Cyclic amine substituted pyrimidinediamines as PKC inhibitors
View Patent ↗The invention encompasses compounds having formula I or II and the compositions and methods using these compounds in the treatment of conditions in which inhibition of PKC and PKD is therapeutically useful.
1. A compound of formula I:
N-oxide, or therapeutically acceptable salt thereof;
wherein:
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3;
A is selected from bicyclic aryl, bicyclic heteroaryl, tricyclic aryl, tricyclic heteroaryl and
each R 5 independently is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl;
n is an integer between 0 and 3;
p is an integer between 0 and 5;
Q is N, N→O, or CR 7b ; and
R 7b is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl;
provided that:
(1) when X is fluoro, n is zero or one, and A-(R 5 ) p is of the formula:
where each of R 6a , R 6b , R 7a , R 7b and R 8 is independently R 5 ;
then
R 6a or R 6b is not hydrogen; or
R 7a or R 7b is selected from, cycloalkyl, substituted cycloalkyl, acyl, cyano, aminocarbonyl, sulfonyl, sulfonylamino, aminosulfonyl, aryl, substituted aryl, heteroaryl other than oxadiazolyl or oxazolyl, substituted heteroaryl, aminocarbonylamino, alkoxycarbonylamino, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl; or
R 8 is selected from substituted alkyl but not CF 3 or an amino-substituted alkyl, substituted alkenyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, acyl, carboxyl, carboxyl ester, cyano, sulfonyl, sulfonylamino, aryl, substituted aryl, heteroaryl, substituted heteroaryl, alkoxycarbonylamino, aminocarbonyl, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl; and
(2) when A is tricyclic heteroaryl and X is halo, then at least one of R 2a , R 2b , R 4a and R 4b is not hydrogen; and
(3) when X is nitro, CF 3 , or C(O)NH 2 , then at least one of R 2a , R 2b , R 4a and R 4b is not hydrogen; and
(4) the compound is not 5-fluoro-N2-(4-methyl-6-(4-methylpiperazin-1-yl)pyridin-3-yl)-N4-(1,2,2,6,6-pentamethylpiperidin-4-yl)pyrimidine-2,4-diamine.
2. The compound of claim 1 , wherein n is 1 and each of R 2a , R 2b , R 3 , R 4a , and R 4b is methyl.
3. The compound of claim 1 , wherein A is pyridyl.
4. The compound of claim 1 , wherein A is phenyl.
5. A compound according to claim 4 , wherein R 7a or R 7b is selected from cycloalkyl, substituted cycloalkyl, acyl, cyano, aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl.
6. A compound according to claim 4 , wherein R 8 is selected from substituted alkyl, substituted alkenyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, acyl, carboxyl, carboxyl ester, cyano, sulfonyl, and sulfonylamino, wherein R 8 is not CF 3 or an amino-substituted alkyl.
7. The compound of claim 1 , wherein A is a bicyclic aryl or bicyclic heteroaryl selected from:
wherein:
each Y 1 independently is selected from —CH 2 —, —O—, —NR 11 —, —S—, and —S(O) 2 —;
each Y 2 independently is selected from —CH═ and —N═;
each R 10 independently is selected from hydrogen, alkyl, substituted alkyl, alkoxy, alkylthio, halo, cyano, and nitro, or two R 10 attached to the same carbon together form a C 4-6 cycloalkyl or an oxo group; and
each R 11 independently is selected from hydrogen, alkyl and substituted alkyl.
8. The compound of claim 1 , wherein R 2a , R 2b , R 4a and R 4b each is hydrogen or methyl.
9. A compound according to claim 1 , wherein X is methyl, substituted methyl or halo.
10. The compound of claim 8 , wherein X is fluoro.
11. The compound of claim 1 , wherein R 1 is hydrogen.
12. The compound of claim 1 , wherein one R 5 is piperazinyl or C-substituted piperazinyl.
13. A compound according to claim 1 , wherein X is selected from alkyl, substituted alkyl, aminocarbonyl, carboxyl ester, cyano, halo and nitro.
14. A compound having the following formula:
wherein:
W is a bond, —SO 2 —, —C(O)—, or —CH 2 —;
R 9 is sulfonyl;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl.
15. A compound having the following formula:
wherein:
W is a bond, —SO 2 —, —C(O)—, or —CH 2 —;
R 9 is sulfonyl;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl.
16. A compound according to claim 1 , selected from compounds of formula II:
N-oxide, or therapeutically acceptable salt thereof
wherein:
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
Q is N, N→O, or CR 7b ;
n is an integer between 0 and 3;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
R 2a , R 2b , R 4a and R 4b each independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3;
each of R 6a , R 6b , R 7a , R 7b , and R 8 independently is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl;
provided that:
(1) when X is fluoro, and n is zero or one, then:
R 6a or R 6b is not hydrogen; or
R 7a or R 7b is selected from cycloalkyl, substituted cycloalkyl, acyl, cyano, aminocarbonyl, sulfonyl, sulfonylamino, aminosulfonyl, aryl, substituted aryl, heteroaryl other than oxadiazolyl or oxazolyl, substituted heteroaryl, aminocarbonylamino, alkoxycarbonylamino, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl; or
R 8 is selected from substituted alkyl but not CF 3 or an amino-substituted alkyl, substituted alkenyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, acyl, carboxyl, carboxyl ester, cyano, sulfonyl, sulfonylamino, aryl, substituted aryl, heteroaryl, substituted heteroaryl, alkoxycarbonylamino, aminocarbonyl, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl;
(2) when X is nitro, CF 3 , or C(O)NH 2 , then at least one of R 2a , R 2b , R 4a and R 4b not hydrogen; and
(3) the compound is not 5-fluoro-N2-(4-methyl-6-(4-methylpiperazin-1-yl)pyridin-3-yl)-N4-(1,2,2,6,6-pentamethylpiperidin-4-yl)pyrimidine-2,4-diamine.
17. A method of inhibiting an activity of a Protein Kinase C theta, comprising contacting the Protein Kinase C theta with an amount of a compound effective to inhibit the activity of the Protein Kinase C theta wherein the compound is a compound of claim 16 .
18. A compound according to claim 1 , selected from the following compounds, N-oxides, and therapeutically acceptable salts thereof: I-342, I-356, I-357, I-358, I-365, I-370, I-372, I-374, I-387, I-388, I-389, I-391, I-392, I-393, I-394, I-395, I-397, I-398, I-399, I-400, I-402, I-403, I-404, I-405, I-407, I-409, I-414, I-415, I-416, I-420, I-424, I-454, I-455, I-456, I-457, I-458, I-459, I-460, I-461, I-462, I-463, I-464, I-465, I-466, I-467, I-468, I-469, I-470, III-10, and IV-1.
19. A method of inhibiting an activity of a Protein Kinase C theta, comprising contacting the Protein Kinase C theta with an amount of a compound effective to inhibit the activity of the Protein Kinase C theta wherein the compound is a compound of claim 18 .
20. A method inhibiting an activity of a Protein Kinase C theta, comprising contacting the Protein Kinase C theta with an amount of a compound effective to inhibit the activity of the Protein Kinase C theta wherein the compound is a compound of claim 1 .
21. The method of claim 20 , wherein the method further comprises contacting the Protein Kinase C theta with the compound in a cell.
22. The method of claim 21 , wherein said contacting occurs in vivo.
23. The method of claim 21 , wherein said contacting occurs in vitro.
24. A compound according to claim 1 , wherein X is cyano.
25. A compound having the following formula:
wherein:
W is —SO 2 —, —C(O)—, or —CH 2 —;
R 9 is selected from alkyl, substituted alkyl, sulfonyl, acyl, carboxyl and carboxyl ester;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 independently is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl.
26. A compound having the following formula:
wherein:
W is a bond, —SO 2 —, —C(O)—, or —CH 2 —;
R 9 is selected from alkyl, substituted alkyl, sulfonyl, acyl, carboxyl and carboxyl ester;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 is selected from cycloalkyl, substituted cycloalkyl, acyl, cyano, aminocarbonyl, sulfonyl, sulfonylamino, aminosulfonyl, aryl, substituted aryl, heteroaryl other than oxadiazolyl or oxazolyl, substituted heteroaryl, aminocarbonylamino, alkoxycarbonylamino, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl.
27. A compound having the following formula:
wherein:
W is —SO 2 —, —C(O)—, or —CH 2 —;
R 9 is selected from alkyl, substituted alkyl, sulfonyl, acyl, carboxyl and carboxyl ester;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 independently is selected from hydrogen, alkyl, substituted alkyl, alkoxy, substituted alkoxy, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, heterocyclyl, substituted heterocyclyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, acylamino, alkoxycarbonylamino, aminocarbonylamino, acyl, halo, hydroxyl, carboxyl, carboxyl ester, cyano, aminocarbonyl, substituted aminocarbonyl, sulfonyl, sulfonylamino, and aminosulfonyl.
28. A compound having the following formula:
wherein:
W is a bond, —SO 2 —, —C(O)—, or —CH—;
R 9 is selected from alkyl, substituted alkyl, sulfonyl, acyl, carboxyl and carboxyl ester;
X is selected from alkyl, substituted alkyl, hydroxy, alkoxy, substituted alkoxy, amino, substituted amino, aminocarbonyl, carboxyl, carboxyl ester, cyano, fluoro, chloro, nitro, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, and trihalomethyl;
R 1 is selected from hydrogen, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, and substituted heteroaryl;
each R 2a , R 2b , R 4a and R 4b independently is selected from hydrogen and C 1-3 alkyl;
R 3 is selected from —Y, —C(O)—Y, —SO 2 —Y, —(CH 2 ) m —C(O)—Y, —CH═CH—C(O)—Y and —(CH 2 ) m —NY 2 , wherein each Y independently is hydrogen, hydroxy, oxy radical, alkoxy, alkyl, or substituted alkyl and m is 1, 2, or 3; and
R 5 is selected from cycloalkyl, substituted cycloalkyl, acyl, cyano, aminocarbonyl, sulfonyl, sulfonylamino, aminosulfonyl, aryl, substituted aryl, heteroaryl other than oxadiazolyl or oxazolyl, substituted heteroaryl, aminocarbonylamino, alkoxycarbonylamino, piperidinyl, substituted piperidinyl, substituted morpholinyl, pyrrolidinyl, substituted pyrrolidinyl, C-substituted piperazinyl, diazabicyclo[3.3.1]nonanyl, and thiomorpholinyl.
29. A compound selected from the following compounds, N-oxides, and therapeutically acceptable salts thereof: I-213, I-226, I-227, I-228, I-229, I-234, I-235, I-236, I-237, I-238, I-239, I-277, I-279, I-280, I-281, I-282, I-283, I-284, I-285, I-286, I-287, I-289, I-291, I-292, I-293, I-294, I-295, I-297, I-298, I-299, I-300, I-301, I-302, I-303, I-304, I-305, I-308, I-309, I-311, I-312, I-314, I-316, I-317, I-319, I-321, I-322, I-323, I-325, I-338, I-339, I-353, I-355, I-359, I-368, I-446, and I-447.