IP Library Granted Patent US 8,084,457
Granted Patent B2
US 8,084,457 · App. 10/572,043 · Granted Dec 27, 2011

Pharmaceutically active 4,6-disubstituted aminopyrimidine derivatives as modulators of protein kinases

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Quick Facts
Patent No.
US 8,084,457
App. No.
10/572,043
Granted
Dec 27, 2011
Kind
B2
Abstract

The present invention relates to 4,6-disubstituted aminopyrimidine derivatives and/or pharmaceutically acceptable salts thereof, the use of these derivatives as pharmaceutically active agents, especially for the prophylaxis and/or treatment of infectious diseases, including opportunistic diseases, prion diseases, immunological diseases, autoimmune diseases, bipolar and clinical disorders, cardiovascular diseases, cell proliferative diseases, diabetes, inflammation, transplant rejections, erectile dysfunction, neurodegenerative diseases and stroke, and pharmaceutical compositions containing at least one of said 4,6-di substituted aminopyrimidine derivatives and/or pharmaceutically acceptable salts thereof. Furthermore, the present invention relates to the use of said 4,6-disubstituted aminopyrimidine derivatives as inhibitors for a protein kinase and a medium comprising at least one of said 4,6-disubstituted aminopyrimidine derivatives in an immobilized form and the use of said medium for enriching, purifying and/or depleting nucleotide binding proteins which bind to the immobilized 4,6-disubstituted aminopyrimidine derivatives.

Claims (53)

1. A compound having the general formula (I)

wherein

R 1 , R 2 , and R 4 are each hydrogen;

R 3 is a phenyl substituted with between one and four R S each independently selected from, Sub, —OR S1 , or —N(R S1 ) 2 , wherein each R S1 is independently selected from linear or branched C 5 -C 6 alkyl;

R 5 is a phenyl substituted with between zero and four R A each independently selected from Sub, —OR A1 , or —N(R A1 ) 2 , wherein each R A1 is independently selected from linear or branched C 5 -C 6 alkyl;

R 6 is hydrogen or is selected from the group consisting of:

linear or branched C 1 -C 8 alkyl, aryl, HA, HC, pyrrolidinyl, C 3 -C 8 cycloalkyl, cyclohexyl, cyclopentyl, C 5 -C 12 bicycloalkyl, adamantyl, in each case optionally substituted with Sub, or R 6 is selected from —(CH 2 ) q -group, wherein q is an integer from 1 to 3, under the proviso, if R 6 is selected to be a methylene chain —(CH 2 ) q -group, R 17 or R 19 are selected to be a methylene chain —(CH 2 ) s -group, wherein s is an integer from 1 to 3 or a —(CH 2 ) t A-group, t is an integer from 1 to 3 and A is selected from O or N, respectively, and R 6 and R 17 or R 6 and R 19 form together a 5 to 8 membered ring system,

or R 6 represents —(CH 2 ) p —Z, wherein p is an integer from 0 to 6 and Z is selected from the group comprising:

aryl, HA, HC, linear or branched C 1 -C 6 alkyl, in each case optionally substituted with Sub, and —N(R 7 R 8 ), wherein R 7 and R 8 represent independently from each other —H, or linear or branched C 1 -C 6 alkyl, or Z is selected from —(CR 9 R 10 R 11 ), wherein R 9 , R 10 and R 11 are independently of each other hydrogen or selected from the group consisting of:

linear or branched C 1 -C 8 alkyl, aryl in each case optionally substituted with Sub or —N(R 12 R 13 ),

wherein R 12 and R 13 represent independently of each other —H or linear or branched C 1 -C 6 alkyl optionally substituted with Sub,

under the proviso, if Z represents —(CR 9 R 10 R 11 ) as defined above, p is selected to be an integer from 0 to 6, and

if Z is selected from aryl, HA, HC, or —N(R 7 R 8 ) as defined above, p is selected to be an integer from 1 to 6;

L is in the meta- or para-position of the phenyl represented by R 5 and selected from the group comprising:

—NR 14 —SO 2 —, NR 14 —SO—,

wherein R 14 is selected from —H, linear or branched C 1 -C 6 alkyl, —SO 2 —R 15 , wherein R 15 is selected from linear or branched C 1 -C 6 alkyl or C 1 -C 6 alkylene, or R 14 represents —(CH 2 ) r —COOR 16 , wherein r is an integer from 0 to 6 and R 16 is selected from —H or linear or branched C 1 -C 6 alkyl,

—NR 17 —CO—,

wherein R 17 is selected from —H, linear or branched C 1 -C 6 alkyl, or a —(CH 2 ) s -group,

wherein s is an integer from 1 to 3, and

wherein if R 6 and R 17 both represent a methylene chain group, R 6 and R 17 may form together a 5 to 8 membered ring system:

—SO 2 —NR 18 —,

wherein R 18 is selected from —H, or linear or branched C 1 -C 6 alkyl,

—CO—NR 19 —,

wherein R 19 is selected from —H, linear or branched C 1 -C 6 alkyl, or a —(CH 2 ) t -A- group, wherein t is an integer from 1 to 3 and A is selected from N or O, and wherein if R 6 represents a —(CH 2 ) q -group and R 19 represents a —(CH 2 ) t -A- group, R 6 and R 19 may form together a 5 to 8 membered ring system

and m is 1,

Sub is independently selected from —OH, —OCH 3 , —OC 2 H 5 , —OC 3 H 7 , —O-cyclo-C 3 H 5 , —OCH(CH 3 ) 2 , —OC(CH 3 ) 3 , —OC 4 H 9 , —OPh, —OCH 2 Ph, —OCPh 3 , —SH, —SCH 3 , —SC 2 H 5 , —SC 3 H 7 , —S-cyclo-C 3 H 5 , —SCH(CH 3 ) 2 , —SC(CH 3 ) 3 , —NO 2 , —F, —Cl, —Br, —I, —N 3 , —CN, —OCN, —NCO, —SCN, —NCS, —CHO, —COCH 3 , —COC 2 H 5 , —COC 3 H 7 , —CO-cyclo-C 3 H 5 , —COCH(CH 3 ) 2 , —COC(CH 3 ) 3 , —COOH, —COCN, —COOCH 3 , —COOC 2 H 5 , —COOC 3 H 7 , —COO-cyclo-C 3 H 5 , —COOCH(CH 3 ) 2 , —COOC(CH 3 ) 3 , —OOC—CH 3 , —OOC—C 2 H 5 , —OOC—C 3 H 7 , —OOC-cyclo-C 3 H 5 , —OOC—CH(CH 3 ) 2 , —OOC—C(CH 3 ) 3 , —CONH 2 , —CONHCH 3 , —CONHC 2 H 5 , —CONHC 3 H 7 , —CONH-cyclo-C 3 H 5 , —CONH[CH(CH 3 ) 2 ], —CONH[C(CH 3 ) 3 ], —CON(CH 3 ) 2 , —CON(C 2 H 5 ) 2 , —CON(C 3 H 7 ) 2 , —CON(cyclo-C 3 H 5 ) 2 , —CON[CH(CH 3 ) 2 ] 2 , —CON[C(CH 3 ) 3 ] 2 , —NH 2 , —NHCH 3 , —NHC 2 H 5 , —NHC 3 H 7 , —NH-cyclo-C 3 H 5 , —NHCH(CH 3 ) 2 , —NHC(CH 3 ) 3 , —N(CH 3 ) 2 , —N(C 2 H 5 ) 2 , —N(C 3 H 7 ) 2 , —N(cyclo-C 3 H 5 ) 2 , —N[CH(CH 3 ) 2 ] 2 , —N[C(CH 3 ) 3 ] 2 , —SOCH 3 , —SOC 2 H 5 , —SOC 3 H 7 , —SO-cyclo-C 3 H 5 , —SOCH(CH 3 ) 2 , —SOC(CH 3 ) 3 , —SO 2 CH 3 , —SO 2 C 2 H 5 , —SO 2 C 3 H 7 , —SO2-cyclo-C 3 H 5 , —SO 2 CH(CH 3 ) 2 , —SO 2 C(CH 3 ) 3 , —SO 3 H, —SO 3 CH 3 , —SO 3 C 2 H 5 , —SO 3 C 3 H 7 , —SO 3 -cyclo-C 3 H 5 , —SO 3 CH(CH 3 ) 2 , —SO 3 C(CH 3 ) 3 , —OCF 3 , —OC 2 F 5 , —O—COOCH 3 , —O—COOC 2 H 5 , —O—COOC 3 H 7 , —O—COO-cyclo-C 3 H 5 , —O—COOCH(CH 3 ) 2 , —O—COOC(CH 3 ) 3 , —NH—CO—NH 2 , —NH—CO—NHCH 3 , —NH—CONHC 2 H 5 , —NH—CO—NHC 3 H 7 , —NH—CO—NH-cyclo-C 3 H 5 , —NH—CO—NH[CH(CH 3 ) 2 ], —NH—CO—NH[C(CH 3 ) 3 ], —NH—CO—N(CH 3 ) 2 , —NH—CO—N(C 2 H 5 ) 2 , —NH—CO—N(C 3 H 7 ) 2 , —NH—CO—N(cyclo-C 3 H 5 ) 2 , —NH—CO—N[CH(CH 3 ) 2 ] 2 , —NH—CO—N[C(CH 3 ) 3 ] 2 , —NH—CS—NH 2 , —NH—CS—NHCH 3 , —NH—CS—NHC 2 H 5 , —NH—CS—NHC 3 H 7 , —NH—CS—NH-cyclo-C 3 H 5 , —NH—CS—NH[CH(CH 3 ) 2 ], —NH—CS—NH[C(CH 3 ) 3 ], —NH—CS—N(CH 3 ) 2 , —NH—CS—N(C 2 H 5 ) 2 , —NH—CS—N(C 3 H 7 ) 2 , —NH—CS—N(cyclo-C 3 H 5 ) 2 , —NH—CS—N[CH(CH 3 ) 2 ] 2 , —NH—CS—N[C(CH 3 ) 3 ] 2 , —NH—C(═NH)—NH 2 , —NH—C(═NH)NHCH 3 , —NH—C(═NH)—NHC 2 H 5 , —NH—C(═NH)—NHC 3 H 7 , —NH—C(═NH)—NH-cyclo-C 3 H 5 , —NH—C(═NH)—NH[CH(CH 3 ) 2 ], —NH—C(═NH)—NH[C(CH 3 ) 3 ], —NH—C(═NH)—N(CH 3 ) 2 , —NH—C(═NH)—N(C 2 H 5 ) 2 , —NH—C(═NH)—N(C 3 H 7 ) 2 , —NH—C(═NH)—N(cyclo-C 3 H 5 ) 2 , —NH—C(═NH)—N[CH(CH 3 ) 2 ] 2 , —NH—C(═NH)—N[C(CH 3 ) 3 ] 2 , —O—CO—NH 2 , —O—CO—NHCH 3 , —O—CO—NHC 2 H 5 , —O—CO—NHC 3 H 7 , —O—CO—NH-cyclo-C 3 H 5 , —O—CO—NH[CH(CH 3 ) 2 ], —O—CO—NH[C(CH 3 ) 3 ], —O—CO—N(CH 3 ) 2 , —O—CO—N(C 2 H 5 ) 2 , —O—CO—N(C 3 H 7 ) 2 , —O—CO—N(cyclo-C 3 H 5 ) 2 , —O—CO—N[CH(CH 3 ) 2 ] 2 , —O—CO—N[C(CH 3 ) 3 ] 2 , —O—CO—OCH 3 , —O—CO—OC 2 H 5 , —O—CO—OC 3 H 7 , —O—CO—O-cyclo-C 3 H 5 , —O—CO—OCH(CH 3 ) 2 , —O—CO—OC(CH 3 ) 3 , —CH 2 F—CHF 2 , —CF 3 , —CH 2 Cl, —CHCl 2 , —CCl 3 , —CH 2 Br—CHBr 2 , —CBr 3 , —CH 2 I—CHI 2 , —Cl 3 , —CH 2 —CH 2 F, —CH 2 —CHF 2 , —CH 2 —CF 3 , —CH 2 —CH 2 Cl, —CH 2 —CHCl 2 , —CH 2 —CCl 3 , —CH 2 —CH 2 Br —CH 2 —CHBr 2 , —CH 2 —CBr 3 , —CH 2 —CH 2 I—CH 2 —CHI 2 , —CH 2 —Cl 3 , —CH 3 , —C 2 H 5 , —C 3 H 7 , -cyclo-C 3 H 5 , —CH(CH 3 ) 2 , —C(CH 3 ) 3 , —C 4 H 9 , —CH 2 —CH(CH 3 ) 2 , —CH(CH 3 )—C 2 H 5 , —C(CH 3 ) 3 , -Ph, —CH 2 -Ph, —CPh 3 , —CH═CH 2 , —CH 2 CH═CH 2 , —C(CH 3 )═CH 2 , —CH═CHCH 3 , —C 2 H 4 —CH═CH 2 , —CH═C(CH 3 ) 2 , —CCCH 3 , or —CH 2 —CCH,

HA is a partially or fully unsaturated 5 to 10 membered mono- or bicyclic ring system, containing one to three heteroatoms independently selected from oxygen, sulfur or nitrogen independently;

HC is a 5 to 10 membered mono- or bicyclic ring system, containing one to three heteroatoms independently selected from oxygen, sulfur or nitrogen; or a stereoisomeric form thereof; or a pharmaceutically acceptable salt thereof.

2. The compound according to claim 1 , wherein each RS is independently selected from —F, —Cl, —Br, I, —OR S2 , or N(R S2 ) 2 , wherein each R S2 is independently selected from hydrogen or linear or branched C 1 -C 6 alkyl or benzyl.

3. The compound according to claim 1 , wherein the phenyl of R 3 is substituted with one R S selected from —OCH 3 , —OC 2 H 5 , —OC 3 H 7 , —O-cyclo-C 3 H 5 , —OCH(CH 3 ) 2 , —OC(CH 3 ) 3 , or —OC 4 H 9 .

4. The compound according to claim 1 , wherein the phenyl of R 3 is substituted with one R S selected from —NH 2 , —NHCH 3 , —NHC 2 H 5 , —NHC 3 H 7 , —NH-cyclo-C 3 H 5 , —NHCH(CH 3 ) 2 , —NHC(CH 3 ) 3 , —N(CH 3 ) 2 , —N(C 2 H 5 ) 2 , —N(C 3 H 7 ) 2 , —N(cyclo-C 3 H 5 ) 2 , —N[CH(CH 3 ) 2 ] 2 , or —N[C(CH 3 ) 3 ] 2 .

5. The compound according to claim 1 , wherein the phenyl of R 5 is substituted with one R A selected from —F, —Cl, —Br, I, —OR A2 , or N(R A2 ) 2 , wherein each R A2 is independently selected from hydrogen or linear or branched C 1 -C 6 alkyl.

6. The compound according to claim 1 , wherein the phenyl of R 5 is not substituted with R A .

7. The compound according to claim 1 , wherein R 6 is hydrogen, or linear or branched C 1 -C 6 alkyl.

8. The compound according to claim 1 , wherein R 6 is selected from —H, —CH 3 , —C 2 H 5 , —C 3 H 7 , —CH(CH 3 ) 2 , —C(CH 3 ) 3 or —CH 2 C(CH 3 ) 3 .

9. The compound according to claim 1 , wherein R 6 is selected from H, CH 3 , or C(CH 3 ) 3 .

10. The compound according to claim 1 , wherein R 6 is aryl, optionally substituted with Sub.

11. The compound according to claim 1 , wherein R 6 is phenyl, optionally substituted with Sub.

12. The compound according to claim 1 , wherein R 6 is a C 3 -C 8 cycloalkyl, optionally substituted with Sub.

13. The compound according to claim 1 , wherein R 6 is cyclopentyl or cyclohexyl, optionally substituted with between one and three linear or branched C 1 -C 6 alkyl, —OH, —NH 2 or —NHCOOR 3 5 , wherein R 3 5 represents —H or linear or branched C 1 -C 6 alkyl.

14. The compound according to claim 1 , wherein R 6 is cyclopentyl or cyclohexyl, substituted with one —NH 2 .

15. The compound according to claim 1 , wherein R 6 is selected from thiazolyl, oxazolyl, isothioazolyl, isoxazolyl, piperidinyl, piperazinyl or morpholinyl.

16. The compound according to claim 1 , wherein L is —NR 14 —SO 2 —, R 14 is selected from H, linear or branched C 1 -C 4 alkyl, —SO 2 —R 15 —, wherein R 15 is selected from linear or branched C 1 -C 4 alkyl or C 1 -C 4 alkylene, or R 14 represents —(CH 2 ) r —COOR 16 —, wherein r is an integer from 0 to 4 and R 16 is selected from —H or linear or branched C 1 -C 4 alkyl.

17. The compound according to claim 1 , wherein L is —NR 17 —CO—, R 17 is selected from —H, linear or branched C 1 -C 4 alkyl, or a —(CH 2 ) s — group, wherein s is an integer from 1 to 3, and wherein if R 6 represents a —(CH 2 ) q group, wherein q is an integer from 1 to 3, and R 17 represents a methylene chain —(CH 2 ) s — group, R 6 and R 17 may form together a 5 to 8 membered ring system.

18. The compound according to claim 1 , wherein L is —SO 2 —NR 18 —, R 18 is selected from —H or linear or branched C 1 -C 4 alkyl.

19. The compound according to claim 1 , wherein L is —CO—NR 19 —, wherein R 19 is selected from —H, linear or branched C 1 -C 4 alkyl, or a —(CH 2 ) t -A- group, wherein t is an integer from 1 to 3 and A is selected from N or O, and wherein if R 6 represents a —(CH 2 ) q — group wherein q is an integer from 1 to 3, and R 19 represents a —(CH 2 ) t -A- group, wherein t is selected to be 2 and A represents O,

R 6 and R 19 may form together a 6-membered ring system

20. The compound according to claim 1 , wherein L is —NR 14 —SO 2 —, wherein R 14 is selected from —H, —(CH 2 ) 2 CH 3 , —SO 2 R 15 , wherein R 15 represents —(CH 2 ) 2 CH 3 , or —(CH 2 ), COOR 16 , wherein r is selected to be an integer from 0 to 2, and R 16 represents —CH 3 .

21. The compound according to claim 20 , wherein r is 1.

22. The compound according to claim 1 , wherein L is selected from the group: —NHSO 2 —, —NHCO—, —CONH—, —SO 2 NH—, —NHCONH— or —SO 2 —.

23. A pharmaceutical composition comprising at least one compound according to claim 1 as an active ingredient, together with at least one pharmaceutically acceptable carrier, excipient and/or diluent.

24. The compound of claim 1 wherein HA is selected from the group: pyrrolyl, furanyl, thiophenyl, thienyl, imidazolyl, pyrazolyl, thiazolyl, oxazolyl, isothiazolyl, isoxazolyl, pyridinyl, pyridyl, pyrimidinyl, pyrimidyl, pyrazinyl, pyrazyl, pyradizinyl, pyradizyl, 3-methylpyridyl, benzothienyl, 4-ethylbenzothienyl, 3,4-diethylfuranyl, pyrrolyl, tetrahydroquinolyl, quinolyl, tetrahydroisoquinolinyl, isoquinolinyl, benzoimidazolyl, benzothiazolyl, benzooxyzolyl, benzo[1,3]dioxolyl, indolyl, benzofuranyl, benzothiophenyl, indazolyl and chrom-2-onyl.

25. The compound of claim 24 wherein HC is independently selected from the group: aziridinyl, azetidinyl, pyrrolidinyl, tetrahydrofuranyl, tetrahydrothiophenyl, piperidinyl, piperadizinyl, piperazinyl, tetrahydropyranyl, tetrahydrothiopyranyl and morpholinyl.

Assignments (6)
CHANGE OF ADDRESS Recorded Jun 12, 2023
From: BAYER INTELLECTUAL PROPERTY GMBH
To: BAYER INTELLECTUAL PROPERTY GMBH
Reel/Frame 064021/0344 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 3, 2011
From: LEAD DISCOVERY CENTER GMBH
To: LEAD DISCOVERY CENTER GMBH; BAYER PHARMA AG
Reel/Frame 027171/0704 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 9, 2011
From: KLEBL, BERT; HABENBERGER, PETER; CHOIDAS, AXEL
To: LEAD DISCOVERY CENTER GMBH
Reel/Frame 026419/0896 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2010
From: GPC BIOTECH AG
To: AGENNIX AG
Reel/Frame 024790/0185 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 4, 2010
From: AGENNIX AG
To: KLEBL, BERT; HABENBERGER, PETER; CHOIDAS, AXEL
Reel/Frame 024790/0223 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 12, 2006
From: CHOIDAS, AXEL; BACKES, ALEXANDER; COTTEN, MATT; ENGKVIST, OLA; FELBER, BEATRICE; FREISLEBEN, ACHIM; GODL, KLAUS; GREFF, ZOLTAN; HABENBERGER, PETER; HAFENBRADL, DORIS; HARTUNG, CHRISTIAN; HERGET, THOMAS; HOPPE, EDMUND; KLEBL, BERT; MISSIO, ANDREA; MULLER, GERHARD; SCHWAB, WILFRIED; ZECH, BIRGIT; BRAVO, JOSE; HARRIS, JOHN; LE, JOELLE; MACRITCHIE, JACKIE; SAVIC, VLADIMIR; SHERBORNE, BRAD; SIMPSON, DON
To: GPC BIOTECH AG
Reel/Frame 018620/0521 →