IP Library Granted Patent US 8,410,178
Granted Patent B2
US 8,410,178 · App. 13/284,852 · Granted Apr 2, 2013

CIS 3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-derivatives, substantially enantiomerically pure compositions and methods

Inventors: Brian J. Carroll (Gig Harbor, WA); Gary Darland (Gig Harbor, WA); Anuradha Desai (Gig Harbor, WA); Veera Konda (Gig Harbor, WA); Clinton J. Dahlberg (Port Orchard, WA); Jan Urban (Gig Harbor, WA)
Assignee: KinDex Therapeutics, LLC
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Quick Facts
Patent No.
US 8,410,178
App. No.
13/284,852
Granted
Apr 2, 2013
Kind
B2
Abstract

The present application provides cis 3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one derivatives and substantially enantiomerically pure compositions thereof. These derivatives include (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one, (−)-(4R,5S)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one, and salts and crystals thereof. The application further provides methods of using the disclosed compounds and compositions to activate PPARγ, activate GPR120, inhibit inflammation, and treat conditions responsive to PPARγ modulation, conditions responsive to GPR120 modulation, and metabolic disturbances such as diabetes.

Claims (577)

1. A potassium salt of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

2. A crystal of the potassium salt of claim 1 , wherein the crystal has a monoclinic space group P 21 21 2, and unit cell dimensions of a=23.3110(9) Å, α=90°, b=28.9052(12) Å, β=90°, c=13.6845(5) Å, and γ=90°.

3. The crystal of claim 2 , wherein the crystal has the three-dimensional atomic coordinates set forth in the following table:

x

y

z

U(eq)

C(1)

 7524(2)

5106(1)

 9242(3)

 28(1)

C(2)

 8024(2)

4959(1)

 9927(3)

 35(1)

C(3)

 7914(2)

4506(1)

10298(3)

 33(1)

C(4)

 7453(2)

4302(1)

 9756(3)

 34(1)

C(5)

 7216(2)

4643(1)

 8998(3)

 33(1)

C(6)

 7115(2)

5428(1)

 9834(3)

 36(1)

C(7)

 6892(4)

5255(2)

10809(5)

 72(2)

C(8)

 6566(3)

5590(2)

11380(4)

 50(1)

C(9)

 6337(3)

5389(3)

12359(5)

 68(2)

C(10)

 5872(6)

5053(5)

12195(8)

148(6)

C(11)

 6796(4)

5225(3)

13006(6)

 91(3)

C(12)

 8204(2)

4288(1)

11112(3)

 41(1)

C(13)

 8714(3)

4528(2)

11556(5)

 56(2)

C(14)

 8911(3)

4318(2)

12552(5)

 60(2)

C(15)

 8487(5)

4435(3)

13312(5)

 93(3)

C(16)

 9491(5)

4512(4)

 12823(11)

159(6)

C(17)

 7316(2)

4476(2)

 7954(3)

 39(1)

C(18)

 6870(2)

4671(2)

 7236(4)

 44(1)

C(19)

 6917(3)

4494(2)

 6194(4)

 54(1)

C(20)

 6405(3)

4629(3)

 5597(5)

 74(2)

C(21)

 7461(4)

4659(3)

 5703(5)

 82(2)

O(1)

 7752(1)

5356(1)

 8454(2)

 34(1)

O(2)

 8426(2)

5226(1)

10086(3)

 42(1)

O(3)

 7256(2)

3907(1)

 9822(3)

 43(1)

O(4)

 7004(1)

5799(1)

 9500(2)

 38(1)

O(5)

 8047(2)

3916(1)

11452(3)

 60(1)

C(22)

 7596(2)

6286(1)

 5706(3)

 32(1)

C(23)

 7561(2)

6826(2)

 5706(4)

 39(1)

C(24)

 7773(2)

6981(2)

 6619(3)

 35(1)

C(25)

 8071(2)

6608(2)

 7085(3)

 30(1)

C(26)

 8089(2)

6191(2)

 6411(3)

 33(1)

C(27)

 7030(2)

6134(1)

 6157(3)

 35(1)

C(28)

 6532(2)

6085(2)

 5470(4)

 44(1)

C(29)

 5957(2)

6096(2)

 5957(4)

 50(1)

C(30)

 5435(2)

6099(2)

 5260(4)

 54(1)

C(31)

 4893(3)

6202(3)

 5806(6)

 75(2)

C(32)

 5377(3)

5650(3)

 4727(5)

 69(2)

C(33)

 8688(2)

6152(2)

 5906(4)

 43(1)

C(34)

 8850(3)

5656(2)

 5614(4)

 53(1)

C(35)

 8940(3)

5313(2)

 6443(5)

 60(2)

C(36)

 9068(4)

4832(2)

 5990(6)

 77(2)

C(37)

 9412(4)

5462(3)

 7133(5)

 84(2)

C(38)

 7655(2)

7431(2)

 7050(3)

 39(1)

C(39)

 7350(4)

7795(2)

 6449(5)

 70(2)

C(40)

 7632(4)

8042(3)

 5651(7)

 87(2)

C(41)

 7251(5)

8330(3)

 5056(7)

108(3)

C(42)

 8045(6)

8295(5)

  6214(12)

172(6)

O(6)

 7666(2)

6098(1)

 4775(2)

 41(1)

O(7)

 7349(2)

7029(1)

 5011(3)

 52(1)

O(8)

 8285(1)

6599(1)

 7913(2)

 34(1)

O(9)

 6986(1)

6066(1)

 7050(2)

 38(1)

O(10)

 7759(2)

7512(1)

 7914(3)

 45(1)

C(43)

 9206(2)

2357(2)

11169(3)

 32(1)

C(44)

 9254(2)

2831(2)

10658(4)

 36(1)

C(45)

 9825(2)

2899(2)

10303(3)

 34(1)

C(46)

10172(2)

2515(1)

10586(3)

 32(1)

C(47)

 9823(2)

2157(1)

11149(3)

 32(1)

C(48)

 8995(2)

2406(2)

12207(3)

 37(1)

C(49)

 9293(3)

2753(2)

12844(4)

 50(1)

C(50)

 9393(4)

2593(2)

13886(5)

 74(2)

C(51)

 9820(5)

2928(3)

14482(7)

106(3)

C(52)

 9616(8)

3368(3)

14555(6)

167(7)

C(53)

 9965(6)

2714(4)

15395(7)

115(3)

C(54)

10026(2)

3288(2)

 9736(3)

 33(1)

C(55)

 9587(2)

3651(2)

 9436(4)

 45(1)

C(56)

 9221(3)

3489(2)

 8539(5)

 59(2)

C(57)

 8725(3)

3809(3)

 8372(6)

 82(2)

C(58)

 9567(4)

3424(4)

 7645(6)

108(3)

C(59)

 9882(2)

1677(2)

10713(3)

 36(1)

C(60)

 9653(2)

1295(2)

11353(4)

 42(1)

C(61)

 9602(3)

 834(2)

10846(5)

 67(2)

C(62)

 9336(4)

 470(2)

11526(6)

 81(2)

C(63)

10172(5)

 682(2)

10454(8)

125(5)

O(11)

 8798(1)

2080(1)

10663(2)

 37(1)

O(12)

 8825(1)

3073(1)

10574(3)

 53(1)

O(13)

10687(1)

2447(1)

10439(3)

 44(1)

O(14)

 8606(2)

2161(1)

12507(2)

 45(1)

O(15)

10531(1)

3326(1)

 9471(2)

 35(1)

C(64)

 6773(2)

7178(2)

12470(4)

 47(1)

C(65)

 7186(2)

6744(2)

12389(3)

 40(1)

C(66)

 7458(2)

6767(1)

11475(3)

 31(1)

C(67)

 7333(2)

7202(2)

11015(3)

 34(1)

C(68)

 7027(2)

7519(2)

11725(4)

 44(1)

C(69)

 6192(3)

6998(2)

12142(4)

 54(1)

C(70)

 5847(3)

6754(3)

12876(6)

 72(2)

C(71)

 5325(4)

6482(3)

12490(7)

 95(3)

C(72)

 4752(4)

6633(4)

12595(7)

100(3)

C(73)

 4721(6)

7091(4)

12195(9)

135(4)

C(74)

 4301(5)

6345(7)

 12259(12)

174(7)

C(75)

 7464(3)

7874(2)

12165(4)

 49(1)

C(76)

 8000(3)

7660(2)

12596(4)

 50(1)

C(77)

 8409(3)

7997(2)

13104(5)

 54(1)

C(78)

 8696(3)

8341(2)

12393(5)

 66(2)

C(79)

 8864(3)

7718(3)

13668(7)

 89(3)

C(80)

 7868(2)

6439(1)

11068(3)

 27(1)

C(81)

 8128(2)

6080(1)

11742(3)

 34(1)

C(82)

 8581(2)

6290(2)

12429(3)

 36(1)

C(83)

 9073(2)

6516(2)

11867(4)

 50(1)

C(84)

 8812(2)

5905(2)

13095(4)

 49(1)

O(16)

 6741(2)

7354(1)

13432(3)

 56(1)

O(17)

 7214(2)

6461(1)

13049(2)

 46(1)

O(18)

 7471(1)

7341(1)

10200(2)

 35(1)

O(19)

 6045(2)

7027(1)

11291(3)

 55(1)

O(20)

 8024(1)

6460(1)

10215(2)

 31(1)

O(21)

 6520(2)

3179(1)

10191(3)

 50(1)

O(22)

 9560(4)

5349(3)

 10090(10)

 96(4)

K(1)

 8740(1)

5960(1)

 9107(1)

 32(1)

K(2)

 7682(1)

3139(1)

10764(1)

 32(1)

K(3)

 7153(1)

6676(1)

 8756(1)

 28(1)

K(4)

 6484(1)

2234(1)

10709(1)

  33(1).

4. A pharmaceutical composition comprising the potassium salt of claim 1 and a pharmaceutically acceptable carrier.

5. A method of treating a condition responsive to PPARγ modulation in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a pharmaceutical composition comprising (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof and a pharmaceutically acceptable carrier.

6. A method of treating a condition responsive to GPR120 modulation in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a pharmaceutical composition comprising (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof and a pharmaceutically acceptable carrier.

7. A method of treating a metabolic disturbance in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a pharmaceutical composition comprising (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof and a pharmaceutically acceptable carrier.

8. Crystalline (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt (1:1).

9. Crystalline (−)-(4R,5S)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt (1:1).

10. A method of treating a condition responsive to PPARγ modulation in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a substantially enantiomerically pure composition of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof.

11. A method of treating a condition responsive to GPR120 modulation in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a substantially enantiomerically pure composition of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof.

12. A method of treating a metabolic disturbance in a subject in need thereof comprising administering to the subject a therapeutically effective amount of a substantially enantiomerically pure composition of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof.

13. The method of claim 5 , 6 , 7 , 10 , 11 , or 12 , wherein the salt thereof is a potassium salt having the structure:

14. The method of claim 10 , 11 , or 12 , wherein the composition further comprises a pharmaceutically acceptable carrier.

15. The method of claim 5 or 10 , wherein the condition is selected from the group consisting of diabetes and obesity.

16. The method of claim 7 or 12 , wherein the metabolic disturbance is diabetes.

17. The method of claim 7 or 12 , wherein administration of the pharmaceutical composition results in a decrease in glucose and/or lipid levels.

Assignments (2)
CHANGE OF NAME Recorded Jul 30, 2014
From: KINDEX THERAPEUTICS, LLC
To: KINDEX PHARMACEUTICALS, INC.
Reel/Frame 033447/0029 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 17, 2012
From: CARROLL, BRIAN J.; DARLAND, GARY; DESAI, ANURADHA; KONDA, VEERA; DAHLBERG, CLINTON; URBAN, JAN
To: KINDEX THERAPEUTICS, LLC
Reel/Frame 027542/0143 →
Continuity (4)
Provisional Application 61408572 · Oct 30, 2010
Provisional Application 61448150 · Mar 1, 2011
Provisional Application 61508434 · Jul 15, 2011
Related Publication 20120108671A1 · May 3, 2012