IP Library Granted Patent US 8,470,979
Granted Patent B2
US 8,470,979 · App. 12/329,820 · Granted Jun 25, 2013

Humanized antibody molecules specific for IL-31

Inventors: Kent Bondensgaard (Værløse, DK); Roland Beckmann (Vienna, AT)
Assignees: ZymoGenetics, Inc.; Merck Serono S/A
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Quick Facts
Patent No.
US 8,470,979
App. No.
12/329,820
Granted
Jun 25, 2013
Kind
B2
Abstract

The invention provides humanized mouse anti-human IL-31 antibodies and antibody fragments that are capable of binding IL-31 and thereby neutralizing, inhibiting, limiting, or reducing the proinflammatory or pro-pruritic effects of IL-31.

Claims (121)

1. An isolated antibody or antibody fragment that binds to human IL-31, comprising

a) a humanized heavy chain variable domain comprising CDR1, CDR2, and CDR3 consisting of amino acid sequences SEQ ID NO: 1, 2 and 3, respectively or consisting of amino acid sequences SEQ ID NO: 1, 4 and 3, respectively; and

b) a humanized light chain variable domain comprising CDR1, CDR2, and CDR3 consisting of amino acid sequences of SEQ ID NO: 5, 6 and 7, respectively.

2. The antibody or antibody fragment according to claim 1 , wherein

a) said humanized heavy chain variable domain comprises framework regions FR1, FR2, FR3 and FR4 and wherein said humanized heavy chain variable domain is selected from the group consisting of:

1) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:8, the FR2 sequence has at least 90% identity to SEQ ID NO:9, the FR3 sequence has at least 90% identity to SEQ ID NO:10 and the FR4 sequence has at least 90% identity to SEQ ID NO:11 ;

2) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:12, the FR2 sequence has at least 90% identity to SEQ ID NO:13, the FR3 sequence has at least 90% identity to SEQ ID NO:14 and the FR4 sequence has at least 90% identity to SEQ ID NO:15 ;

3) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO: 12, the FR2 sequence has at least 90% identity to SEQ ID NO:13, the FR3 sequence has at least 90% identity to SEQ ID NO:16 and the FR4 sequence has at least 90% identity to SEQ ID NO:15 ;

wherein the amino acid at position 29 in SEQ ID NO: 8 or SEQ ID NO: 12 is leucine and the amino acid at position 32 SEQ ID NO: 14 or SEQ ID NO: 16 is phenylalanine; and

b) said humanized light chain variable domain comprises framework regions FR5, FR6, FR7, and FR8, wherein said humanized heavy chain variable region is selected from the group consisting of:

1) a light chain variable domain wherein the FR5 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO: 17, the FR6 sequence has at least 90% identity to SEQ ID NO:18, the FR7 sequence has at least 90% identity to SEQ ID NO:19 and the FR8 sequence has at least 90% identity to SEQ ID NO:20; and

2) a light chain variable domain wherein the FR5 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO: 17, the FR6 sequence has at least 90% identity to SEQ ID NO:18, the FR7 sequence has at least 90% identity to SEQ ID NO:21 and the FR8 sequence has at least 90% identity to SEQ ID NO:20, and

wherein the amino acid at position 15 in SEQ ID NO:19 or SEQ ID NO: 21 is tyrosine.

3. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 8, the FR2 sequence consists of the amino acid sequence of SEQ ID NO: 9, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:10 and the FR4 sequence consists of the amino acid sequence of SEQ ID NO:11 and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:19 and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

4. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 12, the FR2 sequence consists of the amino acid sequence of SEQ ID NO:13, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:14 and the FR4 sequence consists of the amino acid sequence of SEQ ID NO: 15 and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:19 and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

5. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 12, the FR2 sequence consists of the amino acid sequence of SEQ ID NO:13, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:14 and the FR4 sequence consists of the amino acid sequence of SEQ ID NO:15 and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:21 and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

6. The antibody or antibody fragment according to claim 2 , wherein the amino acid at position 8 in SEQ ID NO: 14 or SEQ ID NO: 16 is lysine.

7. The antibody or antibody fragment according to claim 1 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

8. The antibody fragment according to claim 1 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

9. The antibody or antibody fragment according to claim 1 , wherein said antibody or antibody fragment comprises PEG.

10. A pharmaceutical composition comprising the antibody or antibody fragment of claim 1 .

11. An isolated antibody comprising a light chain comprising the amino acid sequence of SEQ ID NO: 46 and a heavy chain comprising the amino acid sequence of SEQ ID NO: 47.

12. An isolated antibody or antibody fragment that binds to human IL-31, comprising:

a) a humanized heavy chain variable domain comprising a CDR1 consisting of the amino acid sequence of SEQ ID NO: 1, a CDR3 consisting of the amino acid sequence of SEQ ID NO: 3, and a CDR2 consisting of the amino acid sequence of AIYPGDGDTRYSXaa1Xaa2FXaa3G (SEQ ID NO: 22) wherein Xaa1 is glutamine or proline, Xaa2 is serine or lysine and Xaa3 is glutamine or lysine and wherein said humanized heavy chain variable domain is selected from the group consisting of:

1) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO: 8, the FR2 sequence has at least 90% identity to SEQ ID NO:9, the FR3 sequence has at least 90% identity to SEQ ID NO:10 and the FR4 sequence has at least 90% identity to SEQ ID NO:11 ;

2) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO: 12, the FR2 sequence has at least 90% identity to SEQ ID NO:13, the FR3 sequence has at least 90% identity to SEQ ID NO: 14 and the FR4 sequence has at least 90% identity to SEQ ID NO:15; and

3) a heavy chain variable domain wherein the FR1 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:12, the FR2 sequence has at least 90% identity to SEQ ID NO:13, the FR3 sequence has at least 90% identity to SEQ ID NO:16 and the FR4 sequence has at least 90% identity to SEQ ID NO:15 ;

and wherein the amino acid at position 29 in SEQ ID NO:8 or SEQ ID NO: 12 is leucine and amino acid at position 32 in SEQ ID NO: 14 or SEQ ID NO: 16 is phenylalanine; and

b) a humanized light chain variable domain comprising a CDR1 consisting of the amino acid sequence of SEQ ID NO: 5, a CDR2 consisting of the amino acid sequence of SEQ ID NO: 6, and a CDR3 consisting of the amino acid sequence of SEQ ID NO: 7, and wherein said humanized heavy chain variable domain is selected from the group consisting of:

1) a light chain variable domain wherein the FR5 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:17, the FR6 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:18, the FR7 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:19, and the FR8 sequence has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:20; and

2) a light chain variable domain wherein the FR5 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:17, the FR6 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:18, the FR7 sequence has at least 90% identity to the amino acid sequence of SEQ ID NO:21, and the FR8 sequence has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:20;

wherein the amino acid at position 15 in SEQ ID NO:19 or SEQ ID NO: 21 is tyrosine.

13. The antibody or antibody fragment according to claim 12 , wherein Xaa1, Xaa2, and Xaa3 of SEQ ID NO: 22 are selected from the group consisting of:

a) Xaa1 glutamine, Xaa2 is lysine, and Xaa3 is lysine;

b) Xaa1 is proline, Xaa2 is serine, and Xaa3 is glutamine; and

c) Xaa1 is glutamine, Xaa2 is lysine, and Xaa3 is glutamine.

14. The antibody or antibody fragment according to claim 12 , wherein the amino acid at position 8 in SEQ ID NO: 14 or SEQ ID NO: 16 is leucine.

15. The antibody or antibody fragment according to claim 12 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

16. The antibody fragment according to claim 12 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

17. The antibody or antibody fragment according to claim 12 , wherein said antibody or antibody fragment comprises PEG.

18. A pharmaceutical composition comprising the antibody or antibody fragment of claim 12 .

19. An isolated antibody or antibody fragment that binds to human IL-31, comprising a humanized heavy chain variable domain comprising the amino acid sequence of SEQ ID NO:44 and a humanized light chain variable domain comprising the amino acid sequence of SEQ ID NO:26.

20. The antibody or antibody fragment according to claim 19 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

21. The antibody fragment according to claim 19 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

22. The antibody or antibody fragment according to claim 19 , wherein said antibody or antibody fragment comprises PEG.

23. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 12, the FR2 sequence consists of the amino acid sequence of SEQ ID NO: 13, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:16 and the FR4 sequence consists of the amino acid sequence of SEQ ID NO: 15, and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:21 and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

24. The antibody or antibody fragment according to claim 1 , wherein the humanized heavy chain variable domain has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:47 and the humanized light chain variable domain has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:46.

25. The antibody or antibody fragment according to claim 24 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

26. The antibody fragment according to claim 24 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

27. The antibody or antibody fragment according to claim 24 , wherein said antibody or antibody fragment comprises PEG.

28. A pharmaceutical composition comprising the antibody or antibody fragment of claim 24 .

29. The antibody or antibody fragment according to claim 1 , wherein the humanized heavy chain variable domain has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:44 and the humanized light chain variable domain has at least 90% sequence identity to the amino acid sequence of SEQ ID NO:26.

30. The antibody or antibody fragment according to claim 29 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

31. The antibody fragment according to claim 29 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

32. The antibody or antibody fragment according to claim 29 , wherein said antibody or antibody fragment comprises PEG.

33. A pharmaceutical composition comprising the antibody or antibody fragment of claim 29 .

34. An isolated antibody or antibody fragment that binds to human IL-31, comprising

a) a humanized heavy chain variable domain comprising:

i) a FR1 sequence comprising the amino acid sequence of SEQ ID NO:8 or of SEQ ID NO:12;

ii) a variable heavy domain CDR1 sequence comprising the amino acid sequence of SEQ ID NO:1;

iii) a FR2 sequence comprising the amino acid sequence of SEQ ID NO:9 or of SEQ ID NO:13;

iv) a variable heavy domain CDR2 sequence comprising the amino acid sequence of SEQ ID NO: 2 or of SEQ ID NO:4;

v) a FR3 sequence comprising the amino acid sequence of SEQ ID NO: 10, of SEQ ID NO:14, or of SEQ ID NO:16;

vi) a variable heavy domain CDR3 sequence comprising the amino acid sequence of SEQ ID NO:3; and

vii) a FR4 sequence comprising the amino acid sequence of SEQ ID NO:11 or of SEQ ID NO:15; and

b) a humanized light chain variable domain comprising:

i) a FR5 sequence comprising the amino acid sequence of SEQ ID NO:17;

ii) a variable light domain CDR1 sequence comprising the amino acid sequence of SEQ ID NO:5;

iii) a FR6 sequence comprising the amino acid sequence of SEQ ID NO: 18;

iv) a variable light domain CDR2 sequence comprising the amino acid sequence of SEQ ID NO: 6;

v) a FR7 sequence comprising the amino acid sequence of SEQ ID NO: 19 or of SEQ ID NO:21;

vi) a variable light domain CDR3 sequence comprising the amino acid sequence of SEQ ID NO:7; and

vii) a FR8 sequence comprising the amino acid sequence of SEQ ID NO:20.

35. The antibody or antibody fragment according to claim 34 , wherein the antibody comprises a heavy chain immunoglobulin constant domain selected from the group consisting of:

a) a human IgG1 constant domain;

b) a human IgG2 constant domain;

c) a human IgG3 constant domain;

d) a human IgG4 constant domain;

e) a human IgM constant domain;

f) a human IgE constant domain; and

g) a human IgA constant domain.

36. The antibody fragment according to claim 34 , wherein said fragment is selected from the group consisting of: Fab, Fab′, F(ab′)2, Fv fragments, scFv; diabodies; linear antibodies; single-chain antibody molecules; monobodies; and multispecific antibodies formed from antibody fragments.

37. The antibody or antibody fragment according to claim 34 , wherein said antibody or antibody fragment comprises PEG.

38. A pharmaceutical composition comprising the antibody or antibody fragment of claim 34 .

39. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 8, the FR2 sequence consists of the amino acid sequence of SEQ ID NO:9, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:10, and the FR4 sequence consists of the amino acid sequence of SEQ ID NO:11, and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:21, and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

40. The antibody or antibody fragment according to claim 2 , wherein the FR1 sequence consists of the amino acid sequence of SEQ ID NO: 12, the FR2 sequence consists of the amino acid sequence of SEQ ID NO:13, the FR3 sequence consists of the amino acid sequence of SEQ ID NO:16, and the FR4 sequence consists of the amino acid sequence of SEQ ID NO:15, and wherein the FR5 sequence consists of the amino acid sequence of SEQ ID NO: 17, the FR6 sequence consists of the amino acid sequence of SEQ ID NO:18, the FR7 sequence consists of the amino acid sequence of SEQ ID NO:19, and the FR8 sequence consists of the amino acid sequence of SEQ ID NO:20.

Assignments (5)
CORRECTION OF ERROR IN COVER SHEET PREVIOUSLY RECORDED: RECEIVING PARTY IS INCORRECTLY IDENTIFIED. Recorded Mar 22, 2011
From: BECKMANN, ROLAND
To: MERCK SERONO S/A
Reel/Frame 026008/0945 →
CORRECTION OF ERROR IN COVER SHEET PREVIOUSLY RECORDED:RECEIVING PARTY IS INCORRECTLY IDENTIFIED Recorded Mar 22, 2011
From: BONDENSGAARD, KENT
To: NOVO NORDISK A/S
Reel/Frame 026008/0949 →
LICENSE Recorded Mar 16, 2011
From: MERCK SERONO SA
To: ZYMOGENETICS, INC.
Reel/Frame 025993/0723 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 16, 2011
From: NOVO NORDISK A/S
To: ZYMOGENETICS, INC.
Reel/Frame 025993/0729 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 30, 2009
From: BECKMANN, ROLAND; BONDENSGAARD, KENT
To: ZYMOGENETICS, INC.
Reel/Frame 022624/0591 →
Continuity (2)
Provisional Application 61012362 · Dec 7, 2007
Related Publication 20090208494A1 · Aug 20, 2009