COR 4 ; and R 4 is C 1-6 alkyl.

4. A compound according to formula II of claim 1 .

5. A compound according to formula II of claim 3 wherein V is optionally substituted phenyl and B is B-1.

6. A compound according to claim 1 wherein B is B-2.

7. A compound according to claim 6 wherein V is optionally substituted phenyl.

8. A compound according to claim 1 wherein B is B-3.

9. A compound according to claim 8 wherein V is optionally substituted phenyl.

10. A compound according to claim 1 selected from the group consisting of:

4′-azido-cis-5′-O-[4-(R,S)-(3-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-bromophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-bromo-4-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-chloro-4-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-phenyl-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(4-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(4-bromophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-bromophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-bromo-5-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-( 2 ,4-dichlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-chloro-6-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2,5-dichlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2,4-difluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-bromo-6-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-chloro-4-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2,3-difluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-{4-(R,S)-[3,5-di-(trifluoromethyl)phenyl]-2-oxo-1,3,2-dioxaphosphorinan-2-yl}uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-trifluoromethylphenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-trifluoromethylphenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3-cyanophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(4-trifluoromethylphenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(3,5-dichlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(S)-(3,5-difluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(S)-(pyrid-4-yl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine, hydrochloride salt;

4′-azido-cis-5′-O-[4-(R,S)-(3,4-dichlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(pyrid-3-yl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine, hydrochloride salt 4′-azido-cis-5′-O-[4-(R,S)-(3-bromopyrid-5-yl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine, hydrochloride salt 4′-azido-cis-5′-O-[4-(R,S)-(2-fluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2,6-difluorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2,6-dichlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(R,S)-(2-fluoro-4-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 4′-azido-cis-5′-O-[4-(R,S)-(2-fluoro-4-bromophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

2′3′-O-(3-methylbutanoyl)-4′-azido-cis-5′-O-[4-(R,S)-(3-cyanophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-propionate;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -pivaloyl-uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1 ,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -pentanoyl-uridine;

2′,3′-O-(3-methylbutanoyl)-4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

2′,3′-O-bis-isobutanoyl-4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

2′,3′-O-bis-n-butanoyl-4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1 ,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -(cyclopropylcarbonyl)uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1 ,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -(2-cyclopropylacetyl)-uridine;

2′,3′-O-bis-(oxazole-4-carbonyl)-4′-azido-cis-5′-o-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine;

2′,3′-O-bis-(furan-3-carbonyl)-4′-azido-cis-5′-o-[4-(S)-(3-chlorophenyl) -2-oxo- 1 , 3 , 2 -dioxaphosphorinan-2-yl]uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -(2-ethoxyacetyl)-uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3 ,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -(2-methoxy-acetyl)-uridine;

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-(ethoxycarbonate);

4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-(isopropoxycarbonate);

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis-(pyrrole-2-carboxyl)uridine;

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis-(pyrazol-5-carboxyl)-uridine;

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis -(pyridine-3-carboxyl)-uridine;

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis-(2-ethoxyacetyl)-uridine;

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]-2′,3′-O-bis-(2-methoxy-acetyl)-uridine;

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-(ethoxycarbonate);

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-(isopropoxycarbonate); and,

and stereoisomers thereof.

11. A compound according to claim 1 which compound is:

4′-Azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3 ,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-propionate, 4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3 ,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-valeroate, 4′-azido-cis-5′-O-[4-(S)-(3-chlorophenyl)-2-oxo-1,3 ,2-dioxaphosphorinan-2-yl]uridine 2′,3′-O-bis-isovaleroate.

12. A method for treating a disease caused by the Hepatitis C Virus (HCV) virus comprising administering to a patient in need thereof, a therapeutically effective quantity of a compound according to claim 1 .

13. The method of claim 12 further co-comprising administering at least one immune system modulator and/or at least one antiviral agent that inhibits replication of HCV.

14. The method of claim 13 wherein the immune system modulator is an interferon, interleukin, tumor necrosis factor or colony stimulating factor.

15. The method of claim 14 wherein the immune system modulator is an interferon or chemically derivatized interferon.

16. The method of claim 13 wherein the antiviral compound is selected from the group consisting of a HCV protease inhibitor, another HCV polymerase inhibitor, a HCV helicase inhibitor, a HCV primase inhibitor and a HCV fusion inhibitor.

17. A method of inhibiting replication in HCV comprising administering a therapeutically effective quantity of a compound according to claim 1 .

18. A pharmaceutical composition comprising a therapeutically effective quantity of a compound according to claim 1 admixed with at least one pharmaceutically acceptable carrier, diluent or excipient.

Assignments (5)
SECURITY INTEREST Recorded Oct 18, 2023
From: CYDEX PHARMACEUTICALS, INC.; LIGAND PHARMACEUTICALS INCORPORATED; METABASIS THERAPEUTICS, INC.; PFENEX INC.
To: CITIBANK, N.A., AS ADMINISTRATIVE AGENT
Reel/Frame 065271/0025 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 24, 2011
From: ROCHE PALO ALTO LLC
To: METABASIS THERAPEUTICS, INC.
Reel/Frame 025860/0636 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNEE PREVIOUSLY RECORDED ON REEL 022511 FRAME 0111. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNEE TO BE ROCHE PALO ALTO LLC. Recorded Oct 9, 2009
From: SMITH, DAVID BERNARD
To: ROCHE PALO ALTO LLC
Reel/Frame 023353/0549 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 15, 2009
From: HECKER, SCOTT J.; REDDY, K. RAJA; BOOKSER, BRETT C.; SUN, ZHILI
To: METABASIS THERAPEUTICS, INC.
Reel/Frame 022825/0509 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 6, 2009
From: SMITH, DAVID BERNARD
To: METABASIS THERAPEUTICS, INC.
Reel/Frame 022511/0111 →